mRNA_M-pyrifera_M_contig118601.3842.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig118601.3842.1
Unique NamemRNA_M-pyrifera_M_contig118601.3842.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
[Close]
BLAST of mRNA_M-pyrifera_M_contig118601.3842.1 vs. uniprot
Match: A0A1A7WMY8_9TELE (AlkB, alkylation repair homolog 8 (Fragment) n=1 Tax=Iconisemion striatum TaxID=60296 RepID=A0A1A7WMY8_9TELE)

HSP 1 Score: 132 bits (331), Expect = 2.350e-33
Identity = 85/205 (41.46%), Postives = 108/205 (52.68%), Query Frame = 1 
Query:    1 YLSGQGIRPHVDTRSAFGPVLASLSLGASAVMEFRPQEGESSPLPRSYVWAIDLPPRSVLFLTGDARNTWSHAIPPRLIDCI-------------DGKTR------QRDRRVSLTFRSL----LPTAFDPPPPDDPDAPPASFHSSRLDSPSPTSTPTPTVVGPPAPAVEKEFVHQFYETAAEHFSDTRHTPWPRVAHFVASLRP 546
            Y SGQGI PHVDT SAF   + SLSLGA AVMEFR  +G         V A+ LP RS+L + G++R  W+H I PR  D +             D +T+      +R  R S TFR +       AF           P++  S R  SP PTS P+       A  +EKE+VH+ Y+  A HFS TRH+PWPRV HF++SL P
Sbjct:  213 YESGQGIPPHVDTHSAFEDTILSLSLGAKAVMEFRHPDGR--------VVAVVLPSRSLLVMKGESRYLWTHGITPRKFDLVPACESQSAALTFPDLRTQSGLTLSKRGTRTSFTFRKIRHERCRCAF-----------PSACDSQRTTSPPPTSPPSLPCCRADAARLEKEYVHRVYDAIASHFSSTRHSPWPRVCHFLSSLAP 398
[Close]
BLAST of mRNA_M-pyrifera_M_contig118601.3842.1 vs. uniprot
Match: A0A6G0WVE6_9STRA (Alkylated DNA repair protein alkB homolog 8 n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0WVE6_9STRA)

HSP 1 Score: 134 bits (336), Expect = 2.580e-33
Identity = 79/183 (43.17%), Postives = 103/183 (56.28%), Query Frame = 1 
Query:    1 YLSGQGIRPHVDTRSAFGPVLASLSLGASAVMEFR-PQEGESSPLPRSYVWAIDLPPRSVLFLTGDARNTWSHAIPPRLIDCIDGKTRQRDRRVSLTFRSLLPTAFDPPPPDDPDAPPASFHSSRLDSPSPTSTPTPTVVGPPAPAVEKEFVHQFYETAAEHFSDTRHTPWPRVAHFVASLRP 546
            YL GQGI  H+DT SAF   + +LSLG ++VMEFR P +G           +  + PRS+  +TG +R  W+H + PR+ D ID +   R RRVS+TFR L  T    P PD  D+    F ++  D   PT              +E+ +VH FYET A+HFS TRH+PWPRVA FV SL P
Sbjct:  242 YLPGQGISAHIDTHSAFTASIGTLSLGHASVMEFRHPDDGRCE--------SFLMEPRSLYIMTGASRYQWTHCVQPRMFDVIDNEKVMRQRRVSITFRKLQTTPCTCPYPDQCDS--QMFQTNGDDKMYPT-------------LIEQRYVHDFYETIADHFSSTRHSPWPRVAEFVHSLPP 401
[Close]
BLAST of mRNA_M-pyrifera_M_contig118601.3842.1 vs. uniprot
Match: D0MUQ0_PHYIT (Alkylated DNA repair protein alkB 8 n=1 Tax=Phytophthora infestans (strain T30-4) TaxID=403677 RepID=D0MUQ0_PHYIT)

HSP 1 Score: 134 bits (337), Expect = 2.670e-33
Identity = 83/188 (44.15%), Postives = 105/188 (55.85%), Query Frame = 1 
Query:    1 YLSGQGIRPHVDTRSAFGPVLASLSLGASAVMEFRPQEGESSPLPRSYVWAIDLPPRSVLFLTGDARNTWSHAIPPRLIDCIDGKTRQRDRRVSLTFRSL--------LPTAFDPPPPDDPDAPPASFHSSRLDSPSPTSTPTPTVVGPPAPAVEKEFVHQFYETAAEHFSDTRHTPWPRVAHFVASL 540
            YL GQGI  H+DT SAF   +ASLS+ +  VM+FR  +G  +         + LP RS+  ++G +R  W HAI PR  D IDGK   R RRVS+TFR +         P   D P  D  +          LD  S T++  PT       A+EK++VH+FYET A HFS TRH+PWPRVA FVASL
Sbjct:  235 YLPGQGIAFHLDTHSAFTTTIASLSICSEVVMDFRHPDGVRNE-------GVLLPARSLAVMSGASRYKWEHAIVPRTFDVIDGKQIPRQRRVSITFRKIHSGPCECSFPKYCDTPERDGQE----DAQEEELDPSSQTTSLAPT-------AMEKQYVHEFYETVAAHFSSTRHSPWPRVAQFVASL 404
[Close]
BLAST of mRNA_M-pyrifera_M_contig118601.3842.1 vs. uniprot
Match: A0A8K1C657_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1C657_PYTOL)

HSP 1 Score: 132 bits (332), Expect = 1.250e-32
Identity = 86/187 (45.99%), Postives = 104/187 (55.61%), Query Frame = 1 
Query:    1 YLSGQGIRPHVDTRSAFGPVLASLSLGASAVMEFRPQEGESSPLPRSYVWAIDLPPRSVLFLTGDARNTWSHAIPPRLIDCIDGKTRQRDRRVSLTFRSL--LPTAFDPPPPDDPDAPPASFHSSRLDSPSPTSTPTPTVV--GPPAPA-VEKEFVHQFYETAAEHFSDTRHTPWPRVAHFVASLRP 546
            Y+ GQGI  H+DT SAF   +ASLSLG   VMEFR  +G           ++ L PRS+L +TG +R  W+HAIPPRL D IDG    R RR+S+TFR +  +P   D P   D           RL             V  G  AP  VE+++VHQFYET A HFS TR+ PWPRVA FV SL P
Sbjct:  261 YMPGQGIAAHIDTHSAFTNAIASLSLGNEIVMEFRHPDGRCE--------SVLLQPRSLLIMTGASRYEWTHAIPPRLFDVIDGVRVDRKRRLSITFRKIQSVPCTCDFPVQCDAQE----REQQRLMELQRQKEQEKADVANGSLAPTLVEQQYVHQFYETVATHFSSTRYNPWPRVADFVRSLEP 435
[Close]
BLAST of mRNA_M-pyrifera_M_contig118601.3842.1 vs. uniprot
Match: A0A485LEX8_9STRA (Alkylated DNA repair protein alkB homolog 8 n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A485LEX8_9STRA)

HSP 1 Score: 131 bits (329), Expect = 2.440e-32
Identity = 77/181 (42.54%), Postives = 103/181 (56.91%), Query Frame = 1 
Query:    1 YLSGQGIRPHVDTRSAFGPVLASLSLGASAVMEFR-PQEGESSPLPRSYVWAIDLPPRSVLFLTGDARNTWSHAIPPRLIDCIDGKTRQRDRRVSLTFRSLLPTAFDPPPPDDPDAPPASFHSSRLDSPSPTSTPTPTVVGPPAPAVEKEFVHQFYETAAEHFSDTRHTPWPRVAHFVASL 540
            YL GQGI  H+DT SAF   + +LSLG ++VMEFR P++G           A  L PR++  +TG +R  W+H + PRL D +DG+   R RRVS+TFR L  T      PD  D+    F ++  +   PT              +E+++VH FYET A+HFS TRH+PWPRVA FV  L
Sbjct:  236 YLPGQGISAHIDTHSAFTASIGTLSLGHASVMEFRHPEDGRCE--------AFLLEPRALYIMTGASRYQWTHCVQPRLFDVVDGQKVPRARRVSITFRKLQSTPCTCAFPDQCDS--QMFDAATAEKMFPTE-------------IEQKYVHDFYETIADHFSSTRHSPWPRVAEFVRGL 393
[Close]
BLAST of mRNA_M-pyrifera_M_contig118601.3842.1 vs. uniprot
Match: G4Z272_PHYSP (Fe2OG dioxygenase domain-containing protein n=1 Tax=Phytophthora sojae (strain P6497) TaxID=1094619 RepID=G4Z272_PHYSP)

HSP 1 Score: 130 bits (328), Expect = 5.480e-32
Identity = 78/180 (43.33%), Postives = 103/180 (57.22%), Query Frame = 1 
Query:    1 YLSGQGIRPHVDTRSAFGPVLASLSLGASAVMEFRPQEGESSPLPRSYVWAIDLPPRSVLFLTGDARNTWSHAIPPRLIDCIDGKTRQRDRRVSLTFRSLLPTAFDPPPPDDPDAPPASFHSSRLDSPSPTSTPTPTVVGPPAPAVEKEFVHQFYETAAEHFSDTRHTPWPRVAHFVASL 540
            YL GQGI  H+DT SAF   +ASLS+ +  VM+FR  +G  +         + LP RS+  ++G +R  W HAI PR  D IDGK   R RRVS+TFR +     + P P   D P      +  D    +     T + P A  +E+++VH+FYET A HFS TRH+PWPRVA FV+SL
Sbjct:  240 YLPGQGIAFHLDTHSAFTTTIASLSICSEVVMDFRHPDGVRNE-------GVLLPARSLAVMSGASRYMWEHAIVPRTFDVIDGKQVNRQRRVSITFRKIRSGLCECPFPKYCDTPGRDGQEAAGDDEQGSVAEETTSLAPTA--LEQQYVHEFYETVAAHFSSTRHSPWPRVAQFVSSL 410
[Close]
BLAST of mRNA_M-pyrifera_M_contig118601.3842.1 vs. uniprot
Match: H3G6A1_PHYRM (Fe2OG dioxygenase domain-containing protein n=1 Tax=Phytophthora ramorum TaxID=164328 RepID=H3G6A1_PHYRM)

HSP 1 Score: 128 bits (322), Expect = 1.120e-31
Identity = 79/180 (43.89%), Postives = 99/180 (55.00%), Query Frame = 1 
Query:    1 YLSGQGIRPHVDTRSAFGPVLASLSLGASAVMEFRPQEGESSPLPRSYVWAIDLPPRSVLFLTGDARNTWSHAIPPRLIDCIDGKTRQRDRRVSLTFRSLLPTAFDPPPPDDPDAPPASFHSSRLDSPSPTSTPTPTVVGPPAPAVEKEFVHQFYETAAEHFSDTRHTPWPRVAHFVASL 540
            YL GQGI  H+DT SAF   +ASLS+ +  VM+FR  +G            + LP RS+  ++G +R  W HAI PR  D IDGK   R RRVS+TFR +     + P P   D P      +  D      T        P  A+E++FVH+FYET A HFS TRH+PWPRVA FV SL
Sbjct:   92 YLPGQGIAFHLDTHSAFTTTIASLSICSEVVMDFRHPDGVRYE-------GVLLPARSLAVMSGASRYKWEHAIVPRTFDVIDGKQVNRQRRVSITFRKVRSGPCECPFPKYCDTPEREGQENTGDDDQEAITTAEASSLAPT-ALEQQFVHEFYETVAAHFSSTRHSPWPRVAEFVGSL 263
[Close]
BLAST of mRNA_M-pyrifera_M_contig118601.3842.1 vs. uniprot
Match: A0A2D4BEM1_PYTIN (Alkylated DNA repair protein alkB 8 n=1 Tax=Pythium insidiosum TaxID=114742 RepID=A0A2D4BEM1_PYTIN)

HSP 1 Score: 130 bits (326), Expect = 1.300e-31
Identity = 85/202 (42.08%), Postives = 107/202 (52.97%), Query Frame = 1 
Query:    1 YLSGQGIRPHVDTRSAFGPVLASLSLGASAVMEFRPQEGESSPLPRSYVWAIDLPPRSVLFLTGDARNTWSHAIPPRLIDCIDGKTRQRDRRVSLTFRSLLPTAFDPPPPDDPDAPPASFHSSRLDSPSPTSTPTPTVVGP--------------------PAPAVEKEFVHQFYETAAEHFSDTRHTPWPRVAHFVASLRP 546
            YL GQGI  H+DT SAF P +ASLSLG   VMEFR  +G           ++ L PRS+L +TG +R  W+HAIPPR  D IDG+   R RRVS+TFR +  T      P   DA        RL +    +T   +  G                     P P VE++FVH+FYET A+HFS TR+  WPR+A FV +L P
Sbjct:  771 YLPGQGIAAHIDTHSAFTPAIASLSLGHEIVMEFRHPDGVRCE-------SVLLQPRSLLIMTGASRYEWTHAIPPRAFDVIDGQRVDRQRRVSVTFRKIQDTPCRCAFPVQCDA--QRQEQERLQAKHGHATAQSSADGTTGDNAPDQDREDESASASLAPTP-VEQQFVHEFYETVAQHFSSTRYNAWPRIAAFVRALEP 962
[Close]
BLAST of mRNA_M-pyrifera_M_contig118601.3842.1 vs. uniprot
Match: K3WLA9_GLOUD (Fe2OG dioxygenase domain-containing protein n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3WLA9_GLOUD)

HSP 1 Score: 129 bits (324), Expect = 1.620e-31
Identity = 82/184 (44.57%), Postives = 102/184 (55.43%), Query Frame = 1 
Query:    1 YLSGQGIRPHVDTRSAFGPVLASLSLGASAVMEFRPQEGESSPLPRSYVWAIDLPPRSVLFLTGDARNTWSHAIPPRLIDCIDGKTRQRDRRVSLTFRSLLPT--AFDPPPPDDPDAPPASFHSSRLDSPSPTSTPTPTVVGPPAPAVEKEFVHQFYETAAEHFSDTRHTPWPRVAHFVASLRP 546
            Y  GQGI  H+DT SAF   +ASLSL    VMEFR  +G           ++   PRS+L +TG +R  W+HAIPPR+ D IDG+   R RRVS+TFR +  T    D P   D +       SS   + S      PT        VE+++VH+FYET A HFS TR+ PWPRVA FV SL P
Sbjct:  264 YKPGQGIAAHIDTHSAFTNAIASLSLENEIVMEFRHPDGRME--------SVLCQPRSLLVMTGPSRYEWTHAIPPRMFDVIDGEKVDRKRRVSITFRKIQETDCTCDFPVQCDSERDQNGAVSSPQTAGSNDEKLFPT-------HVEQQYVHEFYETVASHFSSTRYNPWPRVAAFVRSLEP 432
[Close]
BLAST of mRNA_M-pyrifera_M_contig118601.3842.1 vs. uniprot
Match: A0A6A3ECC1_9STRA (Alkylated DNA repair protein alkB 8 n=6 Tax=Phytophthora TaxID=4783 RepID=A0A6A3ECC1_9STRA)

HSP 1 Score: 129 bits (324), Expect = 1.650e-31
Identity = 80/188 (42.55%), Postives = 106/188 (56.38%), Query Frame = 1 
Query:    1 YLSGQGIRPHVDTRSAFGPVLASLSLGASAVMEFRPQEGESSPLPRSYVWAIDLPPRSVLFLTGDARNTWSHAIPPRLIDCIDGKTRQRDRRVSLTFRSL--------LPTAFDPPPPDDPDAPPASFHSSRLDSPSPTSTPTPTVVGPPAPAVEKEFVHQFYETAAEHFSDTRHTPWPRVAHFVASL 540
            YL GQGI  H+DT SAF   +ASLS+ +  VM+FR  +G  +         + LP RS+  ++G +R  W HAI PR  D IDGK   R RRVS+TFR +         P   D P  D  +A       S ++    T++  PT       A+E+++VH+FYET A HFS TRH+PWPRVA FV+SL
Sbjct:  241 YLPGQGIAFHLDTHSAFTTTIASLSICSEVVMDFRSLDGGRNE-------GVLLPARSLAVMSGASRYKWEHAIVPRTFDVIDGKQVTRQRRVSITFRKIRSGPCECRFPKYCDTPGRDGQEAVNDEERESAVEE---TTSLAPT-------ALEQQYVHEFYETVAAHFSSTRHSPWPRVAQFVSSL 411
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig118601.3842.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A1A7WMY8_9TELE2.350e-3341.46AlkB, alkylation repair homolog 8 (Fragment) n=1 T... [more]
A0A6G0WVE6_9STRA2.580e-3343.17Alkylated DNA repair protein alkB homolog 8 n=1 Ta... [more]
D0MUQ0_PHYIT2.670e-3344.15Alkylated DNA repair protein alkB 8 n=1 Tax=Phytop... [more]
A0A8K1C657_PYTOL1.250e-3245.99Uncharacterized protein n=1 Tax=Pythium oligandrum... [more]
A0A485LEX8_9STRA2.440e-3242.54Alkylated DNA repair protein alkB homolog 8 n=1 Ta... [more]
G4Z272_PHYSP5.480e-3243.33Fe2OG dioxygenase domain-containing protein n=1 Ta... [more]
H3G6A1_PHYRM1.120e-3143.89Fe2OG dioxygenase domain-containing protein n=1 Ta... [more]
A0A2D4BEM1_PYTIN1.300e-3142.08Alkylated DNA repair protein alkB 8 n=1 Tax=Pythiu... [more]
K3WLA9_GLOUD1.620e-3144.57Fe2OG dioxygenase domain-containing protein n=1 Ta... [more]
A0A6A3ECC1_9STRA1.650e-3142.55Alkylated DNA repair protein alkB 8 n=6 Tax=Phytop... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig118601contigM-pyrifera_M_contig118601:2..547 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score137.1
Seed ortholog evalue8.1e-30
Seed eggNOG ortholog4787.PITG_02033T0
Preferred nameALKBH8
KEGG koko:K10770,ko:K14685,ko:K17867,ko:K18670
KEGG TC2.A.100.1
KEGG Pathwayko04216,ko04978,map04216,map04978
Hectar predicted targeting categoryother localisation
GOsGO:0000049,GO:0001510,GO:0002097,GO:0002098,GO:0003674,GO:0003676,GO:0003723,GO:0003824,GO:0005488,GO:0005506,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005737,GO:0005829,GO:0006139,GO:0006396,GO:0006399,GO:0006400,GO:0006725,GO:0006807,GO:0006950,GO:0006974,GO:0008033,GO:0008150,GO:0008152,GO:0008168,GO:0008173,GO:0008175,GO:0008198,GO:0008270,GO:0009451,GO:0009987,GO:0010467,GO:0016070,GO:0016300,GO:0016491,GO:0016604,GO:0016705,GO:0016706,GO:0016740,GO:0016741,GO:0030488,GO:0031974,GO:0031981,GO:0032259,GO:0033554,GO:0034470,GO:0034641,GO:0034660,GO:0043167,GO:0043169,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0043412,GO:0043414,GO:0044237,GO:0044238,GO:0044260,GO:0044422,GO:0044424,GO:0044428,GO:0044444,GO:0044446,GO:0044451,GO:0044464,GO:0046483,GO:0046872,GO:0046914,GO:0050896,GO:0051213,GO:0051716,GO:0055114,GO:0070013,GO:0071704,GO:0090304,GO:0097159,GO:0140098,GO:0140101,GO:1901360,GO:1901363
EggNOG free text desc.Hypothetical methyltransferase
EggNOG OGs3QD55@4776,COG0500@1,COG3145@1,KOG1331@2759,KOG4176@2759
EC2.1.1.229,2.7.12.1
COG Functional cat.L
Best tax levelPeronosporales
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko01001,ko02000,ko03012,ko03016
Exons1
Model size546
Cds size546
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815705.5062003-CDS-M-pyrifera_M_contig118601:1..5471622815705.5062003-CDS-M-pyrifera_M_contig118601:1..547Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig118601 2..547 -
1692277530.8063138-CDS-M-pyrifera_M_contig118601:1..5471692277530.8063138-CDS-M-pyrifera_M_contig118601:1..547Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig118601 2..547 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig118601.3842.1prot_M-pyrifera_M_contig118601.3842.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig118601 2..547 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig118601.3842.1

>prot_M-pyrifera_M_contig118601.3842.1 ID=prot_M-pyrifera_M_contig118601.3842.1|Name=mRNA_M-pyrifera_M_contig118601.3842.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=182bp
YLSGQGIRPHVDTRSAFGPVLASLSLGASAVMEFRPQEGESSPLPRSYVW
AIDLPPRSVLFLTGDARNTWSHAIPPRLIDCIDGKTRQRDRRVSLTFRSL
LPTAFDPPPPDDPDAPPASFHSSRLDSPSPTSTPTPTVVGPPAPAVEKEF
VHQFYETAAEHFSDTRHTPWPRVAHFVASLRP
back to top

mRNA from alignment at M-pyrifera_M_contig118601:2..547-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig118601.3842.1 ID=mRNA_M-pyrifera_M_contig118601.3842.1|Name=mRNA_M-pyrifera_M_contig118601.3842.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=546bp|location=Sequence derived from alignment at M-pyrifera_M_contig118601:2..547- (Macrocystis pyrifera P11B4 male)
TATTTGAGTGGACAAGGGATTCGTCCACATGTTGATACACGATCTGCATT
TGGACCTGTTCTTGCCTCACTCTCATTGGGTGCTTCAGCTGTGATGGAGT
TTCGACCACAAGAAGGAGAATCGTCTCCCCTTCCAAGGTCTTATGTATGG
GCAATTGACCTCCCTCCTCGCTCTGTTCTCTTTTTGACTGGTGATGCAAG
GAATACATGGAGTCATGCGATTCCTCCACGCTTGATTGATTGTATTGATG
GAAAGACTAGGCAGCGAGATCGTCGTGTCTCTCTTACATTTCGGTCCCTT
CTCCCAACTGCATTTGATCCACCTCCACCAGATGACCCAGACGCACCACC
AGCCTCATTCCACTCCTCTCGTCTCGATTCTCCTTCCCCAACCTCCACCC
CAACACCGACTGTTGTCGGTCCACCTGCACCTGCTGTGGAGAAGGAATTT
GTCCATCAGTTTTATGAAACGGCTGCAGAACACTTTTCTGACACCAGACA
TACGCCATGGCCTCGCGTTGCACATTTCGTTGCATCTCTTCGCCCT
back to top

Coding sequence (CDS) from alignment at M-pyrifera_M_contig118601:2..547-

>mRNA_M-pyrifera_M_contig118601.3842.1 ID=mRNA_M-pyrifera_M_contig118601.3842.1|Name=mRNA_M-pyrifera_M_contig118601.3842.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=1092bp|location=Sequence derived from alignment at M-pyrifera_M_contig118601:2..547- (Macrocystis pyrifera P11B4 male)
TATTTGAGTGGACAAGGGATTCGTCCACATGTTGATACACGATCTGCATT
TGGACCTGTTCTTGCCTCACTCTCATTGGGTGCTTCAGCTGTGATGGAGT
TTCGACCACAAGAAGGAGAATCGTCTCCCCTTCCAAGGTCTTATGTATGG
GCAATTGACCTCCCTCCTCGCTCTGTTCTCTTTTTGACTGGTGATGCAAG
GAATACATGGAGTCATGCGATTCCTCCACGCTTGATTGATTGTATTGATG
GAAAGACTAGGCAGCGAGATCGTCGTGTCTCTCTTACATTTCGGTCCCTT
CTCCCAACTGCATTTGATCCACCTCCACCAGATGACCCAGACGCACCACC
AGCCTCATTCCACTCCTCTCGTCTCGATTCTCCTTCCCCAACCTCCACCC
CAACACCGACTGTTGTCGGTCCACCTGCACCTGCTGTGGAGAAGGAATTT
GTCCATCAGTTTTATGAAACGGCTGCAGAACACTTTTCTGACACCAGACA
TACGCCATGGCCTCGCGTTGCACATTTCGTTGCATCTCTTCGCCCTTATT
TGAGTGGACAAGGGATTCGTCCACATGTTGATACACGATCTGCATTTGGA
CCTGTTCTTGCCTCACTCTCATTGGGTGCTTCAGCTGTGATGGAGTTTCG
ACCACAAGAAGGAGAATCGTCTCCCCTTCCAAGGTCTTATGTATGGGCAA
TTGACCTCCCTCCTCGCTCTGTTCTCTTTTTGACTGGTGATGCAAGGAAT
ACATGGAGTCATGCGATTCCTCCACGCTTGATTGATTGTATTGATGGAAA
GACTAGGCAGCGAGATCGTCGTGTCTCTCTTACATTTCGGTCCCTTCTCC
CAACTGCATTTGATCCACCTCCACCAGATGACCCAGACGCACCACCAGCC
TCATTCCACTCCTCTCGTCTCGATTCTCCTTCCCCAACCTCCACCCCAAC
ACCGACTGTTGTCGGTCCACCTGCACCTGCTGTGGAGAAGGAATTTGTCC
ATCAGTTTTATGAAACGGCTGCAGAACACTTTTCTGACACCAGACATACG
CCATGGCCTCGCGTTGCACATTTCGTTGCATCTCTTCGCCCT
back to top