mRNA_M-pyrifera_M_contig118573.3835.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig118573.3835.1
Unique NamemRNA_M-pyrifera_M_contig118573.3835.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig118573.3835.1 vs. uniprot
Match: A0A812WTE2_9DINO (RplV protein n=1 Tax=Symbiodinium sp. KB8 TaxID=230985 RepID=A0A812WTE2_9DINO)

HSP 1 Score: 106 bits (265), Expect = 3.950e-26
Identity = 59/131 (45.04%), Postives = 86/131 (65.65%), Query Frame = 1
Query:    4 PAYTIEDA--GGEVGEGGLRRAWYRRKRVRGSYKKLLPLARQIRGMSVVEAMAQLTFSPKKRAEELRYALYRAATKAEFFHEMDPADLMVEEVLLEKGPMRRFHMRYHSRGRFGVNKIWDTRVKVVVREMT 390
            PAYTI D    G+  E  +R AW+ ++RV GS KKL+PL RQIRG+SV EA+AQ+ FS + R  E+  A+ RA   A+F+H++   +LM+++  + K    +  +R+HSRGRFGV     +RV + +REMT
Sbjct:   61 PAYTIVDVEEAGQDAEEDVRVAWFVKRRVAGSTKKLVPLLRQIRGLSVPEAIAQMEFSDRIRGPEVAKAIKRAVKNADFYHQLTANELMIDQAQVAKDGPTQKTLRFHSRGRFGVGAKQRSRVTIQLREMT 191          
BLAST of mRNA_M-pyrifera_M_contig118573.3835.1 vs. uniprot
Match: A0A5A8CP97_CAFRO (Uncharacterized protein n=3 Tax=Cafeteria roenbergensis TaxID=33653 RepID=A0A5A8CP97_CAFRO)

HSP 1 Score: 99.8 bits (247), Expect = 1.130e-23
Identity = 58/130 (44.62%), Postives = 82/130 (63.08%), Query Frame = 1
Query:    4 PAYTIEDAGGEVGEGGLRRAWYRRKRVRGSYKKLLPLARQIRGMSVVEAMAQLTFSPKKRAEELRYALYRAATKAEFFHEMDPADLMVEEVLLEKGPMRRFHMRYHSRGRFGVNKIWDTRVKVVVREMTP 393
            P YT+E+      +  +R  WY++  V GS KKL  LARQ+RG+S  EAMAQ+TF  K+RA  +RYA+ RA  +AE   ++   DL+V E   E    +   MRYH+RGRFG++ +  +RV+VV+RE  P
Sbjct:   41 PGYTVEEVSMPQSQD-IRFVWYKQANVPGSVKKLNILARQVRGLSAAEAMAQMTFDVKRRAPTMRYAIQRAVRRAEDRFDLFADDLIVHECTAEI-QRQEARMRYHARGRFGLSHMRRSRVRVVLREAFP 168          
BLAST of mRNA_M-pyrifera_M_contig118573.3835.1 vs. uniprot
Match: A0A7S1C6I4_9STRA (Hypothetical protein n=1 Tax=Bicosoecida sp. CB-2014 TaxID=1486930 RepID=A0A7S1C6I4_9STRA)

HSP 1 Score: 87.0 bits (214), Expect = 1.570e-17
Identity = 54/120 (45.00%), Postives = 72/120 (60.00%), Query Frame = 1
Query:   28 GGEVGEGGLRRAWYRRKRVRGSYKKLLPLARQIRGMSVVEAMAQLTFSPKKRAEELRYALYRAATKAEFFHEMDPADLMVEEVLLEKGPMRRFHMRYHSRGRFGVNKIWDTRVKVVVREM 387
            G   G  G   AW+ +K+VRGS KKL P+ R I G+SV EA+AQL FS K RA ++R+ + RAA  AE   ++ P  LMV+E  + K       MRYH+RGR    K+  ++V V VR M
Sbjct:  265 GAAAGGAGSATAWFTKKKVRGSVKKLSPITRLITGLSVPEALAQLAFSQKGRAADVRHCVARAAGNAEVHLDVPPERLMVQEAFVGKNEQYPA-MRYHARGRGSRAKMRYSQVTVKVRAM 383          
BLAST of mRNA_M-pyrifera_M_contig118573.3835.1 vs. uniprot
Match: H3GBT9_PHYRM (Uncharacterized protein n=15 Tax=Phytophthora TaxID=4783 RepID=H3GBT9_PHYRM)

HSP 1 Score: 69.3 bits (168), Expect = 5.180e-12
Identity = 40/107 (37.38%), Postives = 64/107 (59.81%), Query Frame = 1
Query:   73 RKRVRGSYKKLLPLARQIRGMSVVEAMAQLTFSPKKRAEELRYALYRAATKAEFFHEMDPADLMVEEVLLEKGPMRRFHMRYHSRGRFGVNKIWDTRVKVVVREMTP 393
            ++ +R S +KL  LA+QIRG+S  EA+ Q+ FSPK++AE  +  +  A   A+  ++++P +LMV E  + KG   +  +R   RGR GV     T + V++RE  P
Sbjct:   55 KRAIRASPRKLSYLAQQIRGLSASEAILQMKFSPKRKAEIFQKTVQNAINLADIKYQIEPENLMVSECFVNKGTFLK-RLRIMGRGRSGVMHHPHTHLTVILREFDP 160          
BLAST of mRNA_M-pyrifera_M_contig118573.3835.1 vs. uniprot
Match: A0A225X0G3_9STRA (Ribosomal protein L22 n=1 Tax=Phytophthora megakarya TaxID=4795 RepID=A0A225X0G3_9STRA)

HSP 1 Score: 68.9 bits (167), Expect = 7.390e-12
Identity = 41/107 (38.32%), Postives = 64/107 (59.81%), Query Frame = 1
Query:   73 RKRVRGSYKKLLPLARQIRGMSVVEAMAQLTFSPKKRAEELRYALYRAATKAEFFHEMDPADLMVEEVLLEKGPMRRFHMRYHSRGRFGVNKIWDTRVKVVVREMTP 393
            ++ +R S +KL  LA+QIRG+S  EA+ Q+ FSPK++AE  +  +  A   A+  ++++P +LMV E  + KG   +  +R   RGR GV     T + VV+RE  P
Sbjct:   58 KRAIRASPRKLTYLAQQIRGLSANEAILQMKFSPKRKAEIFKKTVQNAINLADIKYQIEPENLMVAECFVNKGTYLK-RLRIMGRGRSGVMHHPHTHLTVVLREYEP 163          
BLAST of mRNA_M-pyrifera_M_contig118573.3835.1 vs. uniprot
Match: A0A0P1B325_PLAHL (Ribosomal protein l22 n=1 Tax=Plasmopara halstedii TaxID=4781 RepID=A0A0P1B325_PLAHL)

HSP 1 Score: 70.9 bits (172), Expect = 8.600e-12
Identity = 41/107 (38.32%), Postives = 64/107 (59.81%), Query Frame = 1
Query:   73 RKRVRGSYKKLLPLARQIRGMSVVEAMAQLTFSPKKRAEELRYALYRAATKAEFFHEMDPADLMVEEVLLEKGPMRRFHMRYHSRGRFGVNKIWDTRVKVVVREMTP 393
            ++ +R S +KL  LA+QIRG+S  +A+ Q+ FSPK++AE  R  +  A   A+  ++++P +LMV E  + KG   +  +R   RGR GV     T + VV+RE  P
Sbjct:   66 KRAIRASPRKLTYLAQQIRGLSANDAILQMKFSPKRKAEHFRKTVQNAINLADIKYQIEPENLMVAECFVNKGTYLK-RLRIMGRGRSGVMHHPHTHITVVLREYDP 171          
BLAST of mRNA_M-pyrifera_M_contig118573.3835.1 vs. uniprot
Match: A0A484DSJ2_BRELC (Uncharacterized protein n=1 Tax=Bremia lactucae TaxID=4779 RepID=A0A484DSJ2_BRELC)

HSP 1 Score: 67.0 bits (162), Expect = 4.570e-11
Identity = 40/107 (37.38%), Postives = 63/107 (58.88%), Query Frame = 1
Query:   73 RKRVRGSYKKLLPLARQIRGMSVVEAMAQLTFSPKKRAEELRYALYRAATKAEFFHEMDPADLMVEEVLLEKGPMRRFHMRYHSRGRFGVNKIWDTRVKVVVREMTP 393
            ++ +R S +KL  LA+QIRG+S  EA+ Q+ FSPK++AE  +  +  A   A+  ++++P +LMV E  + KG   +  +R   RGR GV       + VV+RE  P
Sbjct:   66 KRAIRASPRKLAYLAQQIRGLSANEAILQMKFSPKRKAEIFQKTVQNAINLADIKYQLEPENLMVAECFVNKGTYLK-RLRIMGRGRSGVMHHPHMHLTVVLREFDP 171          
BLAST of mRNA_M-pyrifera_M_contig118573.3835.1 vs. uniprot
Match: A0A2P4WYX8_9STRA (Ribosomal protein L22 n=2 Tax=Phytophthora palmivora var. palmivora TaxID=611791 RepID=A0A2P4WYX8_9STRA)

HSP 1 Score: 66.6 bits (161), Expect = 5.890e-11
Identity = 39/107 (36.45%), Postives = 63/107 (58.88%), Query Frame = 1
Query:   73 RKRVRGSYKKLLPLARQIRGMSVVEAMAQLTFSPKKRAEELRYALYRAATKAEFFHEMDPADLMVEEVLLEKGPMRRFHMRYHSRGRFGVNKIWDTRVKVVVREMTP 393
            ++ +R S +KL  LA+QIRG+   EA+ Q+ FSPK++AE  +  +  A   A+  ++++P +LMV E  + KG   +  +R   RGR GV     T + V++RE  P
Sbjct:   57 KRAIRASPRKLTYLAQQIRGLPANEAILQMKFSPKRKAEIFKKTVQNAINLADIKYQIEPENLMVSECFVNKGTYLK-RLRIMGRGRSGVMHHPYTHLTVILREFEP 162          
BLAST of mRNA_M-pyrifera_M_contig118573.3835.1 vs. uniprot
Match: M4B411_HYAAE (Uncharacterized protein n=1 Tax=Hyaloperonospora arabidopsidis (strain Emoy2) TaxID=559515 RepID=M4B411_HYAAE)

HSP 1 Score: 66.6 bits (161), Expect = 6.090e-11
Identity = 39/104 (37.50%), Postives = 62/104 (59.62%), Query Frame = 1
Query:   73 RKRVRGSYKKLLPLARQIRGMSVVEAMAQLTFSPKKRAEELRYALYRAATKAEFFHEMDPADLMVEEVLLEKGPMRRFHMRYHSRGRFGVNKIWDTRVKVVVRE 384
            ++ +R S +KL  LA+Q+RG+S  EA+ Q+ FSPK++AE     +  A   A+  ++++P +L+V E  + KG   +  MR   RGR GV     T + VV+RE
Sbjct:   58 KRAIRASPRKLAYLAQQLRGLSATEALLQMKFSPKRKAEIFHKTVQNAINLADIKYQIEPENLLVAECFVNKGVYLK-RMRIMGRGRSGVMHHPHTHLTVVLRE 160          
BLAST of mRNA_M-pyrifera_M_contig118573.3835.1 vs. uniprot
Match: A7SGH1_NEMVE (39S ribosomal protein L22, mitochondrial (Fragment) n=1 Tax=Nematostella vectensis TaxID=45351 RepID=A7SGH1_NEMVE)

HSP 1 Score: 64.3 bits (155), Expect = 9.040e-11
Identity = 41/105 (39.05%), Postives = 63/105 (60.00%), Query Frame = 1
Query:   73 RKRVRGSYKKLLPLARQIRGMSVVEAMAQLTFSPKKRAEELRYALYRAATKAEFFHEM-DPADLMVEEVLLEKGPMRRFHMRYHSRGRFGVNKIWDTRVKVVVRE 384
            R+ VR   +K+  +ARQIRG+SV EA+ Q+ FSPKK A  ++  L  A   A+  + + D  +L V E  + KG   +  +RYH+RGRFG+  +  +   +V+RE
Sbjct:    8 RRSVRSGPRKMNLVARQIRGLSVTEAIKQMEFSPKKAATTVKEVLQEAQNTAQRNYGIEDKENLWVAESYVGKGKYFK-KLRYHARGRFGIEHVHYSHYFLVLRE 111          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig118573.3835.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A812WTE2_9DINO3.950e-2645.04RplV protein n=1 Tax=Symbiodinium sp. KB8 TaxID=23... [more]
A0A5A8CP97_CAFRO1.130e-2344.62Uncharacterized protein n=3 Tax=Cafeteria roenberg... [more]
A0A7S1C6I4_9STRA1.570e-1745.00Hypothetical protein n=1 Tax=Bicosoecida sp. CB-20... [more]
H3GBT9_PHYRM5.180e-1237.38Uncharacterized protein n=15 Tax=Phytophthora TaxI... [more]
A0A225X0G3_9STRA7.390e-1238.32Ribosomal protein L22 n=1 Tax=Phytophthora megakar... [more]
A0A0P1B325_PLAHL8.600e-1238.32Ribosomal protein l22 n=1 Tax=Plasmopara halstedii... [more]
A0A484DSJ2_BRELC4.570e-1137.38Uncharacterized protein n=1 Tax=Bremia lactucae Ta... [more]
A0A2P4WYX8_9STRA5.890e-1136.45Ribosomal protein L22 n=2 Tax=Phytophthora palmivo... [more]
M4B411_HYAAE6.090e-1137.50Uncharacterized protein n=1 Tax=Hyaloperonospora a... [more]
A7SGH1_NEMVE9.040e-1139.0539S ribosomal protein L22, mitochondrial (Fragment... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig118573contigM-pyrifera_M_contig118573:154..546 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score71.6
Seed ortholog evalue3e-10
Seed eggNOG ortholog4787.PITG_00523T0
KEGG koko:K02890
KEGG Pathwayko03010,map03010
KEGG ModuleM00178,M00179
Hectar predicted targeting categoryother localisation
GOsGO:0003674,GO:0003735,GO:0005198,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044424,GO:0044444,GO:0044464
EggNOG free text desc.Ribosomal protein L22p/L17e
EggNOG OGs3QBG2@4776,COG0091@1,KOG1711@2759
Ec32 ortholog descriptionRibosomal protein L22/L17
Ec32 orthologEc-04_002820.1
COG Functional cat.J
Best tax levelPeronosporales
Best eggNOG OGNA|NA|NA
BRITEbr01610,ko00000,ko00001,ko00002,ko03011
Exons1
Model size393
Cds size393
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815705.233064-CDS-M-pyrifera_M_contig118573:153..5461622815705.233064-CDS-M-pyrifera_M_contig118573:153..546Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig118573 154..546 +
1692277530.7134044-CDS-M-pyrifera_M_contig118573:153..5461692277530.7134044-CDS-M-pyrifera_M_contig118573:153..546Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig118573 154..546 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig118573.3835.1prot_M-pyrifera_M_contig118573.3835.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig118573 154..546 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig118573.3835.1

>prot_M-pyrifera_M_contig118573.3835.1 ID=prot_M-pyrifera_M_contig118573.3835.1|Name=mRNA_M-pyrifera_M_contig118573.3835.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=131bp
TPAYTIEDAGGEVGEGGLRRAWYRRKRVRGSYKKLLPLARQIRGMSVVEA
MAQLTFSPKKRAEELRYALYRAATKAEFFHEMDPADLMVEEVLLEKGPMR
RFHMRYHSRGRFGVNKIWDTRVKVVVREMTP
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mRNA from alignment at M-pyrifera_M_contig118573:154..546+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig118573.3835.1 ID=mRNA_M-pyrifera_M_contig118573.3835.1|Name=mRNA_M-pyrifera_M_contig118573.3835.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=393bp|location=Sequence derived from alignment at M-pyrifera_M_contig118573:154..546+ (Macrocystis pyrifera P11B4 male)
ACTCCTGCGTATACAATCGAAGATGCAGGTGGAGAAGTTGGAGAAGGAGG ATTGAGGAGGGCATGGTATCGTAGGAAGCGAGTTCGCGGTTCGTACAAGA AATTGCTGCCACTTGCAAGGCAAATTCGAGGCATGAGTGTTGTGGAAGCG ATGGCTCAGCTGACGTTCTCTCCGAAGAAGCGAGCAGAAGAGTTGAGGTA CGCCCTGTATCGCGCAGCCACGAAAGCAGAGTTTTTCCACGAGATGGACC CTGCTGATTTGATGGTAGAAGAGGTTTTGTTGGAAAAAGGTCCCATGCGC AGGTTCCACATGCGATACCACTCGCGGGGCCGCTTCGGAGTGAACAAAAT CTGGGACACCCGCGTCAAAGTAGTGGTTCGAGAAATGACGCCA
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig118573:154..546+

>mRNA_M-pyrifera_M_contig118573.3835.1 ID=mRNA_M-pyrifera_M_contig118573.3835.1|Name=mRNA_M-pyrifera_M_contig118573.3835.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=786bp|location=Sequence derived from alignment at M-pyrifera_M_contig118573:154..546+ (Macrocystis pyrifera P11B4 male)
ACTCCTGCGTATACAATCGAAGATGCAGGTGGAGAAGTTGGAGAAGGAGG
ATTGAGGAGGGCATGGTATCGTAGGAAGCGAGTTCGCGGTTCGTACAAGA
AATTGCTGCCACTTGCAAGGCAAATTCGAGGCATGAGTGTTGTGGAAGCG
ATGGCTCAGCTGACGTTCTCTCCGAAGAAGCGAGCAGAAGAGTTGAGGTA
CGCCCTGTATCGCGCAGCCACGAAAGCAGAGTTTTTCCACGAGATGGACC
CTGCTGATTTGATGGTAGAAGAGGTTTTGTTGGAAAAAGGTCCCATGCGC
AGGTTCCACATGCGATACCACTCGCGGGGCCGCTTCGGAGTGAACAAAAT
CTGGGACACCCGCGTCAAAGTAGTGGTTCGAGAAATGACGCCAACTCCTG
CGTATACAATCGAAGATGCAGGTGGAGAAGTTGGAGAAGGAGGATTGAGG
AGGGCATGGTATCGTAGGAAGCGAGTTCGCGGTTCGTACAAGAAATTGCT
GCCACTTGCAAGGCAAATTCGAGGCATGAGTGTTGTGGAAGCGATGGCTC
AGCTGACGTTCTCTCCGAAGAAGCGAGCAGAAGAGTTGAGGTACGCCCTG
TATCGCGCAGCCACGAAAGCAGAGTTTTTCCACGAGATGGACCCTGCTGA
TTTGATGGTAGAAGAGGTTTTGTTGGAAAAAGGTCCCATGCGCAGGTTCC
ACATGCGATACCACTCGCGGGGCCGCTTCGGAGTGAACAAAATCTGGGAC
ACCCGCGTCAAAGTAGTGGTTCGAGAAATGACGCCA
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