mRNA_M-pyrifera_M_contig118522.3828.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig118522.3828.1
Unique NamemRNA_M-pyrifera_M_contig118522.3828.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig118522.3828.1 vs. uniprot
Match: A0A8J1TNZ1_OWEFU (Ofus.G0539 protein n=1 Tax=Owenia fusiformis TaxID=6347 RepID=A0A8J1TNZ1_OWEFU)

HSP 1 Score: 126 bits (317), Expect = 4.980e-31
Identity = 74/158 (46.84%), Postives = 94/158 (59.49%), Query Frame = 1
Query:    4 VPPLEGFVMNRVMGDYFENLLYKIFVSLDERTTIIELATTLQVAVESVKQAISVYIRLGFAKKKNLDKLVADSSRDWHE----------------SWASTIRLQSATEEADEAAEDELGGPVKGKKSSHMEAFAARQGIASGTHKRVAFMFDSTITAY 429
            VPPLEGFVMNRV+GDYFE LLYKIFVS+DE TT+ ELA+ LQ+ ++ VK A+S+Y RLGFAKKKNLD  V D  + W E                 W++T+ L   TE +   +E E   P             A +    G  KR+AF+FDST+TA+
Sbjct:  236 VPPLEGFVMNRVLGDYFETLLYKIFVSIDEHTTVAELASVLQIDLQLVKNAVSMYCRLGFAKKKNLDTNVEDLHQSWKEIPNQNSKKPSQDQMLIDWSTTLELTPGTESS---SEQETTTP------DTQSLDGALESSTIGHSKRIAFLFDSTLTAF 384          
BLAST of mRNA_M-pyrifera_M_contig118522.3828.1 vs. uniprot
Match: A0A6J8CTR7_MYTCO (Uncharacterized protein n=2 Tax=Mytilus TaxID=6548 RepID=A0A6J8CTR7_MYTCO)

HSP 1 Score: 119 bits (299), Expect = 1.330e-28
Identity = 71/153 (46.41%), Postives = 92/153 (60.13%), Query Frame = 1
Query:    4 VPPLEGFVMNRVMGDYFENLLYKIFVSLDERTTIIELATTLQVAVESVKQAISVYIRLGFAKKKNLDKLVADSSRDWHESWASTIRLQS--------ATEEADEAAEDELGGPVKGKKS---SHMEAFAARQGIASGTHKRVAFMFDSTITAY 429
            VPPLEGFVMNRV+GDYFE LLYKIFVS+DE TT+ ELA  LQ+ +E VK A+S+Y RLGFAKKK  + + +D   D H SW S               T + ++    EL      ++    S +E     +   SG  KR+AF+FDST+TA+
Sbjct:  236 VPPLEGFVMNRVLGDYFETLLYKIFVSIDEHTTVSELANVLQIDLELVKNAVSMYCRLGFAKKKGAESINSD---DVHPSWTSVTHASKKPSSDQLIVTWKEEKVELKELADTTVQEEKRDVSALEKAMEEESATSGGSKRIAFLFDSTLTAF 385          
BLAST of mRNA_M-pyrifera_M_contig118522.3828.1 vs. uniprot
Match: UPI00065C0766 (protein FAM91A1 n=1 Tax=Aplysia californica TaxID=6500 RepID=UPI00065C0766)

HSP 1 Score: 119 bits (297), Expect = 2.490e-28
Identity = 72/169 (42.60%), Postives = 99/169 (58.58%), Query Frame = 1
Query:    1 SVPPLEGFVMNRVMGDYFENLLYKIFVSLDERTTIIELATTLQVAVESVKQAISVYIRLGFAKKKNLDKLVADSSRDWHES-----------------------WASTIRLQSATEEADEAAEDELGGPVKGKKSSHMEAFAARQGIASGTH---KRVAFMFDSTITAY 429
            SVPPLEGFVMNRV+GDYFE LLYKIFVS+DE T++ ELA  LQ+ +  VK A+S+Y RLGFAKKK++D  ++D    W+E                        ++S++ L+ A++     +   LGG V G  +    A      +  GT    KR+AF+FDST+TA+
Sbjct:  236 SVPPLEGFVMNRVLGDYFETLLYKIFVSIDEHTSVAELANVLQIDLSLVKNAVSMYCRLGFAKKKSVDFDLSDLHPSWNEQDSPTAGPSKSSPKVNEERQLLIDFSSSVSLE-ASDMNKSTSSTGLGGAVSGSAADAAIAAGLESNLDLGTQASVKRIAFLFDSTLTAF 403          
BLAST of mRNA_M-pyrifera_M_contig118522.3828.1 vs. uniprot
Match: A0A8J4V258_9MYCE (Uncharacterized protein n=1 Tax=Polysphondylium violaceum TaxID=133409 RepID=A0A8J4V258_9MYCE)

HSP 1 Score: 118 bits (295), Expect = 4.550e-28
Identity = 69/147 (46.94%), Postives = 95/147 (64.63%), Query Frame = 1
Query:    1 SVPPLEGFVMNRVMGDYFENLLYKIFVSLDERTTIIELATTLQVAVESVKQAISVYIRLGFAKKKNLDKLVADSSRD----WHESWASTIRLQSATEEADEAAEDELGGPVKGKKSSHMEAFAARQGIASGTHKRVAFMFDSTITAY 429
            SVPPLEGFVMNRV+GDYFENLLYKIFVS+DERTT+ EL+  LQ+ VE VKQA+S+YIRLGFAKKKN++ L           +H SW ++  + S ++E +++              S++        +     +R+ F+FDS+ITA+
Sbjct:  243 SVPPLEGFVMNRVLGDYFENLLYKIFVSIDERTTVQELSEVLQIDVELVKQAVSLYIRLGFAKKKNIEPLQQTLDDQVVSKFHSSWINSS-VGSGSKEENQSLXXXXXXXXXXXXDSNINE------LEDNDLQRIGFIFDSSITAF 382          
BLAST of mRNA_M-pyrifera_M_contig118522.3828.1 vs. uniprot
Match: A0A0L0FEK8_9EUKA (Uncharacterized protein n=2 Tax=Sphaeroforma arctica JP610 TaxID=667725 RepID=A0A0L0FEK8_9EUKA)

HSP 1 Score: 117 bits (293), Expect = 8.450e-28
Identity = 72/148 (48.65%), Postives = 92/148 (62.16%), Query Frame = 1
Query:    1 SVPPLEGFVMNRVMGDYFENLLYKIFVSLDERTTIIELATTLQVAVESVKQAISVYIRLGFAKKKNLDKLVADSSRDWHESWASTIR----LQSATEEADEAAEDELGGPVKGKKSSHMEAFAARQGIASG-THKRVAFMFDSTITAY 429
            SVPPLEGFVMNRV+GDYFE LLYK+FV++DE TT+ ELA  LQ+ ++ +K AISVY RLGFA KK  DK+ +  +R+ H SW  T      L +  +E D    D  GG          E F     I  G + KRV F+FDS++TA+
Sbjct:  161 SVPPLEGFVMNRVLGDYFETLLYKLFVTVDETTTVAELANILQMPIQLIKNAISVYCRLGFAIKKGTDKITSTDNREVHNSWLGTTGGSEILPAMLQEKDC---DGAGG------DGRSEYF-----IGQGPSQKRVGFIFDSSLTAF 294          
BLAST of mRNA_M-pyrifera_M_contig118522.3828.1 vs. uniprot
Match: A0A0D2WN21_CAPO3 (Uncharacterized protein n=2 Tax=Capsaspora owczarzaki (strain ATCC 30864) TaxID=595528 RepID=A0A0D2WN21_CAPO3)

HSP 1 Score: 117 bits (293), Expect = 8.510e-28
Identity = 72/143 (50.35%), Postives = 88/143 (61.54%), Query Frame = 1
Query:    1 SVPPLEGFVMNRVMGDYFENLLYKIFVSLDERTTIIELATTLQVAVESVKQAISVYIRLGFAKKKNLDKLVADSSRDWHESWASTIRLQSATEEADEAAEDELGGPVKGKKSSHMEAFAARQGIASGTHKRVAFMFDSTITAY 429
            +VPPLEGFVMNRV GDYFE LLYKIFV++DE TTI +LA  LQ  +ESVK A+SVY RLGFAKKKN++ L  D  R WH SW S +  + +             G  K +      A +          KRVAF+FDST+TA+
Sbjct:  275 AVPPLEGFVMNRVTGDYFETLLYKIFVTIDEHTTIADLAAVLQTDLESVKHAVSVYCRLGFAKKKNVE-LDVDDVR-WHLSWISRVVHRRS-------------GSTKAETQDVQPAAST---------KRVAFLFDSTLTAF 393          
BLAST of mRNA_M-pyrifera_M_contig118522.3828.1 vs. uniprot
Match: A0A2C9JQZ9_BIOGL (Uncharacterized protein n=1 Tax=Biomphalaria glabrata TaxID=6526 RepID=A0A2C9JQZ9_BIOGL)

HSP 1 Score: 117 bits (293), Expect = 8.590e-28
Identity = 69/161 (42.86%), Postives = 101/161 (62.73%), Query Frame = 1
Query:    1 SVPPLEGFVMNRVMGDYFENLLYKIFVSLDERTTIIELATTLQVAVESVKQAISVYIRLGFAKKKNLDKLVADSSRDWHESWASTIR-LQSATEEADE-----------AAEDELGGPVKGKKSSHMEAFAAR-----QGIAS-GTHKRVAFMFDSTITAY 429
            SVPPLEGFVMNRV+GDYFE LLYKIFVS+DE+T + ELA+ LQ+ +  VK A+S+Y RLGFAKKK+ D  +++    W+ +  S +    S T ++D+           +   ++GG +    S H ++   +       I + G +KR+AF+FDST+TA+
Sbjct:  237 SVPPLEGFVMNRVLGDYFETLLYKIFVSIDEQTPVAELASVLQIDLALVKNAVSMYCRLGFAKKKSTDYELSELHPSWNSNQESPVSGPNSKTSKSDQERTLLIDDLSSSVHLDIGGEISKSNSIHDDSMLTKLDQLDSNIQTPGLNKRIAFLFDSTLTAF 397          
BLAST of mRNA_M-pyrifera_M_contig118522.3828.1 vs. uniprot
Match: A0A7R9F0D0_9NEOP (Hypothetical protein n=2 Tax=Timema TaxID=61471 RepID=A0A7R9F0D0_9NEOP)

HSP 1 Score: 117 bits (293), Expect = 8.680e-28
Identity = 68/148 (45.95%), Postives = 89/148 (60.14%), Query Frame = 1
Query:    4 VPPLEGFVMNRVMGDYFENLLYKIFVSLDERTTIIELATTLQVAVESVKQAISVYIRLGFAKKKNLDKLVADSSRDWHESWASTIRLQSATEE------ADEAAEDELGGPVKGKKSSHMEAFAARQGIASGTHKRVAFMFDSTITAY 429
            VPPLEGFVMNRV+GDYFE LLYKIFVS+DE T++ ELA+ LQ+  ESVK A+S+Y RLGFA+KKN D  + D    W  S  +  +  S  +           +E  L    +   S   EA +    +     KR+AF+FDST+TA+
Sbjct:  235 VPPLEGFVMNRVLGDYFETLLYKIFVSIDEHTSVGELASVLQIDAESVKNAVSLYCRLGFARKKNQDSELTDLHPSWRNSSNAARKSVSVLDGPLLLDLTSVLSESGLSPTDETTSSGTEEADSTFLSVGQSRSKRIAFLFDSTLTAF 382          
BLAST of mRNA_M-pyrifera_M_contig118522.3828.1 vs. uniprot
Match: A0A7R9JXU6_TIMGE (Hypothetical protein n=1 Tax=Timema genevievae TaxID=629358 RepID=A0A7R9JXU6_TIMGE)

HSP 1 Score: 117 bits (293), Expect = 8.700e-28
Identity = 68/148 (45.95%), Postives = 89/148 (60.14%), Query Frame = 1
Query:    4 VPPLEGFVMNRVMGDYFENLLYKIFVSLDERTTIIELATTLQVAVESVKQAISVYIRLGFAKKKNLDKLVADSSRDWHESWASTIRLQSATEE------ADEAAEDELGGPVKGKKSSHMEAFAARQGIASGTHKRVAFMFDSTITAY 429
            VPPLEGFVMNRV+GDYFE LLYKIFVS+DE T++ ELA+ LQ+  ESVK A+S+Y RLGFA+KKN D  + D    W  S  +  +  S  +           +E  L    +   S   EA +    +     KR+AF+FDST+TA+
Sbjct:  310 VPPLEGFVMNRVLGDYFETLLYKIFVSIDEHTSVGELASVLQIDAESVKNAVSLYCRLGFARKKNQDSELTDLHPSWRNSSNAARKSVSVLDGPLLLDLTSVLSESGLSPTDETTSSGTEEADSTFLSVGQSRSKRIAFLFDSTLTAF 457          
BLAST of mRNA_M-pyrifera_M_contig118522.3828.1 vs. uniprot
Match: UPI001EE60FE9 (LOW QUALITY PROTEIN: protein FAM91A1-like n=2 Tax=Haliotis TaxID=6452 RepID=UPI001EE60FE9)

HSP 1 Score: 116 bits (290), Expect = 2.170e-27
Identity = 69/160 (43.12%), Postives = 96/160 (60.00%), Query Frame = 1
Query:    4 VPPLEGFVMNRVMGDYFENLLYKIFVSLDERTTIIELATTLQVAVESVKQAISVYIRLGFAKKKNLDKLVADSSRDWHESWASTIR---LQSATEE---------------ADEAAEDELGGPVKGKKSSHMEAFAARQGIASGTHKRVAFMFDSTITAY 429
            VPPLEGFVMNRV+GDYFE LLYKIFVS+DE TT+ ELA+ LQ+ ++ VK A+S+Y RLGFAKKK +D    +    W +    T +   +Q ++++               +D    D L        SS +E+   +    SG +KR+AF+FDST+TA+
Sbjct:  236 VPPLEGFVMNRVLGDYFETLLYKIFVSIDEHTTVSELASVLQIDLQLVKNAVSMYCRLGFAKKKTIDLNPYEVHPSWTQQAPKTAKTPVMQKSSQDLLIDLSNAMDVDLTVSDHFESDNLNSNSNADASS-IESAIEQSNQTSGQNKRIAFLFDSTLTAF 394          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig118522.3828.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A8J1TNZ1_OWEFU4.980e-3146.84Ofus.G0539 protein n=1 Tax=Owenia fusiformis TaxID... [more]
A0A6J8CTR7_MYTCO1.330e-2846.41Uncharacterized protein n=2 Tax=Mytilus TaxID=6548... [more]
UPI00065C07662.490e-2842.60protein FAM91A1 n=1 Tax=Aplysia californica TaxID=... [more]
A0A8J4V258_9MYCE4.550e-2846.94Uncharacterized protein n=1 Tax=Polysphondylium vi... [more]
A0A0L0FEK8_9EUKA8.450e-2848.65Uncharacterized protein n=2 Tax=Sphaeroforma arcti... [more]
A0A0D2WN21_CAPO38.510e-2850.35Uncharacterized protein n=2 Tax=Capsaspora owczarz... [more]
A0A2C9JQZ9_BIOGL8.590e-2842.86Uncharacterized protein n=1 Tax=Biomphalaria glabr... [more]
A0A7R9F0D0_9NEOP8.680e-2845.95Hypothetical protein n=2 Tax=Timema TaxID=61471 Re... [more]
A0A7R9JXU6_TIMGE8.700e-2845.95Hypothetical protein n=1 Tax=Timema genevievae Tax... [more]
UPI001EE60FE92.170e-2743.13LOW QUALITY PROTEIN: protein FAM91A1-like n=2 Tax=... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig118522contigM-pyrifera_M_contig118522:119..547 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeMetazoa
Seed ortholog score107.8
Seed ortholog evalue3.9e-21
Seed eggNOG ortholog27923.ML05082a-PA
Preferred nameFAM91A1
Hectar predicted targeting categoryother localisation
GOsGO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005794,GO:0005802,GO:0012505,GO:0031984,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044422,GO:0044424,GO:0044431,GO:0044444,GO:0044446,GO:0044464,GO:0098791
EggNOG free text desc.FAM91 C-terminus
EggNOG OGs38KV8@33154,3BEFB@33208,KOG3707@1,KOG3707@2759
COG Functional cat.S
Best tax levelMetazoa
Best eggNOG OGNA|NA|NA
Exons1
Model size429
Cds size402
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815704.9128346-UTR-M-pyrifera_M_contig118522:118..1451622815704.9128346-UTR-M-pyrifera_M_contig118522:118..145Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig118522 119..145 +
1692277530.5837584-UTR-M-pyrifera_M_contig118522:118..1451692277530.5837584-UTR-M-pyrifera_M_contig118522:118..145Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig118522 119..145 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815704.9325902-CDS-M-pyrifera_M_contig118522:145..5471622815704.9325902-CDS-M-pyrifera_M_contig118522:145..547Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig118522 146..547 +
1692277530.6033657-CDS-M-pyrifera_M_contig118522:145..5471692277530.6033657-CDS-M-pyrifera_M_contig118522:145..547Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig118522 146..547 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig118522.3828.1prot_M-pyrifera_M_contig118522.3828.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig118522 146..547 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig118522.3828.1

>prot_M-pyrifera_M_contig118522.3828.1 ID=prot_M-pyrifera_M_contig118522.3828.1|Name=mRNA_M-pyrifera_M_contig118522.3828.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=134bp
MNRVMGDYFENLLYKIFVSLDERTTIIELATTLQVAVESVKQAISVYIRL
GFAKKKNLDKLVADSSRDWHESWASTIRLQSATEEADEAAEDELGGPVKG
KKSSHMEAFAARQGIASGTHKRVAFMFDSTITAY
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mRNA from alignment at M-pyrifera_M_contig118522:119..547+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig118522.3828.1 ID=mRNA_M-pyrifera_M_contig118522.3828.1|Name=mRNA_M-pyrifera_M_contig118522.3828.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=429bp|location=Sequence derived from alignment at M-pyrifera_M_contig118522:119..547+ (Macrocystis pyrifera P11B4 male)
TCAGTGCCGCCGTTGGAGGGCTTTGTGATGAACCGTGTGATGGGTGACTA CTTTGAAAACCTTCTCTACAAGATCTTCGTGTCGCTGGACGAGCGCACGA CGATCATCGAGCTGGCGACGACGTTGCAGGTGGCGGTGGAGTCGGTGAAG CAGGCGATCTCGGTCTACATCCGGCTGGGGTTCGCCAAGAAGAAGAACCT CGACAAGCTGGTGGCGGACAGCAGCAGGGATTGGCACGAGAGCTGGGCCA GCACCATCAGGCTGCAGAGCGCGACGGAGGAGGCGGACGAGGCGGCGGAG GACGAGCTGGGCGGCCCCGTCAAGGGCAAGAAGAGCTCCCACATGGAGGC CTTTGCGGCGCGGCAGGGCATCGCCAGCGGCACGCACAAGCGCGTGGCGT TCATGTTCGACTCGACGATCACCGCCTAC
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig118522:119..547+

>mRNA_M-pyrifera_M_contig118522.3828.1 ID=mRNA_M-pyrifera_M_contig118522.3828.1|Name=mRNA_M-pyrifera_M_contig118522.3828.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=804bp|location=Sequence derived from alignment at M-pyrifera_M_contig118522:119..547+ (Macrocystis pyrifera P11B4 male)
ATGAACCGTGTGATGGGTGACTACTTTGAAAACCTTCTCTACAAGATCTT
CGTGTCGCTGGACGAGCGCACGACGATCATCGAGCTGGCGACGACGTTGC
AGGTGGCGGTGGAGTCGGTGAAGCAGGCGATCTCGGTCTACATCCGGCTG
GGGTTCGCCAAGAAGAAGAACCTCGACAAGCTGGTGGCGGACAGCAGCAG
GGATTGGCACGAGAGCTGGGCCAGCACCATCAGGCTGCAGAGCGCGACGG
AGGAGGCGGACGAGGCGGCGGAGGACGAGCTGGGCGGCCCCGTCAAGGGC
AAGAAGAGCTCCCACATGGAGGCCTTTGCGGCGCGGCAGGGCATCGCCAG
CGGCACGCACAAGCGCGTGGCGTTCATGTTCGACTCGACGATCACCGCCT
ACATGAACCGTGTGATGGGTGACTACTTTGAAAACCTTCTCTACAAGATC
TTCGTGTCGCTGGACGAGCGCACGACGATCATCGAGCTGGCGACGACGTT
GCAGGTGGCGGTGGAGTCGGTGAAGCAGGCGATCTCGGTCTACATCCGGC
TGGGGTTCGCCAAGAAGAAGAACCTCGACAAGCTGGTGGCGGACAGCAGC
AGGGATTGGCACGAGAGCTGGGCCAGCACCATCAGGCTGCAGAGCGCGAC
GGAGGAGGCGGACGAGGCGGCGGAGGACGAGCTGGGCGGCCCCGTCAAGG
GCAAGAAGAGCTCCCACATGGAGGCCTTTGCGGCGCGGCAGGGCATCGCC
AGCGGCACGCACAAGCGCGTGGCGTTCATGTTCGACTCGACGATCACCGC
CTAC
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