mRNA_M-pyrifera_M_contig11850.3823.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig11850.3823.1
Unique NamemRNA_M-pyrifera_M_contig11850.3823.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig11850.3823.1 vs. uniprot
Match: A0A1X7TYF9_AMPQE (Dimer_Tnp_hAT domain-containing protein n=1 Tax=Amphimedon queenslandica TaxID=400682 RepID=A0A1X7TYF9_AMPQE)

HSP 1 Score: 75.5 bits (184), Expect = 2.680e-13
Identity = 43/130 (33.08%), Postives = 73/130 (56.15%), Query Frame = 1
Query:    4 RKLLLMYKAARVIYPRTISLYADAHAVELKWLLGFKFVTPELLLELKAELVVYFPLVKNIPDLSISTRDIWLAHKQQLPKWFGLVRRIWLIQSSSAIMERAFSVMNNIFGAQQTSLLNDLFELSVMLRHN 393
            + ++ ++KAAR   P+ I      HA +L  L    F+  + + ELK+EL  Y    K+I D  +   + W  ++  LP W    ++++L+Q SSA +ER FS++ + FG +Q + L D  E S+ML++N
Sbjct:  523 KSIMAIFKAARYFSPQMIC-SLKPHASDLNQLACISFINSQAIEELKSELPKYMARAKDI-DKEVCPLNWWKQNQDDLPVWSREAKKVFLLQPSSASVERVFSLLKSSFGDKQETALQDYIEASLMLQYN 650          
BLAST of mRNA_M-pyrifera_M_contig11850.3823.1 vs. uniprot
Match: A0A2B4RAU9_STYPI (Putative RNA-directed DNA polymerase from transposon BS n=2 Tax=Stylophora pistillata TaxID=50429 RepID=A0A2B4RAU9_STYPI)

HSP 1 Score: 75.1 bits (183), Expect = 3.870e-13
Identity = 50/129 (38.76%), Postives = 68/129 (52.71%), Query Frame = 1
Query:   22 YKAARVIYPRTISLYADAHAVELKWLLGFKFVTPELLLELKAELVVYFPLVKNIPD-LSISTRDI----WLAHKQQLPKWFGLVRRIWLIQSSSAIMERAFSVMNNIFGAQQTSLLNDLFELSVMLRHN 393
            +KAAR+  P  +    +  A  L+ L  F F   +  +   A L   FPL     D ++++  D     W  HK  LP W  LV+++ LIQ SSA  ER FS++ N FG+QQ S L D  E SVMLR+N
Sbjct: 1102 FKAARLCCPVQVQAL-NPTAASLEELRNFPFANHDATI---ANLAQEFPLYVAASDGVTVTCEDDKLTWWANHKDTLPHWSSLVKKLLLIQPSSASAERVFSLLTNAFGSQQESALQDYLEASVMLRYN 1226          
BLAST of mRNA_M-pyrifera_M_contig11850.3823.1 vs. uniprot
Match: A0A432I446_9GAMM (Dimer_Tnp_hAT domain-containing protein n=1 Tax=Gammaproteobacteria bacterium TaxID=1913989 RepID=A0A432I446_9GAMM)

HSP 1 Score: 72.8 bits (177), Expect = 2.330e-12
Identity = 48/131 (36.64%), Postives = 68/131 (51.91%), Query Frame = 1
Query:    4 RKLLLMYKAARVIYPRTISLYADAHAVELKWLLGFKFVTPELLLELKAELVVYFPLVKNIPDLSISTRDIWLAHKQQ-LPKWFGLVRRIWLIQSSSAIMERAFSVMNNIFGAQQTSLLNDLFELSVMLRHN 393
            R ++  +K AR+  P  + L    +A  L+    F FV    +  L AEL  Y      I DLS   +  W A +   LP W  LVR++ LIQ SSA  ER FS+++ +  +QQ + L D  E SVM+R+N
Sbjct:  490 RNIVRAFKVARLCCPVQVQLLIP-NAAALQEFKNFHFVDDNTIANLAAELPAYLAAADGIVDLSEEQKLAWWAARHHTLPHWASLVRKLLLIQPSSAASERVFSLLSTL-SSQQDNALEDYIEASVMIRYN 618          
BLAST of mRNA_M-pyrifera_M_contig11850.3823.1 vs. uniprot
Match: A0A2B4RHQ8_STYPI (Dimer_Tnp_hAT domain-containing protein n=2 Tax=Stylophora pistillata TaxID=50429 RepID=A0A2B4RHQ8_STYPI)

HSP 1 Score: 71.2 bits (173), Expect = 8.240e-12
Identity = 40/88 (45.45%), Postives = 51/88 (57.95%), Query Frame = 1
Query:  145 AELVVYFPLVKNIPD-LSISTRDI----WLAHKQQLPKWFGLVRRIWLIQSSSAIMERAFSVMNNIFGAQQTSLLNDLFELSVMLRHN 393
            A L   FPL     D ++++  D     W  HK  LP W  LV+++ LIQ SSA  ER FS++ N FG+QQ S L D  E SVMLR+N
Sbjct:  664 ANLAQEFPLYLAASDGVTVTCEDDKLTWWANHKDTLPHWSSLVKKLLLIQPSSASAERVFSLLTNAFGSQQESALQDYLEASVMLRYN 751          
BLAST of mRNA_M-pyrifera_M_contig11850.3823.1 vs. uniprot
Match: A0A2B4S6X8_STYPI (Dimer_Tnp_hAT domain-containing protein n=1 Tax=Stylophora pistillata TaxID=50429 RepID=A0A2B4S6X8_STYPI)

HSP 1 Score: 68.6 bits (166), Expect = 3.130e-11
Identity = 45/128 (35.16%), Postives = 65/128 (50.78%), Query Frame = 1
Query:   22 YKAARVIYPRTISLYADAHAVELKWLLGFKFVTPELLLELKAELVVYFPLVKNIPDLSISTRDI----WLAHKQQLPKWFGLVRRIWLIQSSSAIMERAFSVMNNIFGAQQTSLLNDLFELSVMLRHN 393
            +KAAR+  P  +       AV ++ L  F F+T   +++L  EL  Y   +      +I T +     W  H   LP W   V++I L+Q SSA  ER FS++ N F  QQ + L +  E SVMLR+N
Sbjct:  138 FKAARLCCPVQVQALRPT-AVSVQDLKQFSFITDAEVVQLVEELPNY---LATADGAAIETEEDKVHWWATHAAALPNWSAAVKKILLVQPSSASAERVFSLLQNAFSKQQEAALEETVETSVMLRYN 261          
BLAST of mRNA_M-pyrifera_M_contig11850.3823.1 vs. uniprot
Match: UPI000C051ABC (uncharacterized protein LOC111330574 n=1 Tax=Stylophora pistillata TaxID=50429 RepID=UPI000C051ABC)

HSP 1 Score: 68.6 bits (166), Expect = 5.500e-11
Identity = 45/128 (35.16%), Postives = 65/128 (50.78%), Query Frame = 1
Query:   22 YKAARVIYPRTISLYADAHAVELKWLLGFKFVTPELLLELKAELVVYFPLVKNIPDLSISTRDI----WLAHKQQLPKWFGLVRRIWLIQSSSAIMERAFSVMNNIFGAQQTSLLNDLFELSVMLRHN 393
            +KAAR+  P  +       AV ++ L  F F+T   +++L  EL  Y   +      +I T +     W  H   LP W   V++I L+Q SSA  ER FS++ N F  QQ + L +  E SVMLR+N
Sbjct:  224 FKAARLCCPVQVQALRPT-AVSVQDLKQFSFITDAEVVQLVEELPNY---LATADGAAIETEEDKVHWWATHAAALPNWSAAVKKILLVQPSSASAERVFSLLQNAFSKQQEAALEETVETSVMLRYN 347          
BLAST of mRNA_M-pyrifera_M_contig11850.3823.1 vs. uniprot
Match: A0A2B4RB71_STYPI (Dimer_Tnp_hAT domain-containing protein n=2 Tax=Stylophora pistillata TaxID=50429 RepID=A0A2B4RB71_STYPI)

HSP 1 Score: 68.6 bits (166), Expect = 7.060e-11
Identity = 45/128 (35.16%), Postives = 65/128 (50.78%), Query Frame = 1
Query:   22 YKAARVIYPRTISLYADAHAVELKWLLGFKFVTPELLLELKAELVVYFPLVKNIPDLSISTRDI----WLAHKQQLPKWFGLVRRIWLIQSSSAIMERAFSVMNNIFGAQQTSLLNDLFELSVMLRHN 393
            +KAAR+  P  +       AV ++ L  F F+T   +++L  EL  Y   +      +I T +     W  H   LP W   V++I L+Q SSA  ER FS++ N F  QQ + L +  E SVMLR+N
Sbjct:  503 FKAARLCCPVQVQALRPT-AVSVQDLKQFSFITDAEVVQLVEELPNY---LATADGAAIETEEDKVHWWATHAAALPNWSAAVKKILLVQPSSASAERVFSLLQNAFSKQQEAALEETVETSVMLRYN 626          
BLAST of mRNA_M-pyrifera_M_contig11850.3823.1 vs. uniprot
Match: A0A2B4S074_STYPI (Waprin-Phi3 n=1 Tax=Stylophora pistillata TaxID=50429 RepID=A0A2B4S074_STYPI)

HSP 1 Score: 68.6 bits (166), Expect = 7.450e-11
Identity = 45/128 (35.16%), Postives = 65/128 (50.78%), Query Frame = 1
Query:   22 YKAARVIYPRTISLYADAHAVELKWLLGFKFVTPELLLELKAELVVYFPLVKNIPDLSISTRDI----WLAHKQQLPKWFGLVRRIWLIQSSSAIMERAFSVMNNIFGAQQTSLLNDLFELSVMLRHN 393
            +KAAR+  P  +       AV ++ L  F F+T   +++L  EL  Y   +      +I T +     W  H   LP W   V++I L+Q SSA  ER FS++ N F  QQ + L +  E SVMLR+N
Sbjct:  966 FKAARLCCPVQVQALRPT-AVSVQDLKQFSFITDAEVVQLVEELPNY---LATADGAAIETEEDKVHWWATHAAALPNWSAAVKKILLVQPSSASAERVFSLLQNAFSKQQEAALEETVETSVMLRYN 1089          
BLAST of mRNA_M-pyrifera_M_contig11850.3823.1 vs. uniprot
Match: A0A2B4R5H2_STYPI (Uncharacterized protein K02A2.6 n=3 Tax=Stylophora pistillata TaxID=50429 RepID=A0A2B4R5H2_STYPI)

HSP 1 Score: 68.6 bits (166), Expect = 7.590e-11
Identity = 45/128 (35.16%), Postives = 65/128 (50.78%), Query Frame = 1
Query:   22 YKAARVIYPRTISLYADAHAVELKWLLGFKFVTPELLLELKAELVVYFPLVKNIPDLSISTRDI----WLAHKQQLPKWFGLVRRIWLIQSSSAIMERAFSVMNNIFGAQQTSLLNDLFELSVMLRHN 393
            +KAAR+  P  +       AV ++ L  F F+T   +++L  EL  Y   +      +I T +     W  H   LP W   V++I L+Q SSA  ER FS++ N F  QQ + L +  E SVMLR+N
Sbjct: 1360 FKAARLCCPVQVQALRPT-AVSVQDLKQFSFITDAEVVQLVEELPNY---LATADGAAIETEEDKVHWWATHAAALPNWSAAVKKILLVQPSSASAERVFSLLQNAFSKQQEAALEETVETSVMLRYN 1483          
BLAST of mRNA_M-pyrifera_M_contig11850.3823.1 vs. uniprot
Match: A0A2B4SBT4_STYPI (Dimer_Tnp_hAT domain-containing protein n=1 Tax=Stylophora pistillata TaxID=50429 RepID=A0A2B4SBT4_STYPI)

HSP 1 Score: 63.5 bits (153), Expect = 7.820e-10
Identity = 40/127 (31.50%), Postives = 70/127 (55.12%), Query Frame = 1
Query:   22 YKAARVIYPRTISLYADAHAVELKWLLGFKFVTPELLLE-LKAELVVYFPLVKNIPDLSISTRDI--WLAHKQQLPKWFGLVRRIWLIQSSSAIMERAFSVMNNIFGAQQTSLLNDLFELSVMLRHN 393
            +KAARV+ P  +  +       ++ L  F F+  +  ++ L  EL  Y    +++P +    R +  W  H+++LP W   V+++ L+Q SSA  ER FS+++  F  QQ + L+D  + SVML++N
Sbjct:   56 FKAARVMCPMIVG-WLRPTRTRVEALGIFPFLDNDATIDGLVRELPQYITATQDVP-IECEGRKVEWWKVHEERLPNWSSAVKKVLLVQPSSAAAERVFSLLSASFHEQQENALSDYLQASVMLQYN 180          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig11850.3823.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 18
Match NameE-valueIdentityDescription
A0A1X7TYF9_AMPQE2.680e-1333.08Dimer_Tnp_hAT domain-containing protein n=1 Tax=Am... [more]
A0A2B4RAU9_STYPI3.870e-1338.76Putative RNA-directed DNA polymerase from transpos... [more]
A0A432I446_9GAMM2.330e-1236.64Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ga... [more]
A0A2B4RHQ8_STYPI8.240e-1245.45Dimer_Tnp_hAT domain-containing protein n=2 Tax=St... [more]
A0A2B4S6X8_STYPI3.130e-1135.16Dimer_Tnp_hAT domain-containing protein n=1 Tax=St... [more]
UPI000C051ABC5.500e-1135.16uncharacterized protein LOC111330574 n=1 Tax=Stylo... [more]
A0A2B4RB71_STYPI7.060e-1135.16Dimer_Tnp_hAT domain-containing protein n=2 Tax=St... [more]
A0A2B4S074_STYPI7.450e-1135.16Waprin-Phi3 n=1 Tax=Stylophora pistillata TaxID=50... [more]
A0A2B4R5H2_STYPI7.590e-1135.16Uncharacterized protein K02A2.6 n=3 Tax=Stylophora... [more]
A0A2B4SBT4_STYPI7.820e-1031.50Dimer_Tnp_hAT domain-containing protein n=1 Tax=St... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig11850contigM-pyrifera_M_contig11850:6963..7358 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size396
Cds size378
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815704.6911275-UTR-M-pyrifera_M_contig11850:6962..69801622815704.6911275-UTR-M-pyrifera_M_contig11850:6962..6980Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig11850 6963..6980 +
1692277530.474219-UTR-M-pyrifera_M_contig11850:6962..69801692277530.474219-UTR-M-pyrifera_M_contig11850:6962..6980Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig11850 6963..6980 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815704.7032022-CDS-M-pyrifera_M_contig11850:6980..73581622815704.7032022-CDS-M-pyrifera_M_contig11850:6980..7358Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig11850 6981..7358 +
1692277530.4847493-CDS-M-pyrifera_M_contig11850:6980..73581692277530.4847493-CDS-M-pyrifera_M_contig11850:6980..7358Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig11850 6981..7358 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig11850.3823.1prot_M-pyrifera_M_contig11850.3823.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig11850 6981..7358 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig11850.3823.1

>prot_M-pyrifera_M_contig11850.3823.1 ID=prot_M-pyrifera_M_contig11850.3823.1|Name=mRNA_M-pyrifera_M_contig11850.3823.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=126bp
MYKAARVIYPRTISLYADAHAVELKWLLGFKFVTPELLLELKAELVVYFP
LVKNIPDLSISTRDIWLAHKQQLPKWFGLVRRIWLIQSSSAIMERAFSVM
NNIFGAQQTSLLNDLFELSVMLRHNR
back to top

mRNA from alignment at M-pyrifera_M_contig11850:6963..7358+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig11850.3823.1 ID=mRNA_M-pyrifera_M_contig11850.3823.1|Name=mRNA_M-pyrifera_M_contig11850.3823.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=396bp|location=Sequence derived from alignment at M-pyrifera_M_contig11850:6963..7358+ (Macrocystis pyrifera P11B4 male)
TTAAGGAAGCTCCTTCTGATGTACAAGGCTGCGCGTGTGATCTACCCTCG CACCATCTCGCTATACGCCGATGCGCATGCAGTGGAGTTGAAGTGGTTGC TTGGCTTCAAATTCGTGACCCCCGAGCTTCTGCTCGAGCTCAAGGCGGAA CTTGTCGTCTACTTCCCTCTCGTCAAGAATATTCCCGACCTCAGCATCTC TACCAGGGACATCTGGCTCGCCCACAAGCAGCAGCTCCCCAAGTGGTTCG GTCTGGTCCGTAGGATATGGCTTATCCAGTCGTCATCGGCAATAATGGAG CGCGCCTTCTCGGTAATGAACAACATCTTCGGCGCGCAGCAGACCTCGTT ACTGAACGATCTGTTCGAGCTGTCCGTCATGTTGCGCCACAACCGT
back to top

Coding sequence (CDS) from alignment at M-pyrifera_M_contig11850:6963..7358+

>mRNA_M-pyrifera_M_contig11850.3823.1 ID=mRNA_M-pyrifera_M_contig11850.3823.1|Name=mRNA_M-pyrifera_M_contig11850.3823.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=756bp|location=Sequence derived from alignment at M-pyrifera_M_contig11850:6963..7358+ (Macrocystis pyrifera P11B4 male)
ATGTACAAGGCTGCGCGTGTGATCTACCCTCGCACCATCTCGCTATACGC
CGATGCGCATGCAGTGGAGTTGAAGTGGTTGCTTGGCTTCAAATTCGTGA
CCCCCGAGCTTCTGCTCGAGCTCAAGGCGGAACTTGTCGTCTACTTCCCT
CTCGTCAAGAATATTCCCGACCTCAGCATCTCTACCAGGGACATCTGGCT
CGCCCACAAGCAGCAGCTCCCCAAGTGGTTCGGTCTGGTCCGTAGGATAT
GGCTTATCCAGTCGTCATCGGCAATAATGGAGCGCGCCTTCTCGGTAATG
AACAACATCTTCGGCGCGCAGCAGACCTCGTTACTGAACGATCTGTTCGA
GCTGTCCGTCATGTTGCGCCACAACCGTATGTACAAGGCTGCGCGTGTGA
TCTACCCTCGCACCATCTCGCTATACGCCGATGCGCATGCAGTGGAGTTG
AAGTGGTTGCTTGGCTTCAAATTCGTGACCCCCGAGCTTCTGCTCGAGCT
CAAGGCGGAACTTGTCGTCTACTTCCCTCTCGTCAAGAATATTCCCGACC
TCAGCATCTCTACCAGGGACATCTGGCTCGCCCACAAGCAGCAGCTCCCC
AAGTGGTTCGGTCTGGTCCGTAGGATATGGCTTATCCAGTCGTCATCGGC
AATAATGGAGCGCGCCTTCTCGGTAATGAACAACATCTTCGGCGCGCAGC
AGACCTCGTTACTGAACGATCTGTTCGAGCTGTCCGTCATGTTGCGCCAC
AACCGT
back to top