mRNA_M-pyrifera_M_contig118399.3810.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig118399.3810.1
Unique NamemRNA_M-pyrifera_M_contig118399.3810.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig118399.3810.1 vs. uniprot
Match: A0A5A8DNH1_CAFRO (PH domain-containing protein n=1 Tax=Cafeteria roenbergensis TaxID=33653 RepID=A0A5A8DNH1_CAFRO)

HSP 1 Score: 120 bits (301), Expect = 1.530e-30
Identity = 53/99 (53.54%), Postives = 68/99 (68.69%), Query Frame = 1
Query:    4 PMRVEGWMAKQGHFIPNWKNRWFVLEEDTIHYYGRQGDVVEKGRIHLTPGTEVIILPPERSHKPNCFSVNTPKKRFLLQAADEEERDEWVAAIKHNLKV 300
            P RVEGWMAK+GH I NW+NRWFVLE+  + YY R GD   KG + LT  T V   P    H+P  F+V TPKK FL QAAD++E DEW+ A++ +++V
Sbjct:  282 PTRVEGWMAKKGHLIRNWRNRWFVLEDSVMQYYARPGDKKSKGTVTLTADTRVEAKPDY--HRPCVFTVTTPKKSFLFQAADDDELDEWLHALEMHIRV 378          
BLAST of mRNA_M-pyrifera_M_contig118399.3810.1 vs. uniprot
Match: A0A7S0JJ14_9EUKA (Hypothetical protein (Fragment) n=1 Tax=Calcidiscus leptoporus TaxID=127549 RepID=A0A7S0JJ14_9EUKA)

HSP 1 Score: 73.6 bits (179), Expect = 2.360e-13
Identity = 42/102 (41.18%), Postives = 53/102 (51.96%), Query Frame = 1
Query:   16 EGWMAKQGHFIPNWKNRWFVLEEDTIHYYGRQ---GD---VVE-KGRIHLTPGTEVIILPPERSHKPNCFSVNT-PKKRFLLQAADEEERDEWVAAIKHNLK 297
             GW+ KQGH    WK RWFVLE   + YY  Q   GD   ++E KG I L+  T   +       +P  F ++   KK FL+ AADE  R EW+ AI  N K
Sbjct:   31 RGWLTKQGHIFKTWKKRWFVLEGPLLKYYKTQEEDGDSPTILELKGTITLSDCTVTPLTEQAADSRPFAFQLSPRSKKIFLICAADEASRKEWLDAIAKNAK 132          
BLAST of mRNA_M-pyrifera_M_contig118399.3810.1 vs. uniprot
Match: UPI001FAEFDC9 (pleckstrin-2 n=2 Tax=Hippoglossus TaxID=8266 RepID=UPI001FAEFDC9)

HSP 1 Score: 73.6 bits (179), Expect = 3.380e-13
Identity = 38/95 (40.00%), Postives = 55/95 (57.89%), Query Frame = 1
Query:   16 EGWMAKQGHFIPNWKNRWFVLEEDTIHYYGRQG---DVVEKGRIHLTPGTEVIILPP--ERSHKPNCFSVNTPKK-RFLLQAADEEERDEWVAAI 282
            EG++ K+GHF+PNWK RWFVL+ D + YY  +G   D  ++G+I L    + ++  P  E  ++P  F + T       L+A   EERDEW A I
Sbjct:   12 EGFLVKRGHFVPNWKARWFVLKPDKLLYYKYEGGRRDSCQRGKIPLK---DCVLTCPYLEYENRPLVFKLQTANGVGHFLEACSREERDEWAADI 103          
BLAST of mRNA_M-pyrifera_M_contig118399.3810.1 vs. uniprot
Match: UPI0014553152 (pleckstrin-2-like n=1 Tax=Asterias rubens TaxID=7604 RepID=UPI0014553152)

HSP 1 Score: 72.8 bits (177), Expect = 6.950e-13
Identity = 33/97 (34.02%), Postives = 55/97 (56.70%), Query Frame = 1
Query:   16 EGWMAKQGHFIPNWKNRWFVLEEDTIHYYGRQGDVVEKGRIHLTPGTEVIILPPERSHKPNCFSVNTPK-KRFLLQAADEEERDEWVAAIKHNLKVC 303
            EG++ K+GH   NW+ RWFVL  + + YY ++ D    G + L  G  V+    + + K + F ++       L+QA++++ERDEWV AI   ++ C
Sbjct:   11 EGFLVKKGHVRTNWRTRWFVLFNEAVAYYKKKDDDFAAGAV-LLQGCSVLSPCLQYTKKKSVFKLSARDGTELLMQASNDDERDEWVKAIGETIRTC 106          
BLAST of mRNA_M-pyrifera_M_contig118399.3810.1 vs. uniprot
Match: F6RSW4_ORNAN (DEF6 guanine nucleotide exchange factor n=2 Tax=Monotremata TaxID=9255 RepID=F6RSW4_ORNAN)

HSP 1 Score: 72.4 bits (176), Expect = 1.150e-12
Identity = 33/95 (34.74%), Postives = 55/95 (57.89%), Query Frame = 1
Query:   16 EGWMAKQGHFIPNWKNRWFVLEEDTIHYYGRQGDVVEKGRIHLTPGTEVIILPPERSHKPNCFSVNTPKKRFLLQAADEEERDEWVAAIKHNLKV 300
            +G++ K+G    +W  RWF+L+ +++ YYG +    +KG I L P   V +LP +R  K   F V T  + + + AAD  +R EW AAI+  +++
Sbjct:  217 QGYLWKRGQLRRSWAERWFLLQPNSLSYYGSEERREQKGSIALDPQCCVEVLP-DRDGKRCMFCVKTASRTYEMSAADTRQRQEWTAAIQTAIRL 310          
BLAST of mRNA_M-pyrifera_M_contig118399.3810.1 vs. uniprot
Match: A0A2B4T129_STYPI (Pleckstrin n=1 Tax=Stylophora pistillata TaxID=50429 RepID=A0A2B4T129_STYPI)

HSP 1 Score: 72.0 bits (175), Expect = 1.350e-12
Identity = 36/96 (37.50%), Postives = 57/96 (59.38%), Query Frame = 1
Query:   16 EGWMAKQGHFIPNWKNRWFVLEEDTIHYYGRQGDVV-EKGRIHLTPGTEVIILPPERSHKPNCFSVNTPKK-RFLLQAADEEERDEWVAAIKHNLK 297
            EG++ K+GH   NWK RWFVL E+ + Y+ ++  V+   G I L  G  ++    E + K   F + T +   +LLQAA+EEER++W  AI + ++
Sbjct:   11 EGFLVKKGHVRHNWKTRWFVLHEEMLMYFKKKNQVMYNAGEIPLR-GCFLVSPCTEYTKKEGVFRITTKENTEYLLQAANEEEREDWTTAIANAVR 105          
BLAST of mRNA_M-pyrifera_M_contig118399.3810.1 vs. uniprot
Match: UPI0009E5AAFD (pleckstrin-2-like n=1 Tax=Orbicella faveolata TaxID=48498 RepID=UPI0009E5AAFD)

HSP 1 Score: 70.5 bits (171), Expect = 2.910e-12
Identity = 34/96 (35.42%), Postives = 57/96 (59.38%), Query Frame = 1
Query:   16 EGWMAKQGHFIPNWKNRWFVLEEDTIHYYGRQGDVV-EKGRIHLTPGTEVIILPPERSHKPNCFSVNTPKK-RFLLQAADEEERDEWVAAIKHNLK 297
            EG++ K+GH   NWK RWF+L ++ + Y+ ++  ++   G I L  G  ++    E + K   F + T +   +LLQAA+EEER+EW  AI + ++
Sbjct:   11 EGFLVKKGHVRHNWKTRWFILYDEALVYFKKKNQIMYNAGEIPLR-GCFLVSPCTEYTKKEGVFRITTKENIEYLLQAANEEEREEWTTAIANAVR 105          
BLAST of mRNA_M-pyrifera_M_contig118399.3810.1 vs. uniprot
Match: UPI001C424150 (pleckstrin-2 n=1 Tax=Solea senegalensis TaxID=28829 RepID=UPI001C424150)

HSP 1 Score: 68.9 bits (167), Expect = 1.550e-11
Identity = 36/95 (37.89%), Postives = 53/95 (55.79%), Query Frame = 1
Query:   16 EGWMAKQGHFIPNWKNRWFVLEEDTIHYYGRQG---DVVEKGRIHLTPGTEVIILPP--ERSHKPNCFSVNTPKK-RFLLQAADEEERDEWVAAI 282
            EG++ K+GHF+ NWK RWFVL  D + YY  +G   D  ++G+I L    + ++  P  E  ++P    + T  +    L+A   EERDEW A I
Sbjct:   12 EGFLVKRGHFVHNWKARWFVLMPDKLQYYKYEGSKRDSCQRGKILLK---DCVLTCPYLEYENRPLVLKLRTTNRVDHFLEACSREERDEWAADI 103          
BLAST of mRNA_M-pyrifera_M_contig118399.3810.1 vs. uniprot
Match: UPI00142594EC (switch-associated protein 70-like isoform X1 n=2 Tax=Anneissia japonica TaxID=1529436 RepID=UPI00142594EC)

HSP 1 Score: 68.6 bits (166), Expect = 2.640e-11
Identity = 33/100 (33.00%), Postives = 56/100 (56.00%), Query Frame = 1
Query:    1 LPMRVEGWMAKQGHFIPNWKNRWFVLEEDTIHYYGRQGDVVEKGRIHLTPGTEVIILPPERSHKPNCFSV------NTPKKRFLLQAADEEERDEWVAAI 282
            + +  +G M K+GH I +WK+RWFVL ++T+ YY  + +   KG+I LTP  +V ++  +  +K N F +         K R+ +  +D   R EW+ A+
Sbjct:  210 MEVEKKGMMKKKGHMIASWKDRWFVLSQETLTYYTDRSEKEAKGQITLTPFWKVELIN-DGKYK-NMFVIYKEGKSTNEKSRYEMSVSDLRTRQEWITAL 307          
BLAST of mRNA_M-pyrifera_M_contig118399.3810.1 vs. uniprot
Match: A0A662YHZ4_9STRA (Uncharacterized protein n=1 Tax=Nothophytophthora sp. Chile5 TaxID=2483409 RepID=A0A662YHZ4_9STRA)

HSP 1 Score: 68.2 bits (165), Expect = 3.800e-11
Identity = 33/94 (35.11%), Postives = 53/94 (56.38%), Query Frame = 1
Query:   16 EGWMAK---QGHFIPNWKNRWFVLEEDTIHYYGRQGDVVEKGRIHLTPGTEVIILPPERSHKPNCFSVNTP--KKRFLLQAADEEERDEWVAAI 282
            EGW+ K   +G  +PNW+ R+F L    + YY     ++E+ R  LT  +EV+    ++ + P CF + +   +  F +QA +E E+ EWVAAI
Sbjct:    9 EGWLKKRSREGKLVPNWRRRYFRLTRSELLYYDTPQSMIERRRYELTLASEVLQTN-DQGYPPLCFVLKSAPDQPNFYMQAENETEKSEWVAAI 101          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig118399.3810.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A5A8DNH1_CAFRO1.530e-3053.54PH domain-containing protein n=1 Tax=Cafeteria roe... [more]
A0A7S0JJ14_9EUKA2.360e-1341.18Hypothetical protein (Fragment) n=1 Tax=Calcidiscu... [more]
UPI001FAEFDC93.380e-1340.00pleckstrin-2 n=2 Tax=Hippoglossus TaxID=8266 RepID... [more]
UPI00145531526.950e-1334.02pleckstrin-2-like n=1 Tax=Asterias rubens TaxID=76... [more]
F6RSW4_ORNAN1.150e-1234.74DEF6 guanine nucleotide exchange factor n=2 Tax=Mo... [more]
A0A2B4T129_STYPI1.350e-1237.50Pleckstrin n=1 Tax=Stylophora pistillata TaxID=504... [more]
UPI0009E5AAFD2.910e-1235.42pleckstrin-2-like n=1 Tax=Orbicella faveolata TaxI... [more]
UPI001C4241501.550e-1137.89pleckstrin-2 n=1 Tax=Solea senegalensis TaxID=2882... [more]
UPI00142594EC2.640e-1133.00switch-associated protein 70-like isoform X1 n=2 T... [more]
A0A662YHZ4_9STRA3.800e-1135.11Uncharacterized protein n=1 Tax=Nothophytophthora ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig118399contigM-pyrifera_M_contig118399:180..488 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeMetazoa
Seed ortholog score84.3
Seed ortholog evalue3.5e-14
Seed eggNOG ortholog10224.XP_006821220.1
Preferred namePLEK2
KEGG koko:K19993
Hectar predicted targeting categoryother localisation
GOsGO:0003674,GO:0005488,GO:0005543,GO:0005575,GO:0005622,GO:0005623,GO:0005856,GO:0005886,GO:0006996,GO:0007010,GO:0008150,GO:0008289,GO:0009987,GO:0016020,GO:0016043,GO:0030027,GO:0030029,GO:0030036,GO:0031252,GO:0031253,GO:0031256,GO:0031258,GO:0031344,GO:0031346,GO:0031532,GO:0032266,GO:0035091,GO:0042995,GO:0043167,GO:0043168,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0043325,GO:0044087,GO:0044089,GO:0044424,GO:0044425,GO:0044459,GO:0044463,GO:0044464,GO:0048518,GO:0048522,GO:0050789,GO:0050794,GO:0051128,GO:0051130,GO:0060491,GO:0065007,GO:0071840,GO:0071944,GO:0080025,GO:0098590,GO:0120025,GO:0120032,GO:0120034,GO:0120035,GO:0120038,GO:1901981,GO:1902936
EggNOG free text desc.phosphatidylinositol-3,4-bisphosphate binding
EggNOG OGs28RVX@1,2QYJ8@2759,39SH8@33154,3BE1V@33208,3D1S0@33213
COG Functional cat.T
Best tax levelBilateria
Best eggNOG OGNA|NA|NA
BRITEko00000,ko04131
Exons1
Model size309
Cds size303
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815703.6859741-CDS-M-pyrifera_M_contig118399:179..4821622815703.6859741-CDS-M-pyrifera_M_contig118399:179..482Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig118399 180..482 -
1692277529.9412816-CDS-M-pyrifera_M_contig118399:179..4821692277529.9412816-CDS-M-pyrifera_M_contig118399:179..482Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig118399 180..482 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815703.698049-UTR-M-pyrifera_M_contig118399:482..4881622815703.698049-UTR-M-pyrifera_M_contig118399:482..488Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig118399 483..488 -
1692277529.9558828-UTR-M-pyrifera_M_contig118399:482..4881692277529.9558828-UTR-M-pyrifera_M_contig118399:482..488Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig118399 483..488 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig118399.3810.1prot_M-pyrifera_M_contig118399.3810.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig118399 180..482 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig118399.3810.1

>prot_M-pyrifera_M_contig118399.3810.1 ID=prot_M-pyrifera_M_contig118399.3810.1|Name=mRNA_M-pyrifera_M_contig118399.3810.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=101bp
MRVEGWMAKQGHFIPNWKNRWFVLEEDTIHYYGRQGDVVEKGRIHLTPGT
EVIILPPERSHKPNCFSVNTPKKRFLLQAADEEERDEWVAAIKHNLKVCR
*
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mRNA from alignment at M-pyrifera_M_contig118399:180..488-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig118399.3810.1 ID=mRNA_M-pyrifera_M_contig118399.3810.1|Name=mRNA_M-pyrifera_M_contig118399.3810.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=309bp|location=Sequence derived from alignment at M-pyrifera_M_contig118399:180..488- (Macrocystis pyrifera P11B4 male)
CTCCCCATGCGCGTGGAAGGCTGGATGGCGAAACAGGGCCACTTTATCCC AAACTGGAAAAACCGGTGGTTTGTGCTCGAAGAAGACACCATCCACTACT ACGGCAGGCAAGGGGACGTCGTGGAGAAAGGACGCATCCACCTCACTCCA GGCACGGAAGTCATCATCCTCCCGCCAGAACGATCCCACAAACCAAACTG CTTCTCCGTCAACACCCCGAAGAAGAGGTTCCTCCTCCAAGCCGCGGACG AAGAGGAGAGGGACGAGTGGGTCGCGGCCATCAAACACAACCTCAAAGTC TGCAGGTGA
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig118399:180..488-

>mRNA_M-pyrifera_M_contig118399.3810.1 ID=mRNA_M-pyrifera_M_contig118399.3810.1|Name=mRNA_M-pyrifera_M_contig118399.3810.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=606bp|location=Sequence derived from alignment at M-pyrifera_M_contig118399:180..488- (Macrocystis pyrifera P11B4 male)
ATGCGCGTGGAAGGCTGGATGGCGAAACAGGGCCACTTTATCCCAAACTG
GAAAAACCGGTGGTTTGTGCTCGAAGAAGACACCATCCACTACTACGGCA
GGCAAGGGGACGTCGTGGAGAAAGGACGCATCCACCTCACTCCAGGCACG
GAAGTCATCATCCTCCCGCCAGAACGATCCCACAAACCAAACTGCTTCTC
CGTCAACACCCCGAAGAAGAGGTTCCTCCTCCAAGCCGCGGACGAAGAGG
AGAGGGACGAGTGGGTCGCGGCCATCAAACACAACCTCAAAGTCTGCAGG
TGAATGCGCGTGGAAGGCTGGATGGCGAAACAGGGCCACTTTATCCCAAA
CTGGAAAAACCGGTGGTTTGTGCTCGAAGAAGACACCATCCACTACTACG
GCAGGCAAGGGGACGTCGTGGAGAAAGGACGCATCCACCTCACTCCAGGC
ACGGAAGTCATCATCCTCCCGCCAGAACGATCCCACAAACCAAACTGCTT
CTCCGTCAACACCCCGAAGAAGAGGTTCCTCCTCCAAGCCGCGGACGAAG
AGGAGAGGGACGAGTGGGTCGCGGCCATCAAACACAACCTCAAAGTCTGC
AGGTGA
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