mRNA_M-pyrifera_M_contig118385.3807.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig118385.3807.1
Unique NamemRNA_M-pyrifera_M_contig118385.3807.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig118385.3807.1 vs. uniprot
Match: A0A6L7W1L8_9BACT (Alpha/beta hydrolase n=4 Tax=Gemmatimonadetes bacterium TaxID=2026742 RepID=A0A6L7W1L8_9BACT)

HSP 1 Score: 88.6 bits (218), Expect = 8.430e-20
Identity = 40/69 (57.97%), Postives = 50/69 (72.46%), Query Frame = 1
Query:    1 FHGTADETVRHTQAVGFEKAMVDSGNDCRLVSFEGAGHGFFNHGRGDGSAYEETTSAMVEFLEKNGFID 207
            FHGT D TV + QA  F KAM  +GN C L ++EG GHGFFNHGR DGSAYE+T + M +FL + G++D
Sbjct:  181 FHGTDDTTVPYEQAQRFTKAMHKAGNTCELCAYEGKGHGFFNHGRDDGSAYEQTVAQMDDFLVQLGYLD 249          
BLAST of mRNA_M-pyrifera_M_contig118385.3807.1 vs. uniprot
Match: A3ZWR4_9BACT (Probable lipase/esterase n=1 Tax=Blastopirellula marina DSM 3645 TaxID=314230 RepID=A3ZWR4_9BACT)

HSP 1 Score: 82.4 bits (202), Expect = 3.690e-17
Identity = 35/68 (51.47%), Postives = 47/68 (69.12%), Query Frame = 1
Query:    1 FHGTADETVRHTQAVGFEKAMVDSGNDCRLVSFEGAGHGFFNHGRGDGSAYEETTSAMVEFLEKNGFI 204
            FHG AD TV +     + + M + G  C+LV ++GAGHGFFNHGRGD  AYE+TT  M +FL ++GF+
Sbjct:  232 FHGKADTTVPYVTVEKYAEKMQELGGLCKLVGYDGAGHGFFNHGRGDKGAYEDTTKQMTQFLREHGFL 299          
BLAST of mRNA_M-pyrifera_M_contig118385.3807.1 vs. uniprot
Match: A0A518KXK7_9BACT (Lipase 2 n=1 Tax=Planctomycetes bacterium TBK1r TaxID=2527963 RepID=A0A518KXK7_9BACT)

HSP 1 Score: 83.2 bits (204), Expect = 5.810e-17
Identity = 37/69 (53.62%), Postives = 47/69 (68.12%), Query Frame = 1
Query:    1 FHGTADETVRHTQAVGFEKAMVDSGNDCRLVSFEGAGHGFFNHGRGDGSAYEETTSAMVEFLEKNGFID 207
            FHG ADETV +  A  F +AM  +GN C L+ FEG GHGFFNHGRGD S Y+ T   + +FL  +GF++
Sbjct:  238 FHGKADETVPYWTAEAFCQAMKKAGNACELIGFEGQGHGFFNHGRGDNSNYQSTIRELDQFLVSHGFLE 306          
BLAST of mRNA_M-pyrifera_M_contig118385.3807.1 vs. uniprot
Match: A0A7C6AZF5_9BACT (Alpha/beta hydrolase n=1 Tax=Planctomycetes bacterium TaxID=2026780 RepID=A0A7C6AZF5_9BACT)

HSP 1 Score: 82.0 bits (201), Expect = 6.320e-17
Identity = 39/68 (57.35%), Postives = 46/68 (67.65%), Query Frame = 1
Query:    1 FHGTADETVRHTQAVGFEKAMVDSGNDCRLVSFEGAGHGFFNHGRGDGSAYEETTSAMVEFLEKNGFI 204
            FHGTAD TV       F +AM  +GN CRLV FEGAGHGFFN GRGD +AY+ET     EFL + G++
Sbjct:  244 FHGTADTTVPFATVKLFAEAMTKAGNQCRLVPFEGAGHGFFNFGRGDKTAYKETLRLTDEFLTELGYL 311          
BLAST of mRNA_M-pyrifera_M_contig118385.3807.1 vs. uniprot
Match: A0A5C6AQB1_9BACT (Acetylxylan esterase n=1 Tax=Stieleria varia TaxID=2528005 RepID=A0A5C6AQB1_9BACT)

HSP 1 Score: 80.9 bits (198), Expect = 3.770e-16
Identity = 37/68 (54.41%), Postives = 45/68 (66.18%), Query Frame = 1
Query:    1 FHGTADETVRHTQAVGFEKAMVDSGNDCRLVSFEGAGHGFFNHGRGDGSAYEETTSAMVEFLEKNGFI 204
            FHG AD+TV +  A  F  AMV +GN C LV F+G GHGFFNHGRG+ S+YE T   +  FL   G+I
Sbjct:  239 FHGRADDTVPYWTAEAFRDAMVAAGNRCELVGFDGEGHGFFNHGRGNNSSYERTIRELDSFLVSLGYI 306          
BLAST of mRNA_M-pyrifera_M_contig118385.3807.1 vs. uniprot
Match: A0A5C5ZGQ1_9BACT (Carboxylesterase NlhH n=2 Tax=Rhodopirellula pilleata TaxID=2714738 RepID=A0A5C5ZGQ1_9BACT)

HSP 1 Score: 80.1 bits (196), Expect = 4.780e-16
Identity = 36/68 (52.94%), Postives = 44/68 (64.71%), Query Frame = 1
Query:    1 FHGTADETVRHTQAVGFEKAMVDSGNDCRLVSFEGAGHGFFNHGRGDGSAYEETTSAMVEFLEKNGFI 204
            FHG AD+TV +  A  F  AMV SGN C L+ F+G GHGFFNHGRG+   YE+T   +  FL   GF+
Sbjct:  288 FHGRADDTVPYWTAEAFRDAMVGSGNRCELIGFDGQGHGFFNHGRGNNENYEKTIRELDRFLVSIGFL 355          
BLAST of mRNA_M-pyrifera_M_contig118385.3807.1 vs. uniprot
Match: A0A5C5VM14_9BACT (Carboxylesterase NlhH n=1 Tax=Blastopirellula retiformator TaxID=2527970 RepID=A0A5C5VM14_9BACT)

HSP 1 Score: 79.3 bits (194), Expect = 4.920e-16
Identity = 36/68 (52.94%), Postives = 45/68 (66.18%), Query Frame = 1
Query:    1 FHGTADETVRHTQAVGFEKAMVDSGNDCRLVSFEGAGHGFFNHGRGDGSAYEETTSAMVEFLEKNGFI 204
            FHG AD TV +     FE+ M D G  C+LV ++ AGHGFFN GRGD SAY++TT  M +FL   GF+
Sbjct:  226 FHGKADTTVPYQTVELFEEKMADLGCLCKLVGYKEAGHGFFNQGRGDNSAYQDTTKQMTQFLRDQGFL 293          
BLAST of mRNA_M-pyrifera_M_contig118385.3807.1 vs. uniprot
Match: A0A518HVS8_9BACT (Lipase 2 n=3 Tax=Pirellulaceae TaxID=2691357 RepID=A0A518HVS8_9BACT)

HSP 1 Score: 79.0 bits (193), Expect = 1.790e-15
Identity = 36/69 (52.17%), Postives = 45/69 (65.22%), Query Frame = 1
Query:    1 FHGTADETVRHTQAVGFEKAMVDSGNDCRLVSFEGAGHGFFNHGRGDGSAYEETTSAMVEFLEKNGFID 207
            FHG AD TV +     +  AM  +G DC LV FEG GHGFFNHGRGD S+YE +   +  FL K+GF++
Sbjct:  238 FHGKADATVPYWTVQEYCGAMEKAGGDCELVGFEGQGHGFFNHGRGDNSSYETSIRQLDRFLVKHGFLE 306          
BLAST of mRNA_M-pyrifera_M_contig118385.3807.1 vs. uniprot
Match: A0A2D6W8J8_9BACT (Uncharacterized protein n=6 Tax=Verrucomicrobiales TaxID=48461 RepID=A0A2D6W8J8_9BACT)

HSP 1 Score: 77.4 bits (189), Expect = 2.230e-15
Identity = 35/68 (51.47%), Postives = 45/68 (66.18%), Query Frame = 1
Query:    1 FHGTADETVRHTQAVGFEKAMVDSGNDCRLVSFEGAGHGFFNHGRGDGSAYEETTSAMVEFLEKNGFI 204
            FHGTAD TV     + F+KA+ +    C L +++GA HGFFNHGRGDG AYE+T   M  FL + GF+
Sbjct:  208 FHGTADTTVPLKNVLEFQKAIQEQKIKCELHTYKGAKHGFFNHGRGDGKAYEDTVKKMTLFLVEQGFL 275          
BLAST of mRNA_M-pyrifera_M_contig118385.3807.1 vs. uniprot
Match: UPI001E599E2C (alpha/beta hydrolase n=1 Tax=unclassified Blastopirellula TaxID=2647022 RepID=UPI001E599E2C)

HSP 1 Score: 77.4 bits (189), Expect = 2.740e-15
Identity = 34/68 (50.00%), Postives = 45/68 (66.18%), Query Frame = 1
Query:    1 FHGTADETVRHTQAVGFEKAMVDSGNDCRLVSFEGAGHGFFNHGRGDGSAYEETTSAMVEFLEKNGFI 204
            FHG ADETV +     + + M + G  C+LV ++ AGHGFFN GRGD SAY++TT  M +FL   GF+
Sbjct:  232 FHGKADETVPYVTVERYAEKMRELGCLCKLVGYDDAGHGFFNQGRGDNSAYQDTTKQMTQFLRDQGFL 299          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig118385.3807.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6L7W1L8_9BACT8.430e-2057.97Alpha/beta hydrolase n=4 Tax=Gemmatimonadetes bact... [more]
A3ZWR4_9BACT3.690e-1751.47Probable lipase/esterase n=1 Tax=Blastopirellula m... [more]
A0A518KXK7_9BACT5.810e-1753.62Lipase 2 n=1 Tax=Planctomycetes bacterium TBK1r Ta... [more]
A0A7C6AZF5_9BACT6.320e-1757.35Alpha/beta hydrolase n=1 Tax=Planctomycetes bacter... [more]
A0A5C6AQB1_9BACT3.770e-1654.41Acetylxylan esterase n=1 Tax=Stieleria varia TaxID... [more]
A0A5C5ZGQ1_9BACT4.780e-1652.94Carboxylesterase NlhH n=2 Tax=Rhodopirellula pille... [more]
A0A5C5VM14_9BACT4.920e-1652.94Carboxylesterase NlhH n=1 Tax=Blastopirellula reti... [more]
A0A518HVS8_9BACT1.790e-1552.17Lipase 2 n=3 Tax=Pirellulaceae TaxID=2691357 RepID... [more]
A0A2D6W8J8_9BACT2.230e-1551.47Uncharacterized protein n=6 Tax=Verrucomicrobiales... [more]
UPI001E599E2C2.740e-1550.00alpha/beta hydrolase n=1 Tax=unclassified Blastopi... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig118385contigM-pyrifera_M_contig118385:331..549 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeBacteria
Seed ortholog score81.3
Seed ortholog evalue2.1e-13
Seed eggNOG ortholog314230.DSM3645_13780
Hectar predicted targeting categoryother localisation
EggNOG free text desc.Carboxylesterase family
EggNOG OGs2IYY7@203682,COG0657@1,COG0657@2
COG Functional cat.I
Best tax levelPlanctomycetes
Best eggNOG OGNA|NA|NA
Exons1
Model size219
Cds size219
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815703.583706-CDS-M-pyrifera_M_contig118385:330..5491622815703.583706-CDS-M-pyrifera_M_contig118385:330..549Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig118385 331..549 -
1692277529.892099-CDS-M-pyrifera_M_contig118385:330..5491692277529.892099-CDS-M-pyrifera_M_contig118385:330..549Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig118385 331..549 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig118385.3807.1prot_M-pyrifera_M_contig118385.3807.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig118385 331..549 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig118385.3807.1

>prot_M-pyrifera_M_contig118385.3807.1 ID=prot_M-pyrifera_M_contig118385.3807.1|Name=mRNA_M-pyrifera_M_contig118385.3807.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=73bp
FHGTADETVRHTQAVGFEKAMVDSGNDCRLVSFEGAGHGFFNHGRGDGSA
YEETTSAMVEFLEKNGFIDNGS*
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mRNA from alignment at M-pyrifera_M_contig118385:331..549-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig118385.3807.1 ID=mRNA_M-pyrifera_M_contig118385.3807.1|Name=mRNA_M-pyrifera_M_contig118385.3807.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=219bp|location=Sequence derived from alignment at M-pyrifera_M_contig118385:331..549- (Macrocystis pyrifera P11B4 male)
TTCCACGGCACCGCCGACGAGACGGTGCGGCACACGCAGGCCGTGGGTTT CGAGAAGGCGATGGTCGACTCTGGGAACGATTGTCGATTAGTGAGTTTTG AGGGCGCTGGGCACGGCTTTTTCAATCACGGGCGAGGAGACGGATCGGCT TACGAGGAAACCACCTCCGCGATGGTAGAATTCTTGGAAAAGAACGGCTT TATCGATAACGGGTCGTGA
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig118385:331..549-

>mRNA_M-pyrifera_M_contig118385.3807.1 ID=mRNA_M-pyrifera_M_contig118385.3807.1|Name=mRNA_M-pyrifera_M_contig118385.3807.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=438bp|location=Sequence derived from alignment at M-pyrifera_M_contig118385:331..549- (Macrocystis pyrifera P11B4 male)
TTCCACGGCACCGCCGACGAGACGGTGCGGCACACGCAGGCCGTGGGTTT
CGAGAAGGCGATGGTCGACTCTGGGAACGATTGTCGATTAGTGAGTTTTG
AGGGCGCTGGGCACGGCTTTTTCAATCACGGGCGAGGAGACGGATCGGCT
TACGAGGAAACCACCTCCGCGATGGTAGAATTCTTGGAAAAGAACGGCTT
TATCGATAACGGGTCGTGATTCCACGGCACCGCCGACGAGACGGTGCGGC
ACACGCAGGCCGTGGGTTTCGAGAAGGCGATGGTCGACTCTGGGAACGAT
TGTCGATTAGTGAGTTTTGAGGGCGCTGGGCACGGCTTTTTCAATCACGG
GCGAGGAGACGGATCGGCTTACGAGGAAACCACCTCCGCGATGGTAGAAT
TCTTGGAAAAGAACGGCTTTATCGATAACGGGTCGTGA
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