mRNA_M-pyrifera_M_contig118368.3801.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig118368.3801.1
Unique NamemRNA_M-pyrifera_M_contig118368.3801.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig118368.3801.1 vs. uniprot
Match: A0A7S2U502_9EUKA (Hypothetical protein n=1 Tax=Lotharella oceanica TaxID=641309 RepID=A0A7S2U502_9EUKA)

HSP 1 Score: 206 bits (523), Expect = 5.640e-61
Identity = 96/185 (51.89%), Postives = 131/185 (70.81%), Query Frame = 1
Query:    1 SPCSGFVTIDDDGKVCAGFRQCSSTHGIG--PDAWNVPLELRCATNENLTQWSAPDYIFDVFFNRALPYDPVRPWFD-NGMWHALIAMDGCNASSV-PCDAGGSEILWTSPKLHGPGAKWTRVGPMFTSNVTVLSGYQPGAWLDREFVTPEFFGSMPGQDPLQGATRVFTNNVAGPGCCSGTTAF 543
            +PCSGFVTID+DG+ CAGFRQC+ST G+   P  W+VP+ELRCA ++++T+W   + +F+V F RALPYDP RPW D +G W+ L+++D CN +   PC AGG   ++ S KLHG GA W ++G MF  + TVL G  PG+ +  EFVT ++ G +PG DP  G TR+F NNV G  CC+GTT++
Sbjct:   37 TPCSGFVTIDEDGRPCAGFRQCTSTKGVNGQPHRWDVPMELRCAYDDDMTEWGDSEMLFNVSFFRALPYDPPRPWIDTDGKWYMLVSLDACNDTHEHPCPAGGQVDIYRSDKLHGDGANWEKIGYMFREHRTVLGG-NPGSGV--EFVTSDYIGGLPG-DPNNGLTRIFLNNVDGLKCCAGTTSY 217          
BLAST of mRNA_M-pyrifera_M_contig118368.3801.1 vs. uniprot
Match: A9URW5_MONBE (Predicted protein n=1 Tax=Monosiga brevicollis TaxID=81824 RepID=A9URW5_MONBE)

HSP 1 Score: 192 bits (488), Expect = 1.400e-54
Identity = 105/191 (54.97%), Postives = 123/191 (64.40%), Query Frame = 1
Query:    1 SPCSGFVTIDDDGKVCAGFRQCSSTHGI-GPDAWNVPLELRCATNENLTQWSAPDYIFDVFFNRALPYDPVRPWFD-NGMWHALIAMDGCNASS--VPCDAGGSEILWTSPKLHG---PGAK--WTRVGPMFTSNVTVLSGYQPGAWLDREFVTPEFFGSMPGQDPLQGATRVFTNNVAGPGCCSGTTAFF 546
            SPCSGF   DDDG +  GFRQCSST G+ G   W+VPLELR ATN +L  + A  Y+++V F RALPYDPVRPW D +GMW++ IA DGCN +S  +PC AGG   LW SP L G   PGA   W  VG MFTSN TVLS   P     +E VT ++ G +PG DP QG TR+  NNV G     GTT FF
Sbjct:  210 SPCSGFAVADDDGSLYVGFRQCSSTTGVQGGHPWDVPLELRRATNSSLLSFGANLYLYNVSFYRALPYDPVRPWKDTDGMWYSTIATDGCNGTSRALPCAAGGQLDLWRSPTLLGHAQPGANAGWQHVGAMFTSNRTVLSALHPDLIEPQELVTVDYIGGLPG-DPAQGGTRLLLNNVNG-NAGVGTTMFF 398          
BLAST of mRNA_M-pyrifera_M_contig118368.3801.1 vs. uniprot
Match: A0A7S3ZCF3_9EUKA (Hypothetical protein n=1 Tax=Lotharella globosa TaxID=91324 RepID=A0A7S3ZCF3_9EUKA)

HSP 1 Score: 159 bits (401), Expect = 3.740e-42
Identity = 85/198 (42.93%), Postives = 117/198 (59.09%), Query Frame = 1
Query:    4 PCSGFVTIDDDGKVCAGFRQCSSTHGI-GPD--------AWNVPLELRCATNENLTQWSAPDYIFDVFFNRALPYDPVRPWFD-NGMWHALIAMDGCNASS------VPCDAGGSEILWTSPK-LHGPGAKWTRVGPMFTSNVTVLSGYQPGAWLDREFVTPEFFGSMPGQDPLQGATRVFTNNVAGPGCCSGTTAFF 546
            PCSGFV +DD+G  CAGFRQC S   + G D         WNVP+E+RCA+++ LT W  P+Y+++V + R LPYDP RPW D +G W+ L+++DGCN ++       PC  GG+ +L+ S   L  P + W +VG +F    TV    QPG    +E VT ++ G + G DP  G TRVF NN+      SG T +F
Sbjct:  181 PCSGFVVLDDNGTACAGFRQCGSDKSVEGYDKDENGNTIGWNVPVEVRCASDDYLTDWGDPEYLYNVSYFRKLPYDPSRPWVDEDGSWYMLLSIDGCNDTTRVFTPGAPCLEGGAAMLYKSDTGLRPPESNWEQVGIVFREKNTV----QPGVPQVQEMVTIDYIGGLKG-DPYGGKTRVFFNNIFSQ---SGNTEYF 370          
BLAST of mRNA_M-pyrifera_M_contig118368.3801.1 vs. uniprot
Match: A0A7S4DEU6_9EUKA (Hypothetical protein (Fragment) n=1 Tax=Lotharella globosa TaxID=91324 RepID=A0A7S4DEU6_9EUKA)

HSP 1 Score: 122 bits (305), Expect = 1.430e-32
Identity = 49/104 (47.12%), Postives = 67/104 (64.42%), Query Frame = 1
Query:   85 GPDAWNVPLELRCATNENLTQWSAPDYIFDVFFNRALPYDPVRPWFDNGMWHALIAMDGCNA--SSVPCDAGGSEILWTSPKLHGPGAKWTRVGPMFTSNVTVL 390
            G  AW+ P+E+RCA + NLT W  P+ +F V +NR LPYDP RPW +NG W+ L+  DGCN   S +PCD G S  +W+SP L GP   WT  G M+ +  +++
Sbjct:    6 GTGAWDAPMEIRCARDANLTDWGEPEELFFVHYNRWLPYDPARPWKENGTWYMLVCTDGCNGTESELPCDQGYSIDMWSSPWLRGPKKNWTFAGTMYNTKASIV 109          
BLAST of mRNA_M-pyrifera_M_contig118368.3801.1 vs. uniprot
Match: A0A7S2GT17_9EUKA (Hypothetical protein (Fragment) n=1 Tax=Haptolina brevifila TaxID=156173 RepID=A0A7S2GT17_9EUKA)

HSP 1 Score: 113 bits (283), Expect = 2.170e-29
Identity = 52/102 (50.98%), Postives = 71/102 (69.61%), Query Frame = 1
Query:   37 GKVCAGFRQCSSTHGI---GPDAWNVPLELRCATNENLTQWS--APDYIFDVFFNRALPYDPVRPWFD-NGMWHALIAMDGCNASSV---PCDAGGSEILWT 315
            G VCAGFRQC S  G+   G   W+VPLELRCA +++L  W+  AP+Y+F+V F R +PYDP RPW + NG W+ L+++DGCNA+S+   PC  GG   +W+
Sbjct:    6 GDVCAGFRQCGSNKGVNKTGAKPWDVPLELRCALDDDLDTWNDAAPEYLFNVSFWRGVPYDPARPWREANGKWYQLLSLDGCNATSLNKLPCYKGGMLGMWS 107          
BLAST of mRNA_M-pyrifera_M_contig118368.3801.1 vs. uniprot
Match: A0A7S2TVV8_9EUKA (Hypothetical protein (Fragment) n=1 Tax=Lotharella oceanica TaxID=641309 RepID=A0A7S2TVV8_9EUKA)

HSP 1 Score: 108 bits (269), Expect = 3.550e-27
Identity = 49/105 (46.67%), Postives = 70/105 (66.67%), Query Frame = 1
Query:   70 STHGIGPDA----WNVPLELRCATNENLTQWSAPDYIFDVFFNRALPYDPVRPWFD-NGMWHALIAMDGCNASS--VPCDAGGSEILWTSPK-LHGPGAKWTRVG 360
            S  G+  DA    WNVP+ELRCA++E LT+W  P+++F+V + R+ PYDP RPW D +G W+ L+ +D CNA++  +PC  GG  +L+ S   L GP A W +VG
Sbjct:    5 SVQGLPEDASNQRWNVPMELRCASDEYLTEWGDPEFLFNVTYYRSTPYDPTRPWVDTDGKWYMLVGIDACNATTRKLPCREGGGVMLYVSDHGLRGPQANWRQVG 109          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig118368.3801.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 6
Match NameE-valueIdentityDescription
A0A7S2U502_9EUKA5.640e-6151.89Hypothetical protein n=1 Tax=Lotharella oceanica T... [more]
A9URW5_MONBE1.400e-5454.97Predicted protein n=1 Tax=Monosiga brevicollis Tax... [more]
A0A7S3ZCF3_9EUKA3.740e-4242.93Hypothetical protein n=1 Tax=Lotharella globosa Ta... [more]
A0A7S4DEU6_9EUKA1.430e-3247.12Hypothetical protein (Fragment) n=1 Tax=Lotharella... [more]
A0A7S2GT17_9EUKA2.170e-2950.98Hypothetical protein (Fragment) n=1 Tax=Haptolina ... [more]
A0A7S2TVV8_9EUKA3.550e-2746.67Hypothetical protein (Fragment) n=1 Tax=Lotharella... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig118368contigM-pyrifera_M_contig118368:3..548 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score192.6
Seed ortholog evalue1.6e-46
Seed eggNOG ortholog81824.XP_001742962.1
Hectar predicted targeting categoryother localisation
EggNOG OGs2EK2C@1,2SQ2I@2759
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons1
Model size546
Cds size546
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815703.2212632-CDS-M-pyrifera_M_contig118368:2..5481622815703.2212632-CDS-M-pyrifera_M_contig118368:2..548Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig118368 3..548 -
1692277529.6884534-CDS-M-pyrifera_M_contig118368:2..5481692277529.6884534-CDS-M-pyrifera_M_contig118368:2..548Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig118368 3..548 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig118368.3801.1prot_M-pyrifera_M_contig118368.3801.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig118368 3..548 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig118368.3801.1

>prot_M-pyrifera_M_contig118368.3801.1 ID=prot_M-pyrifera_M_contig118368.3801.1|Name=mRNA_M-pyrifera_M_contig118368.3801.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=182bp
SPCSGFVTIDDDGKVCAGFRQCSSTHGIGPDAWNVPLELRCATNENLTQW
SAPDYIFDVFFNRALPYDPVRPWFDNGMWHALIAMDGCNASSVPCDAGGS
EILWTSPKLHGPGAKWTRVGPMFTSNVTVLSGYQPGAWLDREFVTPEFFG
SMPGQDPLQGATRVFTNNVAGPGCCSGTTAFF
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mRNA from alignment at M-pyrifera_M_contig118368:3..548-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig118368.3801.1 ID=mRNA_M-pyrifera_M_contig118368.3801.1|Name=mRNA_M-pyrifera_M_contig118368.3801.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=546bp|location=Sequence derived from alignment at M-pyrifera_M_contig118368:3..548- (Macrocystis pyrifera P11B4 male)
TCTCCTTGCAGTGGCTTCGTGACCATTGACGATGACGGAAAAGTGTGTGC TGGATTCCGGCAATGCAGCTCCACGCATGGCATCGGCCCTGATGCTTGGA ATGTTCCGCTTGAGCTTCGGTGTGCCACCAACGAAAATCTGACGCAGTGG TCAGCGCCAGACTACATCTTCGATGTCTTCTTCAATCGCGCACTTCCCTA TGATCCGGTGCGACCTTGGTTTGACAATGGGATGTGGCATGCCCTGATTG CAATGGATGGTTGCAACGCATCGTCAGTCCCTTGCGATGCTGGTGGGTCT GAGATTTTGTGGACCAGTCCAAAGCTGCATGGACCAGGAGCAAAGTGGAC GAGAGTTGGGCCAATGTTCACATCGAATGTGACAGTTCTCAGCGGGTATC AACCAGGTGCTTGGTTGGACCGTGAGTTTGTGACTCCAGAATTCTTTGGC AGCATGCCTGGGCAGGATCCATTGCAAGGTGCAACCCGTGTGTTTACGAA CAATGTCGCTGGCCCTGGGTGCTGCTCTGGAACTACTGCATTCTTC
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig118368:3..548-

>mRNA_M-pyrifera_M_contig118368.3801.1 ID=mRNA_M-pyrifera_M_contig118368.3801.1|Name=mRNA_M-pyrifera_M_contig118368.3801.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=1092bp|location=Sequence derived from alignment at M-pyrifera_M_contig118368:3..548- (Macrocystis pyrifera P11B4 male)
TCTCCTTGCAGTGGCTTCGTGACCATTGACGATGACGGAAAAGTGTGTGC
TGGATTCCGGCAATGCAGCTCCACGCATGGCATCGGCCCTGATGCTTGGA
ATGTTCCGCTTGAGCTTCGGTGTGCCACCAACGAAAATCTGACGCAGTGG
TCAGCGCCAGACTACATCTTCGATGTCTTCTTCAATCGCGCACTTCCCTA
TGATCCGGTGCGACCTTGGTTTGACAATGGGATGTGGCATGCCCTGATTG
CAATGGATGGTTGCAACGCATCGTCAGTCCCTTGCGATGCTGGTGGGTCT
GAGATTTTGTGGACCAGTCCAAAGCTGCATGGACCAGGAGCAAAGTGGAC
GAGAGTTGGGCCAATGTTCACATCGAATGTGACAGTTCTCAGCGGGTATC
AACCAGGTGCTTGGTTGGACCGTGAGTTTGTGACTCCAGAATTCTTTGGC
AGCATGCCTGGGCAGGATCCATTGCAAGGTGCAACCCGTGTGTTTACGAA
CAATGTCGCTGGCCCTGGGTGCTGCTCTGGAACTACTGCATTCTTCTCTC
CTTGCAGTGGCTTCGTGACCATTGACGATGACGGAAAAGTGTGTGCTGGA
TTCCGGCAATGCAGCTCCACGCATGGCATCGGCCCTGATGCTTGGAATGT
TCCGCTTGAGCTTCGGTGTGCCACCAACGAAAATCTGACGCAGTGGTCAG
CGCCAGACTACATCTTCGATGTCTTCTTCAATCGCGCACTTCCCTATGAT
CCGGTGCGACCTTGGTTTGACAATGGGATGTGGCATGCCCTGATTGCAAT
GGATGGTTGCAACGCATCGTCAGTCCCTTGCGATGCTGGTGGGTCTGAGA
TTTTGTGGACCAGTCCAAAGCTGCATGGACCAGGAGCAAAGTGGACGAGA
GTTGGGCCAATGTTCACATCGAATGTGACAGTTCTCAGCGGGTATCAACC
AGGTGCTTGGTTGGACCGTGAGTTTGTGACTCCAGAATTCTTTGGCAGCA
TGCCTGGGCAGGATCCATTGCAAGGTGCAACCCGTGTGTTTACGAACAAT
GTCGCTGGCCCTGGGTGCTGCTCTGGAACTACTGCATTCTTC
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