mRNA_M-pyrifera_M_contig118358.3797.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig118358.3797.1
Unique NamemRNA_M-pyrifera_M_contig118358.3797.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig118358.3797.1 vs. uniprot
Match: D1J794_ECTSI (ATP synthase subunit b, chloroplastic n=8 Tax=Ectocarpales TaxID=2877 RepID=D1J794_ECTSI)

HSP 1 Score: 252 bits (644), Expect = 2.910e-84
Identity = 136/140 (97.14%), Postives = 139/140 (99.29%), Query Frame = 1
Query:    1 MFDNYNSILIIGTEKTGGLFDFDGTLPVIALQFIIFMFLLNFILYTPLLDTIDERNIYISKSLSEATRILTKSNELNLKYEKKTSKARKAVALDLLTYQQLYKDILEEKMKSSEDFINKFLMETTKNFEENKESILKSFD 420
            MFDNYNSILIIGTEKTGGLFDFDGTLPVIALQFIIFMFLLNFILYTPLLDTIDERNIYISKSLSEATRILTKSNELNLKYEKKTSKARKAVALDLLTYQQLYK+ILEEKMKSSEDFI+KFL ETTKNFEENKE+ILKSFD
Sbjct:    1 MFDNYNSILIIGTEKTGGLFDFDGTLPVIALQFIIFMFLLNFILYTPLLDTIDERNIYISKSLSEATRILTKSNELNLKYEKKTSKARKAVALDLLTYQQLYKNILEEKMKSSEDFIDKFLTETTKNFEENKENILKSFD 140          
BLAST of mRNA_M-pyrifera_M_contig118358.3797.1 vs. uniprot
Match: A0A1I9LVV6_9PHAE (ATP synthase subunit b, chloroplastic n=1 Tax=Pleurocladia lacustris TaxID=246121 RepID=A0A1I9LVV6_9PHAE)

HSP 1 Score: 232 bits (591), Expect = 3.480e-76
Identity = 124/140 (88.57%), Postives = 133/140 (95.00%), Query Frame = 1
Query:    1 MFDNYNSILIIGTEKTGGLFDFDGTLPVIALQFIIFMFLLNFILYTPLLDTIDERNIYISKSLSEATRILTKSNELNLKYEKKTSKARKAVALDLLTYQQLYKDILEEKMKSSEDFINKFLMETTKNFEENKESILKSFD 420
            MFDNYN ILII TEKTGGLFDFDGTLPVIA+QFIIFMF+LNFILYTPLLDTIDERNIYISKSLSEAT ILTK+N+LN+KYEKKTSKARKAVALDLL YQ+LYKDILEEKMKSSE  I+KFL+ETTKNFEENK +ILKSFD
Sbjct:    1 MFDNYNYILIISTEKTGGLFDFDGTLPVIAIQFIIFMFILNFILYTPLLDTIDERNIYISKSLSEATNILTKANKLNIKYEKKTSKARKAVALDLLIYQKLYKDILEEKMKSSESVIDKFLIETTKNFEENKGNILKSFD 140          
BLAST of mRNA_M-pyrifera_M_contig118358.3797.1 vs. uniprot
Match: A0A0S0GJT6_COSCS (ATP synthase CF0 B' chain subunit II n=27 Tax=Laminariales TaxID=2886 RepID=A0A0S0GJT6_COSCS)

HSP 1 Score: 223 bits (568), Expect = 1.070e-72
Identity = 117/140 (83.57%), Postives = 130/140 (92.86%), Query Frame = 1
Query:    1 MFDNYNSILIIGTEKTGGLFDFDGTLPVIALQFIIFMFLLNFILYTPLLDTIDERNIYISKSLSEATRILTKSNELNLKYEKKTSKARKAVALDLLTYQQLYKDILEEKMKSSEDFINKFLMETTKNFEENKESILKSFD 420
            MF NYNSILIIGTEKTGGLFDFDGTLP+IALQF+IFMF+LNFILYTPLLDTIDERN+YI KSL EAT +LTKSN+LN+KYE KTSKARKA  LDLLTYQ+LYKDILEEKMKSS+ FI+KFL+ETT+NFE NK+SIL SFD
Sbjct:    1 MFYNYNSILIIGTEKTGGLFDFDGTLPIIALQFVIFMFILNFILYTPLLDTIDERNLYIKKSLDEATSVLTKSNQLNVKYEAKTSKARKAAKLDLLTYQKLYKDILEEKMKSSQLFIDKFLIETTENFENNKDSILTSFD 140          
BLAST of mRNA_M-pyrifera_M_contig118358.3797.1 vs. uniprot
Match: A0A8F0FAP4_9PHAE (CF0 subunit II n=1 Tax=Desmarestia aculeata TaxID=62298 RepID=A0A8F0FAP4_9PHAE)

HSP 1 Score: 214 bits (546), Expect = 2.410e-69
Identity = 112/140 (80.00%), Postives = 126/140 (90.00%), Query Frame = 1
Query:    1 MFDNYNSILIIGTEKTGGLFDFDGTLPVIALQFIIFMFLLNFILYTPLLDTIDERNIYISKSLSEATRILTKSNELNLKYEKKTSKARKAVALDLLTYQQLYKDILEEKMKSSEDFINKFLMETTKNFEENKESILKSFD 420
            MF NYNSILIIGTEKTGGLFDFDGTLPVIA+QF++FMF+LNFILYTPLLDTIDERNIYI  SL EAT +L KSN+LN KYEKK SKARKA  LDL+TYQ+LYKDIL+EKMKSS+ FI+ FL+ETTKNFE NK++IL SFD
Sbjct:    1 MFYNYNSILIIGTEKTGGLFDFDGTLPVIAIQFVLFMFILNFILYTPLLDTIDERNIYIKTSLEEATNVLAKSNQLNTKYEKKASKARKAAKLDLITYQKLYKDILDEKMKSSQIFIDDFLVETTKNFENNKDNILVSFD 140          
BLAST of mRNA_M-pyrifera_M_contig118358.3797.1 vs. uniprot
Match: A0A8F0F9X4_9PHAE (CF0 subunit II n=1 Tax=Chorda asiatica TaxID=1281577 RepID=A0A8F0F9X4_9PHAE)

HSP 1 Score: 212 bits (540), Expect = 1.980e-68
Identity = 110/140 (78.57%), Postives = 125/140 (89.29%), Query Frame = 1
Query:    1 MFDNYNSILIIGTEKTGGLFDFDGTLPVIALQFIIFMFLLNFILYTPLLDTIDERNIYISKSLSEATRILTKSNELNLKYEKKTSKARKAVALDLLTYQQLYKDILEEKMKSSEDFINKFLMETTKNFEENKESILKSFD 420
            MF NYNSILIIGTEKTGGLFDFDGTLPVI  QF++FMF+LNF+LYTPLLDTIDERN YI KSL +AT +L KSNELN KYEKKTSKARKA  +D+L YQ+LYKDILEEKMKSS+ FI+KFL+ETT+NFE NK++IL SFD
Sbjct:    1 MFHNYNSILIIGTEKTGGLFDFDGTLPVIVFQFVLFMFILNFVLYTPLLDTIDERNSYIKKSLDKATSVLIKSNELNKKYEKKTSKARKAAKMDILIYQKLYKDILEEKMKSSQIFIDKFLVETTENFENNKDNILTSFD 140          
BLAST of mRNA_M-pyrifera_M_contig118358.3797.1 vs. uniprot
Match: D1GJH9_FUCVE (ATP synthase CF0 B' chain subunit II n=3 Tax=Fucaceae TaxID=3010 RepID=D1GJH9_FUCVE)

HSP 1 Score: 199 bits (506), Expect = 2.970e-63
Identity = 107/140 (76.43%), Postives = 118/140 (84.29%), Query Frame = 1
Query:    1 MFDNYNSILIIGTEKTGGLFDFDGTLPVIALQFIIFMFLLNFILYTPLLDTIDERNIYISKSLSEATRILTKSNELNLKYEKKTSKARKAVALDLLTYQQLYKDILEEKMKSSEDFINKFLMETTKNFEENKESILKSFD 420
            MF +YNSI I+ TEKTGGLFDFDGTLPVI LQFI FMF+LNFILY PLLDTIDERNIYI KSL EAT +LT +N+LN+KYE K SKARKA  LDLLTYQ LYKDILEEKMKSS+ F ++FL ETT NFE NK+ IL SFD
Sbjct:    1 MFYHYNSIFILVTEKTGGLFDFDGTLPVIGLQFIFFMFILNFILYNPLLDTIDERNIYIKKSLDEATNVLTNANQLNVKYENKASKARKAAKLDLLTYQNLYKDILEEKMKSSQIFTDEFLNETTANFEINKDEILGSFD 140          
BLAST of mRNA_M-pyrifera_M_contig118358.3797.1 vs. uniprot
Match: A0A1L2F1S8_9PHAE (AtpG n=13 Tax=Sargassaceae TaxID=3014 RepID=A0A1L2F1S8_9PHAE)

HSP 1 Score: 191 bits (484), Expect = 6.640e-60
Identity = 104/140 (74.29%), Postives = 117/140 (83.57%), Query Frame = 1
Query:    1 MFDNYNSILIIGTEKTGGLFDFDGTLPVIALQFIIFMFLLNFILYTPLLDTIDERNIYISKSLSEATRILTKSNELNLKYEKKTSKARKAVALDLLTYQQLYKDILEEKMKSSEDFINKFLMETTKNFEENKESILKSFD 420
            MF NY+SILII TEKTGGLFDFDGTLPVI+LQFIIFMF+LN ILY PLLDTID RN YI KSL EA +ILT +N+LN K+E+K SKARKA  LDL+ YQ LYKDILEEKMKSS+ FI+ FL ETT+NFE NK+ IL  FD
Sbjct:    1 MFYNYSSILIIVTEKTGGLFDFDGTLPVISLQFIIFMFILNSILYNPLLDTIDARNTYIKKSLDEAAKILTNANQLNEKFEEKASKARKAAKLDLVIYQNLYKDILEEKMKSSQIFIDDFLTETTENFESNKDEILIGFD 140          
BLAST of mRNA_M-pyrifera_M_contig118358.3797.1 vs. uniprot
Match: A0A8F0F723_9PHAE (CF0 subunit II n=1 Tax=Protohalopteris sp. TaxID=2843287 RepID=A0A8F0F723_9PHAE)

HSP 1 Score: 174 bits (442), Expect = 1.630e-53
Identity = 94/137 (68.61%), Postives = 113/137 (82.48%), Query Frame = 1
Query:   10 NYNSILIIGTEKTGGLFDFDGTLPVIALQFIIFMFLLNFILYTPLLDTIDERNIYISKSLSEATRILTKSNELNLKYEKKTSKARKAVALDLLTYQQLYKDILEEKMKSSEDFINKFLMETTKNFEENKESILKSFD 420
            N+NSIL+IGTEK GGLFDFDGTLP+IALQF+I MFLLNFILYTPLLD ID RNIY+ + L  A+ +L  S  LN +YEKKTS+ARKA  LDL+ YQ+L K+ILEEK+K+S+  I+KFL E T NFE+NKESIL SF+
Sbjct:    4 NFNSILLIGTEKPGGLFDFDGTLPIIALQFVILMFLLNFILYTPLLDYIDGRNIYVDECLKAASFLLKNSKALNAEYEKKTSQARKAAKLDLVIYQKLSKEILEEKVKTSQASIDKFLNEMTNNFEQNKESILTSFE 140          
BLAST of mRNA_M-pyrifera_M_contig118358.3797.1 vs. uniprot
Match: A0A8E5XRC8_9PHAE (ATP synthase CF0 beta' subunit n=1 Tax=Ishige okamurae TaxID=233772 RepID=A0A8E5XRC8_9PHAE)

HSP 1 Score: 164 bits (416), Expect = 2.260e-49
Identity = 83/136 (61.03%), Postives = 112/136 (82.35%), Query Frame = 1
Query:   13 YNSILIIGTEKTGGLFDFDGTLPVIALQFIIFMFLLNFILYTPLLDTIDERNIYISKSLSEATRILTKSNELNLKYEKKTSKARKAVALDLLTYQQLYKDILEEKMKSSEDFINKFLMETTKNFEENKESILKSFD 420
            Y+ +L++ TEKTGGLFDFDGTLPVI LQF+  MF+LN +LY PLL+TID RN YI +SL +A+  LT++N+LNLKYE K ++ARKA  +D++TYQ+LYKDIL+ +M+SS++ I+ F+ ETTKNF++NKE IL S D
Sbjct:   19 YDFVLMLATEKTGGLFDFDGTLPVIVLQFLGLMFVLNSMLYAPLLETIDTRNFYIRRSLEKASTFLTEANQLNLKYENKATRARKAAKIDIVTYQKLYKDILDNEMRSSQNSIDDFVAETTKNFDDNKEKILASLD 154          
BLAST of mRNA_M-pyrifera_M_contig118358.3797.1 vs. uniprot
Match: A0A2I4Q2L6_9PHAE (ATP synthase CF0 B' chain subunit II n=1 Tax=Dictyopteris divaricata TaxID=156996 RepID=A0A2I4Q2L6_9PHAE)

HSP 1 Score: 160 bits (404), Expect = 9.430e-48
Identity = 87/137 (63.50%), Postives = 108/137 (78.83%), Query Frame = 1
Query:   10 NYNSILIIGTEKTGGLFDFDGTLPVIALQFIIFMFLLNFILYTPLLDTIDERNIYISKSLSEATRILTKSNELNLKYEKKTSKARKAVALDLLTYQQLYKDILEEKMKSSEDFINKFLMETTKNFEENKESILKSFD 420
            N+N++ +I TEKTGGLFDFDGTL VI  QFI+ M +L  +LY PLLD +DER  Y+ +SL EA+ IL +SN LN KYEKKTS+ARK V LDLL YQ+LYKD+L++KMKS + FI++FLM T KN E +KE ILKSFD
Sbjct:    3 NFNTLFLITTEKTGGLFDFDGTLIVIVFQFILLMVILPSLLYNPLLDIMDERMTYMEESLEEASTILAESNRLNSKYEKKTSRARKVVELDLLMYQKLYKDLLDDKMKSLQFFIDEFLMVTIKNSETSKEIILKSFD 139          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig118358.3797.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D1J794_ECTSI2.910e-8497.14ATP synthase subunit b, chloroplastic n=8 Tax=Ecto... [more]
A0A1I9LVV6_9PHAE3.480e-7688.57ATP synthase subunit b, chloroplastic n=1 Tax=Pleu... [more]
A0A0S0GJT6_COSCS1.070e-7283.57ATP synthase CF0 B' chain subunit II n=27 Tax=Lami... [more]
A0A8F0FAP4_9PHAE2.410e-6980.00CF0 subunit II n=1 Tax=Desmarestia aculeata TaxID=... [more]
A0A8F0F9X4_9PHAE1.980e-6878.57CF0 subunit II n=1 Tax=Chorda asiatica TaxID=12815... [more]
D1GJH9_FUCVE2.970e-6376.43ATP synthase CF0 B' chain subunit II n=3 Tax=Fucac... [more]
A0A1L2F1S8_9PHAE6.640e-6074.29AtpG n=13 Tax=Sargassaceae TaxID=3014 RepID=A0A1L2... [more]
A0A8F0F723_9PHAE1.630e-5368.61CF0 subunit II n=1 Tax=Protohalopteris sp. TaxID=2... [more]
A0A8E5XRC8_9PHAE2.260e-4961.03ATP synthase CF0 beta' subunit n=1 Tax=Ishige okam... [more]
A0A2I4Q2L6_9PHAE9.430e-4863.50ATP synthase CF0 B' chain subunit II n=1 Tax=Dicty... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig118358contigM-pyrifera_M_contig118358:131..550 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score255.8
Seed ortholog evalue1.2e-65
Seed eggNOG ortholog2880.D1J794
Preferred nameatpG
KEGG koko:K02109
KEGG TC3.A.2.1
KEGG Pathwayko00190,ko00195,ko01100,map00190,map00195,map01100
KEGG ModuleM00157
Hectar predicted targeting categoryother localisation
EggNOG free text desc.ATP synthesis coupled proton transport
EggNOG OGs2S8NX@2759,COG0711@1
COG Functional cat.C
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko00194
Exons1
Model size420
Cds size420
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815703.0399055-CDS-M-pyrifera_M_contig118358:130..5501622815703.0399055-CDS-M-pyrifera_M_contig118358:130..550Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig118358 131..550 +
1692277529.630455-CDS-M-pyrifera_M_contig118358:130..5501692277529.630455-CDS-M-pyrifera_M_contig118358:130..550Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig118358 131..550 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig118358.3797.1prot_M-pyrifera_M_contig118358.3797.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig118358 131..550 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig118358.3797.1

>prot_M-pyrifera_M_contig118358.3797.1 ID=prot_M-pyrifera_M_contig118358.3797.1|Name=mRNA_M-pyrifera_M_contig118358.3797.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=140bp
MFDNYNSILIIGTEKTGGLFDFDGTLPVIALQFIIFMFLLNFILYTPLLD
TIDERNIYISKSLSEATRILTKSNELNLKYEKKTSKARKAVALDLLTYQQ
LYKDILEEKMKSSEDFINKFLMETTKNFEENKESILKSFD
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mRNA from alignment at M-pyrifera_M_contig118358:131..550+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig118358.3797.1 ID=mRNA_M-pyrifera_M_contig118358.3797.1|Name=mRNA_M-pyrifera_M_contig118358.3797.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=420bp|location=Sequence derived from alignment at M-pyrifera_M_contig118358:131..550+ (Macrocystis pyrifera P11B4 male)
ATGTTTGATAACTATAACTCCATTTTAATAATAGGTACGGAAAAAACTGG AGGATTATTTGATTTTGATGGAACACTACCAGTTATAGCATTACAATTTA TAATTTTTATGTTTCTTTTAAATTTTATTTTGTATACACCTTTGTTAGAT ACTATTGATGAACGAAATATTTATATTAGTAAAAGTTTATCTGAAGCTAC ACGTATATTAACAAAGTCAAATGAATTAAATCTAAAGTATGAAAAAAAGA CATCTAAAGCGCGTAAAGCAGTTGCATTAGATTTATTAACTTATCAACAA TTATATAAAGATATTTTAGAGGAAAAAATGAAATCTTCAGAAGACTTCAT TAACAAATTTTTGATGGAAACGACTAAAAATTTTGAAGAAAATAAGGAAA GTATTTTAAAAAGCTTTGAT
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig118358:131..550+

>mRNA_M-pyrifera_M_contig118358.3797.1 ID=mRNA_M-pyrifera_M_contig118358.3797.1|Name=mRNA_M-pyrifera_M_contig118358.3797.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=840bp|location=Sequence derived from alignment at M-pyrifera_M_contig118358:131..550+ (Macrocystis pyrifera P11B4 male)
ATGTTTGATAACTATAACTCCATTTTAATAATAGGTACGGAAAAAACTGG
AGGATTATTTGATTTTGATGGAACACTACCAGTTATAGCATTACAATTTA
TAATTTTTATGTTTCTTTTAAATTTTATTTTGTATACACCTTTGTTAGAT
ACTATTGATGAACGAAATATTTATATTAGTAAAAGTTTATCTGAAGCTAC
ACGTATATTAACAAAGTCAAATGAATTAAATCTAAAGTATGAAAAAAAGA
CATCTAAAGCGCGTAAAGCAGTTGCATTAGATTTATTAACTTATCAACAA
TTATATAAAGATATTTTAGAGGAAAAAATGAAATCTTCAGAAGACTTCAT
TAACAAATTTTTGATGGAAACGACTAAAAATTTTGAAGAAAATAAGGAAA
GTATTTTAAAAAGCTTTGATATGTTTGATAACTATAACTCCATTTTAATA
ATAGGTACGGAAAAAACTGGAGGATTATTTGATTTTGATGGAACACTACC
AGTTATAGCATTACAATTTATAATTTTTATGTTTCTTTTAAATTTTATTT
TGTATACACCTTTGTTAGATACTATTGATGAACGAAATATTTATATTAGT
AAAAGTTTATCTGAAGCTACACGTATATTAACAAAGTCAAATGAATTAAA
TCTAAAGTATGAAAAAAAGACATCTAAAGCGCGTAAAGCAGTTGCATTAG
ATTTATTAACTTATCAACAATTATATAAAGATATTTTAGAGGAAAAAATG
AAATCTTCAGAAGACTTCATTAACAAATTTTTGATGGAAACGACTAAAAA
TTTTGAAGAAAATAAGGAAAGTATTTTAAAAAGCTTTGAT
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