mRNA_M-pyrifera_M_contig118347.3793.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig118347.3793.1
Unique NamemRNA_M-pyrifera_M_contig118347.3793.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig118347.3793.1 vs. uniprot
Match: A0A7S4HUD0_9EUKA (Hypothetical protein n=1 Tax=Vannella sp. CB-2014 TaxID=1487602 RepID=A0A7S4HUD0_9EUKA)

HSP 1 Score: 87.4 bits (215), Expect = 1.440e-18
Identity = 41/74 (55.41%), Postives = 52/74 (70.27%), Query Frame = 1 
Query:   10 LTGWTRIFQGVDLSSTCKEAWDAYDVNGAVLLGCLLPEGVEATNLIRRGARVIQNPPNLPFKPFRGFMYNQDDL 231
            L+GW  +FQ VDL    KE + +Y+V+GAV LGC  PEGV    LI RGA +  NP +LPFKP+RGFMY Q++L
Sbjct:   33 LSGW--VFQAVDLQEDTKENFASYNVSGAVFLGCTFPEGVRKNELISRGAIIHDNPSDLPFKPYRGFMYRQEEL 104
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BLAST of mRNA_M-pyrifera_M_contig118347.3793.1 vs. uniprot
Match: A0A4Y3VJX8_9ACTN (Uncharacterized protein n=3 Tax=Streptomyces TaxID=1883 RepID=A0A4Y3VJX8_9ACTN)

HSP 1 Score: 52.8 bits (125), Expect = 3.390e-6
Identity = 30/66 (45.45%), Postives = 40/66 (60.61%), Query Frame = 1 
Query:   34 QGVDLSSTCKEAWDAYDVNGAVLLGCLLPEGVEATNLIRRGARVIQNPPNLPFKPFRGFMYNQDDL 231
            Q VDL++   +A  A DV GAV LGC + +   AT +   GA V    P+LPF P+RGF+Y  D+L
Sbjct:   41 QAVDLTART-DALLAVDVTGAVFLGCPMTDAA-ATRVAAAGALVFPPIPDLPFDPYRGFVYTPDEL 104
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BLAST of mRNA_M-pyrifera_M_contig118347.3793.1 vs. uniprot
Match: A0A7S2A5J9_TRICV (Hypothetical protein n=1 Tax=Trieres chinensis TaxID=1514140 RepID=A0A7S2A5J9_TRICV)

HSP 1 Score: 51.6 bits (122), Expect = 8.490e-6
Identity = 23/42 (54.76%), Postives = 28/42 (66.67%), Query Frame = 1 
Query:  106 GCLLPEGVEATNLIRRGARVIQNPPNLPFKPFRGFMYNQDDL 231
            GC LP    A+ L  +GARV +NP +LPF PFRGFMY   +L
Sbjct:    9 GCTLPTHTNASELRAQGARVNENPKDLPFLPFRGFMYRSGEL 50
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BLAST of mRNA_M-pyrifera_M_contig118347.3793.1 vs. uniprot
Match: A0A0N1NBL5_9ACTN (Uncharacterized protein n=1 Tax=Actinobacteria bacterium OK074 TaxID=1592327 RepID=A0A0N1NBL5_9ACTN)

HSP 1 Score: 50.8 bits (120), Expect = 1.620e-5
Identity = 31/67 (46.27%), Postives = 42/67 (62.69%), Query Frame = 1 
Query:   34 QGVDLSSTCKEAWDAYDVNGAVLLGCLL-PEGVEATNLIRRGARVIQNPPNLPFKPFRGFMYNQDDL 231
            Q VDL+ T  +A    D +GAV LGC + PE   AT++   GA V    P+LPF P+RGF+Y+ D+L
Sbjct:   40 QAVDLT-TRTDALLVLDCSGAVFLGCAMAPEA--ATHVRSTGALVFPPVPDLPFDPYRGFVYSPDEL 103
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BLAST of mRNA_M-pyrifera_M_contig118347.3793.1 vs. uniprot
Match: UPI00167DBF14 (LOG family protein n=1 Tax=Streptomyces echinoruber TaxID=68898 RepID=UPI00167DBF14)

HSP 1 Score: 50.4 bits (119), Expect = 2.220e-5
Identity = 33/67 (49.25%), Postives = 38/67 (56.72%), Query Frame = 1 
Query:   34 QGVDLSSTCKEAWDAYDVNGAVLLGCLLPEGVEATNLIR-RGARVIQNPPNLPFKPFRGFMYNQDDL 231
            Q VDL+    EA  A D  GAV LGC  P   EA   IR RGA V    P+LPF P+RGF+Y   +L
Sbjct:   40 QSVDLTGRT-EALLAADTTGAVFLGC--PMAPEAAARIRARGALVFPPVPDLPFDPYRGFVYTPQEL 103
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig118347.3793.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 5
Match NameE-valueIdentityDescription
A0A7S4HUD0_9EUKA1.440e-1855.41Hypothetical protein n=1 Tax=Vannella sp. CB-2014 ... [more]
A0A4Y3VJX8_9ACTN3.390e-645.45Uncharacterized protein n=3 Tax=Streptomyces TaxID... [more]
A0A7S2A5J9_TRICV8.490e-654.76Hypothetical protein n=1 Tax=Trieres chinensis Tax... [more]
A0A0N1NBL5_9ACTN1.620e-546.27Uncharacterized protein n=1 Tax=Actinobacteria bac... [more]
UPI00167DBF142.220e-549.25LOG family protein n=1 Tax=Streptomyces echinorube... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig118347contigM-pyrifera_M_contig118347:320..550 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size231
Cds size231
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815702.8474844-CDS-M-pyrifera_M_contig118347:319..5501622815702.8474844-CDS-M-pyrifera_M_contig118347:319..550Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig118347 320..550 +
1692277529.5471482-CDS-M-pyrifera_M_contig118347:319..5501692277529.5471482-CDS-M-pyrifera_M_contig118347:319..550Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig118347 320..550 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig118347.3793.1prot_M-pyrifera_M_contig118347.3793.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig118347 320..550 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig118347.3793.1

>prot_M-pyrifera_M_contig118347.3793.1 ID=prot_M-pyrifera_M_contig118347.3793.1|Name=mRNA_M-pyrifera_M_contig118347.3793.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=77bp
MQSLTGWTRIFQGVDLSSTCKEAWDAYDVNGAVLLGCLLPEGVEATNLIR
RGARVIQNPPNLPFKPFRGFMYNQDDL
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mRNA from alignment at M-pyrifera_M_contig118347:320..550+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig118347.3793.1 ID=mRNA_M-pyrifera_M_contig118347.3793.1|Name=mRNA_M-pyrifera_M_contig118347.3793.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=231bp|location=Sequence derived from alignment at M-pyrifera_M_contig118347:320..550+ (Macrocystis pyrifera P11B4 male)
ATGCAGTCGCTGACGGGCTGGACAAGGATCTTTCAAGGAGTTGACTTGTC
ATCAACATGCAAGGAAGCATGGGACGCCTACGACGTGAATGGGGCCGTTC
TCCTGGGCTGTTTGCTGCCCGAGGGAGTGGAGGCAACAAACCTGATCCGA
AGAGGCGCGAGAGTGATCCAGAACCCCCCGAACTTGCCCTTCAAGCCCTT
CAGAGGTTTCATGTATAACCAAGACGATCTG
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig118347:320..550+

>mRNA_M-pyrifera_M_contig118347.3793.1 ID=mRNA_M-pyrifera_M_contig118347.3793.1|Name=mRNA_M-pyrifera_M_contig118347.3793.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=462bp|location=Sequence derived from alignment at M-pyrifera_M_contig118347:320..550+ (Macrocystis pyrifera P11B4 male)
ATGCAGTCGCTGACGGGCTGGACAAGGATCTTTCAAGGAGTTGACTTGTC
ATCAACATGCAAGGAAGCATGGGACGCCTACGACGTGAATGGGGCCGTTC
TCCTGGGCTGTTTGCTGCCCGAGGGAGTGGAGGCAACAAACCTGATCCGA
AGAGGCGCGAGAGTGATCCAGAACCCCCCGAACTTGCCCTTCAAGCCCTT
CAGAGGTTTCATGTATAACCAAGACGATCTGATGCAGTCGCTGACGGGCT
GGACAAGGATCTTTCAAGGAGTTGACTTGTCATCAACATGCAAGGAAGCA
TGGGACGCCTACGACGTGAATGGGGCCGTTCTCCTGGGCTGTTTGCTGCC
CGAGGGAGTGGAGGCAACAAACCTGATCCGAAGAGGCGCGAGAGTGATCC
AGAACCCCCCGAACTTGCCCTTCAAGCCCTTCAGAGGTTTCATGTATAAC
CAAGACGATCTG
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