mRNA_M-pyrifera_M_contig118307.3786.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig118307.3786.1
Unique NamemRNA_M-pyrifera_M_contig118307.3786.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig118307.3786.1 vs. uniprot
Match: A0A3M8G720_9BACT (RagB/SusD family nutrient uptake outer membrane protein n=1 Tax=Balneola sp. TaxID=2024824 RepID=A0A3M8G720_9BACT)

HSP 1 Score: 106 bits (264), Expect = 1.510e-25
Identity = 47/58 (81.03%), Postives = 54/58 (93.10%), Query Frame = 1 
Query:    1 DRWWNSLYQGIRRANVVIEKVPLIEMDEQLKSRYVAEAQFLRGSYYFDLVRAFGGVPL 174
            DRWWN+LY GIRRANVVIE VPLI+MDE+L++RYVAEA+FLR S+YFDLVR FGGVPL
Sbjct:  102 DRWWNTLYLGIRRANVVIESVPLIQMDEELRARYVAEAKFLRASFYFDLVRGFGGVPL 159
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BLAST of mRNA_M-pyrifera_M_contig118307.3786.1 vs. uniprot
Match: A0A2E9UFS9_9BACT (RagB/SusD family nutrient uptake outer membrane protein n=1 Tax=Balneola sp. TaxID=2024824 RepID=A0A2E9UFS9_9BACT)

HSP 1 Score: 106 bits (264), Expect = 1.520e-25
Identity = 47/58 (81.03%), Postives = 53/58 (91.38%), Query Frame = 1 
Query:    1 DRWWNSLYQGIRRANVVIEKVPLIEMDEQLKSRYVAEAQFLRGSYYFDLVRAFGGVPL 174
            DRWWN+LYQGIRRANVVIEKVP+I M+E LK+RY+ EAQFLR  YYFDLVR+FGGVPL
Sbjct:  102 DRWWNALYQGIRRANVVIEKVPVIPMNESLKARYIGEAQFLRALYYFDLVRSFGGVPL 159
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BLAST of mRNA_M-pyrifera_M_contig118307.3786.1 vs. uniprot
Match: A0A7X7LIQ7_9BACT (RagB/SusD family nutrient uptake outer membrane protein (Fragment) n=1 Tax=Bacteroidales bacterium TaxID=2030927 RepID=A0A7X7LIQ7_9BACT)

HSP 1 Score: 100 bits (250), Expect = 1.870e-25
Identity = 45/58 (77.59%), Postives = 51/58 (87.93%), Query Frame = 1 
Query:    1 DRWWNSLYQGIRRANVVIEKVPLIEMDEQLKSRYVAEAQFLRGSYYFDLVRAFGGVPL 174
            DRWW +LY+GI+RANVVIEKVP IEMD  L+ RY+AEA FLRG YYFDLVRA+GGVPL
Sbjct:  103 DRWWATLYEGIKRANVVIEKVPEIEMDTNLRGRYIAEAHFLRGLYYFDLVRAWGGVPL 160
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BLAST of mRNA_M-pyrifera_M_contig118307.3786.1 vs. uniprot
Match: A0A3D1G866_9BACT (RagB/SusD family nutrient uptake outer membrane protein n=1 Tax=Balneolaceae bacterium TaxID=2053516 RepID=A0A3D1G866_9BACT)

HSP 1 Score: 105 bits (262), Expect = 2.950e-25
Identity = 46/58 (79.31%), Postives = 52/58 (89.66%), Query Frame = 1 
Query:    1 DRWWNSLYQGIRRANVVIEKVPLIEMDEQLKSRYVAEAQFLRGSYYFDLVRAFGGVPL 174
            DRWWN+LYQGIRRAN+VIEK+P +EMD  L+ RYVAEA+FLR  YYFDLVRAFGGVPL
Sbjct:  104 DRWWNALYQGIRRANIVIEKIPQVEMDASLQERYVAEAKFLRALYYFDLVRAFGGVPL 161
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BLAST of mRNA_M-pyrifera_M_contig118307.3786.1 vs. uniprot
Match: A0A6C1P445_9BACT (RagB/SusD family nutrient uptake outer membrane protein n=1 Tax=Balneolaceae bacterium TaxID=2053516 RepID=A0A6C1P445_9BACT)

HSP 1 Score: 104 bits (260), Expect = 5.520e-25
Identity = 47/58 (81.03%), Postives = 51/58 (87.93%), Query Frame = 1 
Query:    1 DRWWNSLYQGIRRANVVIEKVPLIEMDEQLKSRYVAEAQFLRGSYYFDLVRAFGGVPL 174
            DRWW  LYQGIRRANVVIEKVP +EMD  LK+RY+ EA+FLRG YYFDLVRAFGGVPL
Sbjct:  103 DRWWAGLYQGIRRANVVIEKVPAVEMDASLKNRYLGEARFLRGLYYFDLVRAFGGVPL 160
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BLAST of mRNA_M-pyrifera_M_contig118307.3786.1 vs. uniprot
Match: A0A521BWD6_9BACT (Starch-binding associating with outer membrane n=1 Tax=Gracilimonas mengyeensis TaxID=1302730 RepID=A0A521BWD6_9BACT)

HSP 1 Score: 104 bits (260), Expect = 5.550e-25
Identity = 45/58 (77.59%), Postives = 54/58 (93.10%), Query Frame = 1 
Query:    1 DRWWNSLYQGIRRANVVIEKVPLIEMDEQLKSRYVAEAQFLRGSYYFDLVRAFGGVPL 174
            DRWWN LY+GIRRAN+V+++VP IEM+E LK+RY+AEA+FLRG YYFDLVRAFGGVPL
Sbjct:  104 DRWWNVLYEGIRRANIVVQEVPTIEMNENLKNRYLAEARFLRGLYYFDLVRAFGGVPL 161
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BLAST of mRNA_M-pyrifera_M_contig118307.3786.1 vs. uniprot
Match: A0A838TAY1_9BACT (RagB/SusD family nutrient uptake outer membrane protein n=1 Tax=Chitinophagales bacterium TaxID=2448779 RepID=A0A838TAY1_9BACT)

HSP 1 Score: 104 bits (260), Expect = 5.750e-25
Identity = 46/58 (79.31%), Postives = 54/58 (93.10%), Query Frame = 1 
Query:    1 DRWWNSLYQGIRRANVVIEKVPLIEMDEQLKSRYVAEAQFLRGSYYFDLVRAFGGVPL 174
            DRWWN+LY+GI+RANVVIEKVP I+MDE LK+RY+AEA+FLR  YYFDLVRA+GGVPL
Sbjct:  107 DRWWNALYEGIKRANVVIEKVPAIQMDEGLKNRYIAEAKFLRALYYFDLVRAWGGVPL 164
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BLAST of mRNA_M-pyrifera_M_contig118307.3786.1 vs. uniprot
Match: UPI001F45F5F3 (RagB/SusD family nutrient uptake outer membrane protein n=1 Tax=Rhodohalobacter sp. 614A TaxID=2908649 RepID=UPI001F45F5F3)

HSP 1 Score: 103 bits (258), Expect = 1.060e-24
Identity = 46/58 (79.31%), Postives = 54/58 (93.10%), Query Frame = 1 
Query:    1 DRWWNSLYQGIRRANVVIEKVPLIEMDEQLKSRYVAEAQFLRGSYYFDLVRAFGGVPL 174
            DRWWN+LY+GI+RANVV+EKV  I+MD+QLKSRY+AEA FLRG YYFDLVRA+GGVPL
Sbjct:  103 DRWWNALYEGIKRANVVLEKVEPIQMDQQLKSRYLAEASFLRGLYYFDLVRAWGGVPL 160
[Close]
BLAST of mRNA_M-pyrifera_M_contig118307.3786.1 vs. uniprot
Match: A0A2E6N6Y5_9BACT (RagB/SusD family nutrient uptake outer membrane protein n=1 Tax=Balneola sp. TaxID=2024824 RepID=A0A2E6N6Y5_9BACT)

HSP 1 Score: 102 bits (255), Expect = 2.740e-24
Identity = 44/58 (75.86%), Postives = 51/58 (87.93%), Query Frame = 1 
Query:    1 DRWWNSLYQGIRRANVVIEKVPLIEMDEQLKSRYVAEAQFLRGSYYFDLVRAFGGVPL 174
            DRWWN LYQGIRRANVVIEK+PLI MDE LK++Y+ EA+FLR  YYFDLVRAFG +P+
Sbjct:  102 DRWWNGLYQGIRRANVVIEKLPLITMDESLKNKYIGEAKFLRALYYFDLVRAFGSIPI 159
[Close]
BLAST of mRNA_M-pyrifera_M_contig118307.3786.1 vs. uniprot
Match: A0A6I5IB28_9BACT (RagB/SusD family nutrient uptake outer membrane protein n=1 Tax=Bacteroidales bacterium TaxID=2030927 RepID=A0A6I5IB28_9BACT)

HSP 1 Score: 102 bits (253), Expect = 5.250e-24
Identity = 44/57 (77.19%), Postives = 53/57 (92.98%), Query Frame = 1 
Query:    1 DRWWNSLYQGIRRANVVIEKVPLIEMDEQLKSRYVAEAQFLRGSYYFDLVRAFGGVP 171
            DRWW++LY+GI+RANVVIEKVP I M+EQL++RY+AEA FLRG +YFDLVRAFGGVP
Sbjct:  105 DRWWSALYEGIKRANVVIEKVPSINMNEQLRNRYIAEASFLRGLFYFDLVRAFGGVP 161
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig118307.3786.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A3M8G720_9BACT1.510e-2581.03RagB/SusD family nutrient uptake outer membrane pr... [more]
A0A2E9UFS9_9BACT1.520e-2581.03RagB/SusD family nutrient uptake outer membrane pr... [more]
A0A7X7LIQ7_9BACT1.870e-2577.59RagB/SusD family nutrient uptake outer membrane pr... [more]
A0A3D1G866_9BACT2.950e-2579.31RagB/SusD family nutrient uptake outer membrane pr... [more]
A0A6C1P445_9BACT5.520e-2581.03RagB/SusD family nutrient uptake outer membrane pr... [more]
A0A521BWD6_9BACT5.550e-2577.59Starch-binding associating with outer membrane n=1... [more]
A0A838TAY1_9BACT5.750e-2579.31RagB/SusD family nutrient uptake outer membrane pr... [more]
UPI001F45F5F31.060e-2479.31RagB/SusD family nutrient uptake outer membrane pr... [more]
A0A2E6N6Y5_9BACT2.740e-2475.86RagB/SusD family nutrient uptake outer membrane pr... [more]
A0A6I5IB28_9BACT5.250e-2477.19RagB/SusD family nutrient uptake outer membrane pr... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig118307contigM-pyrifera_M_contig118307:254..427 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeBacteria
Seed ortholog score88.6
Seed ortholog evalue1.1e-15
Seed eggNOG ortholog643867.Ftrac_1804
KEGG koko:K21572
KEGG TC8.A.46.1,8.A.46.3
Hectar predicted targeting categoryno signal peptide or anchor
EggNOG free text desc.PFAM RagB SusD domain protein
EggNOG OGs47KSA@768503,4NDYU@976,COG0446@1,COG0446@2
COG Functional cat.S
Best tax levelCytophagia
Best eggNOG OGNA|NA|NA
BRITEko00000,ko02000
Exons1
Model size174
Cds size174
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815702.5527642-CDS-M-pyrifera_M_contig118307:253..4271622815702.5527642-CDS-M-pyrifera_M_contig118307:253..427Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig118307 254..427 +
1692277529.422294-CDS-M-pyrifera_M_contig118307:253..4271692277529.422294-CDS-M-pyrifera_M_contig118307:253..427Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig118307 254..427 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig118307.3786.1prot_M-pyrifera_M_contig118307.3786.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig118307 254..427 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig118307.3786.1

>prot_M-pyrifera_M_contig118307.3786.1 ID=prot_M-pyrifera_M_contig118307.3786.1|Name=mRNA_M-pyrifera_M_contig118307.3786.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=58bp
DRWWNSLYQGIRRANVVIEKVPLIEMDEQLKSRYVAEAQFLRGSYYFDLV
RAFGGVPL
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mRNA from alignment at M-pyrifera_M_contig118307:254..427+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig118307.3786.1 ID=mRNA_M-pyrifera_M_contig118307.3786.1|Name=mRNA_M-pyrifera_M_contig118307.3786.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=174bp|location=Sequence derived from alignment at M-pyrifera_M_contig118307:254..427+ (Macrocystis pyrifera P11B4 male)
GATCGATGGTGGAACTCACTTTATCAAGGAATTAGAAGAGCGAATGTAGT
TATCGAGAAAGTTCCTCTAATTGAAATGGACGAGCAACTAAAAAGTCGAT
ATGTTGCAGAAGCACAATTCCTTAGAGGGTCTTATTATTTTGATTTAGTA
AGAGCTTTTGGCGGAGTTCCGTTG
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig118307:254..427+

>mRNA_M-pyrifera_M_contig118307.3786.1 ID=mRNA_M-pyrifera_M_contig118307.3786.1|Name=mRNA_M-pyrifera_M_contig118307.3786.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=348bp|location=Sequence derived from alignment at M-pyrifera_M_contig118307:254..427+ (Macrocystis pyrifera P11B4 male)
GATCGATGGTGGAACTCACTTTATCAAGGAATTAGAAGAGCGAATGTAGT
TATCGAGAAAGTTCCTCTAATTGAAATGGACGAGCAACTAAAAAGTCGAT
ATGTTGCAGAAGCACAATTCCTTAGAGGGTCTTATTATTTTGATTTAGTA
AGAGCTTTTGGCGGAGTTCCGTTGGATCGATGGTGGAACTCACTTTATCA
AGGAATTAGAAGAGCGAATGTAGTTATCGAGAAAGTTCCTCTAATTGAAA
TGGACGAGCAACTAAAAAGTCGATATGTTGCAGAAGCACAATTCCTTAGA
GGGTCTTATTATTTTGATTTAGTAAGAGCTTTTGGCGGAGTTCCGTTG
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