mRNA_M-pyrifera_M_contig118211.3774.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig118211.3774.1
Unique NamemRNA_M-pyrifera_M_contig118211.3774.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig118211.3774.1 vs. uniprot
Match: A0A7S3WRL6_9SPIT (Glutamate--cysteine ligase (Fragment) n=1 Tax=Strombidinopsis acuminata TaxID=141414 RepID=A0A7S3WRL6_9SPIT)

HSP 1 Score: 89.0 bits (219), Expect = 3.270e-20
Identity = 45/96 (46.88%), Postives = 61/96 (63.54%), Query Frame = 1
Query:    4 MSMDEILMGVPEDDTFPGLIALISTYLDLIHVDGEERERIDAYLRLLVGRARGDIQTPAEWMRQRVEEHPEYQEDGVVTPSIAADLVNDLDAVVRG 291
            M++ EIL G  + D FPGLI LI  YL+ +  D E  E + AYL L+  RA G++QTPA+WMR  + EHPEY+ D ++  ++AADLV     V  G
Sbjct:   35 MTIHEILCG--KGDYFPGLIPLIEAYLESVGCDAETEETMHAYLELIRARAAGELQTPAQWMRNLIAEHPEYKHDSIIPQAVAADLVRACVDVAEG 128          
BLAST of mRNA_M-pyrifera_M_contig118211.3774.1 vs. uniprot
Match: A0A550CXJ6_9AGAR (Glutamate--cysteine ligase n=1 Tax=Auriculariopsis ampla TaxID=97359 RepID=A0A550CXJ6_9AGAR)

HSP 1 Score: 91.7 bits (226), Expect = 2.280e-19
Identity = 47/104 (45.19%), Postives = 71/104 (68.27%), Query Frame = 1
Query:    4 MSMDEILMGVPEDDTFPGLIALISTYLDLIHVDGEERERIDAYLRLLVGRARGDIQTPAEWMRQRVEEHPEYQEDGVVTPSIAADLVNDLDAVVRGDVVAAELL 315
            M+M EI+ G  + DTFPGLI L+  YLD +H++ +E E+I  YL L+  R+ GD++TPA W+R+ V +HP+Y++D VV+  I  DL+  +D + RG   A +LL
Sbjct:  580 MTMREIMNG--KGDTFPGLIGLVDLYLDTLHIEKKEMEKIQNYLNLIRRRSTGDLKTPATWIREFVLKHPKYKKDSVVSEEINYDLMVAIDEIERGVRAAPDLL 681          
BLAST of mRNA_M-pyrifera_M_contig118211.3774.1 vs. uniprot
Match: A0A1Y2GQ47_9FUNG (Glutamate--cysteine ligase (Fragment) n=2 Tax=Mortierellaceae TaxID=4854 RepID=A0A1Y2GQ47_9FUNG)

HSP 1 Score: 90.1 bits (222), Expect = 7.880e-19
Identity = 46/106 (43.40%), Postives = 69/106 (65.09%), Query Frame = 1
Query:    1 LMSMDEILMGVPEDDTFPGLIALISTYLDLIHVDGEERERIDAYLRLLVGRARGDIQTPAEWMRQRVEEHPEYQEDGVVTPSIAADLVNDLDAVVRGDVVAAELLG 318
            LM++DEI+ G P    FPGL+ L++ YL+ +++D E R  I  YL L+  RA G + T A W+RQ V+ HP+Y++D VV+  I  DL+  L+ + +G+V   ELLG
Sbjct:  553 LMTIDEIINGNPAKG-FPGLLGLVNNYLNTLNIDIETRCEISKYLELIKKRANGTLMTAASWIRQFVQNHPDYKKDSVVSEKINFDLIKTLEKINKGEVQVPELLG 657          
BLAST of mRNA_M-pyrifera_M_contig118211.3774.1 vs. uniprot
Match: A0A7S4LN94_OXYMA (Glutamate--cysteine ligase n=1 Tax=Oxyrrhis marina TaxID=2969 RepID=A0A7S4LN94_OXYMA)

HSP 1 Score: 88.2 bits (217), Expect = 3.790e-18
Identity = 48/106 (45.28%), Postives = 64/106 (60.38%), Query Frame = 1
Query:    1 LMSMDEILMGVPEDDTFPGLIALISTYLDLIHVDGEERERIDAYLRLLVGRARGDIQTPAEWMRQRVEEHPEYQEDGVVTPSIAADLVNDLDAVVRGDVVAAELLG 318
            L S+ EIL+G   D++ PGLI +   YLD I  D   R +ID YL  +V RARGD+ TPA+WMR+ V  HP+Y++D  V  S A DLV +   +  G     E+LG
Sbjct:  570 LQSIAEILIG---DESHPGLIPMCRMYLDFIGCDSVLRSKIDKYLDFVVARARGDLMTPAQWMRKFVTSHPDYKKDSRVPASAAYDLVKECQLIGEGKKACPEVLG 672          
BLAST of mRNA_M-pyrifera_M_contig118211.3774.1 vs. uniprot
Match: W7TDR0_9STRA (Glutamate--cysteine ligase n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7TDR0_9STRA)

HSP 1 Score: 85.1 bits (209), Expect = 1.120e-17
Identity = 49/106 (46.23%), Postives = 64/106 (60.38%), Query Frame = 1
Query:    1 LMSMDEILMGVPEDDTFPGLIALISTYLDLIHVDGEERERIDAYLRLLVGRARGDIQTPAEWMRQRVEEHPEYQEDGVVTPSIAADLVNDLDAVVRGDVVAAELLG 318
            LMS++EIL G  + D F GLI L   YLD I  D E   R+  YL  +  R  G+  T A WMR+ V++HPEYQ+D VVTPSIA DL+ +   +  G +   +LLG
Sbjct:   75 LMSVEEILNG--KGDYFLGLIPLCHMYLDYIGCDRETFRRVSLYLDFIGRRGSGETMTTAAWMRKVVQQHPEYQQDSVVTPSIAYDLMMECKRIGEGRLQCPDLLG 178          
BLAST of mRNA_M-pyrifera_M_contig118211.3774.1 vs. uniprot
Match: A0A1Z5KPV7_FISSO (Glutamate--cysteine ligase n=2 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5KPV7_FISSO)

HSP 1 Score: 86.7 bits (213), Expect = 1.330e-17
Identity = 50/105 (47.62%), Postives = 63/105 (60.00%), Query Frame = 1
Query:    4 MSMDEILMGVPEDDTFPGLIALISTYLDLIHVDGEERERIDAYLRLLVGRARGDIQTPAEWMRQRVEEHPEYQEDGVVTPSIAADLVNDLDAVVRGDVVAAELLG 318
            MSM EI+ G  + D FPGLI L+  YLD I  D   RER+D YL  L  RA+G++ TPA WMR  V  HP+Y+ D +VT  IA DL+     +  G +   ELLG
Sbjct:  798 MSMAEIMCG--KGDYFPGLIPLVHAYLDHISCDKVTRERLDKYLDFLERRAKGELVTPATWMRTFVRNHPKYKRDSIVTDEIAFDLMVACRDIGLGKLHVPELLG 900          
BLAST of mRNA_M-pyrifera_M_contig118211.3774.1 vs. uniprot
Match: A0A427XSZ2_9TREE (Glutamate--cysteine ligase n=1 Tax=Apiotrichum porosum TaxID=105984 RepID=A0A427XSZ2_9TREE)

HSP 1 Score: 86.3 bits (212), Expect = 1.780e-17
Identity = 47/105 (44.76%), Postives = 66/105 (62.86%), Query Frame = 1
Query:    4 MSMDEILMGVPEDDTFPGLIALISTYLDLIHVDGEERERIDAYLRLLVGRARGDIQTPAEWMRQRVEEHPEYQEDGVVTPSIAADLVNDLDAVVRGDVVAAELLG 318
            M++DE++ G    D FPGL+ +++ YL+ I+VD   +  I  YL L+  RARGD+ TPA W+R+ +  HP Y  D +VT  I ADLV  +D + RG   A ELLG
Sbjct:  618 MTLDEVING--RSDGFPGLMGVVNAYLNSINVDVVTKCEIRRYLDLIKMRARGDLVTPATWIREFITSHPSYAHDSLVTDDIQADLVKAVDELERGVRPAPELLG 720          
BLAST of mRNA_M-pyrifera_M_contig118211.3774.1 vs. uniprot
Match: J6F5H3_TRIAS (Glutamate--cysteine ligase n=2 Tax=Trichosporon asahii var. asahii TaxID=189963 RepID=J6F5H3_TRIAS)

HSP 1 Score: 85.9 bits (211), Expect = 2.420e-17
Identity = 45/105 (42.86%), Postives = 68/105 (64.76%), Query Frame = 1
Query:    4 MSMDEILMGVPEDDTFPGLIALISTYLDLIHVDGEERERIDAYLRLLVGRARGDIQTPAEWMRQRVEEHPEYQEDGVVTPSIAADLVNDLDAVVRGDVVAAELLG 318
            MSMDEI+ G    D FPGL+ +++ YL+ I+ D   +  I  YL L+  RARGD+ TPA W+R+ +  HP+Y++D +V+  + +DL+  +D + RG   A ELLG
Sbjct:  568 MSMDEIING--RKDGFPGLMGVVNAYLNSINADVAVKMEIRKYLDLIKLRARGDLVTPAAWIRKFLTSHPDYKQDSIVSDKMQSDLITAVDEIERGIRPAPELLG 670          
BLAST of mRNA_M-pyrifera_M_contig118211.3774.1 vs. uniprot
Match: A0A4D9D0F1_9STRA (Glutamate--cysteine ligase n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9D0F1_9STRA)

HSP 1 Score: 85.1 bits (209), Expect = 2.670e-17
Identity = 49/106 (46.23%), Postives = 64/106 (60.38%), Query Frame = 1
Query:    1 LMSMDEILMGVPEDDTFPGLIALISTYLDLIHVDGEERERIDAYLRLLVGRARGDIQTPAEWMRQRVEEHPEYQEDGVVTPSIAADLVNDLDAVVRGDVVAAELLG 318
            LMS++EIL G  + D F GLI L   YLD I  D E   R+  YL  +  R  G+  T A WMR+ V++HPEYQ+D VVTPSIA DL+ +   +  G +   +LLG
Sbjct:  195 LMSVEEILNG--KGDYFLGLIPLCHMYLDYIGCDRETFRRVSLYLDFIGRRGSGETMTTAAWMRKVVQQHPEYQQDSVVTPSIAYDLMMECKRIGEGRLQCPDLLG 298          
BLAST of mRNA_M-pyrifera_M_contig118211.3774.1 vs. uniprot
Match: I2CPA3_NANGC (Glutamate--cysteine ligase (Fragment) n=1 Tax=Nannochloropsis gaditana (strain CCMP526) TaxID=1093141 RepID=I2CPA3_NANGC)

HSP 1 Score: 85.1 bits (209), Expect = 3.070e-17
Identity = 49/106 (46.23%), Postives = 64/106 (60.38%), Query Frame = 1
Query:    1 LMSMDEILMGVPEDDTFPGLIALISTYLDLIHVDGEERERIDAYLRLLVGRARGDIQTPAEWMRQRVEEHPEYQEDGVVTPSIAADLVNDLDAVVRGDVVAAELLG 318
            LMS++EIL G  + D F GLI L   YLD I  D E   R+  YL  +  R  G+  T A WMR+ V++HPEYQ+D VVTPSIA DL+ +   +  G +   +LLG
Sbjct:  218 LMSVEEILNG--KGDYFLGLIPLCHMYLDYIGCDRETFRRVSLYLDFIGRRGSGETMTTAAWMRKVVQQHPEYQQDSVVTPSIAYDLMMECKRIGEGRLQCPDLLG 321          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig118211.3774.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A7S3WRL6_9SPIT3.270e-2046.88Glutamate--cysteine ligase (Fragment) n=1 Tax=Stro... [more]
A0A550CXJ6_9AGAR2.280e-1945.19Glutamate--cysteine ligase n=1 Tax=Auriculariopsis... [more]
A0A1Y2GQ47_9FUNG7.880e-1943.40Glutamate--cysteine ligase (Fragment) n=2 Tax=Mort... [more]
A0A7S4LN94_OXYMA3.790e-1845.28Glutamate--cysteine ligase n=1 Tax=Oxyrrhis marina... [more]
W7TDR0_9STRA1.120e-1746.23Glutamate--cysteine ligase n=1 Tax=Nannochloropsis... [more]
A0A1Z5KPV7_FISSO1.330e-1747.62Glutamate--cysteine ligase n=2 Tax=Fistulifera sol... [more]
A0A427XSZ2_9TREE1.780e-1744.76Glutamate--cysteine ligase n=1 Tax=Apiotrichum por... [more]
J6F5H3_TRIAS2.420e-1742.86Glutamate--cysteine ligase n=2 Tax=Trichosporon as... [more]
A0A4D9D0F1_9STRA2.670e-1746.23Glutamate--cysteine ligase n=1 Tax=Nannochloropsis... [more]
I2CPA3_NANGC3.070e-1746.23Glutamate--cysteine ligase (Fragment) n=1 Tax=Nann... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig118211contigM-pyrifera_M_contig118211:229..546 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeArthropoda
Seed ortholog score91.7
Seed ortholog evalue2.3e-16
Seed eggNOG ortholog136037.KDR14761
KEGG rclassRC00064,RC00090
KEGG koko:K11204
KEGG ReactionR00894,R10993
KEGG Pathwayko00270,ko00480,ko01100,ko04212,ko04216,map00270,map00480,map01100,map04212,map04216
KEGG ModuleM00118
Hectar predicted targeting categoryother localisation
EggNOG free text desc.Glutamate-cysteine ligase activity. It is involved in the biological process described with glutathione biosynthetic process
EggNOG OGs38BDB@33154,3BAJC@33208,3CXBU@33213,3SI9B@50557,41UBQ@6656,KOG3754@1,KOG3754@2759
EC6.3.2.2
COG Functional cat.H
Best tax levelInsecta
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000
Exons1
Model size318
Cds size315
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815701.8349392-CDS-M-pyrifera_M_contig118211:228..5431622815701.8349392-CDS-M-pyrifera_M_contig118211:228..543Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig118211 229..543 -
1692277529.080763-CDS-M-pyrifera_M_contig118211:228..5431692277529.080763-CDS-M-pyrifera_M_contig118211:228..543Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig118211 229..543 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815701.8488133-UTR-M-pyrifera_M_contig118211:543..5461622815701.8488133-UTR-M-pyrifera_M_contig118211:543..546Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig118211 544..546 -
1692277529.0925753-UTR-M-pyrifera_M_contig118211:543..5461692277529.0925753-UTR-M-pyrifera_M_contig118211:543..546Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig118211 544..546 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig118211.3774.1prot_M-pyrifera_M_contig118211.3774.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig118211 229..543 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig118211.3774.1

>prot_M-pyrifera_M_contig118211.3774.1 ID=prot_M-pyrifera_M_contig118211.3774.1|Name=mRNA_M-pyrifera_M_contig118211.3774.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=105bp
MSMDEILMGVPEDDTFPGLIALISTYLDLIHVDGEERERIDAYLRLLVGR
ARGDIQTPAEWMRQRVEEHPEYQEDGVVTPSIAADLVNDLDAVVRGDVVA
AELLG
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mRNA from alignment at M-pyrifera_M_contig118211:229..546-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig118211.3774.1 ID=mRNA_M-pyrifera_M_contig118211.3774.1|Name=mRNA_M-pyrifera_M_contig118211.3774.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=318bp|location=Sequence derived from alignment at M-pyrifera_M_contig118211:229..546- (Macrocystis pyrifera P11B4 male)
TTGATGTCGATGGATGAGATTTTGATGGGTGTTCCTGAAGATGATACTTT CCCTGGTCTCATTGCTCTCATTTCAACCTACTTGGATTTGATTCATGTCG ATGGGGAAGAACGAGAGAGAATTGATGCATACTTGCGCTTGCTGGTGGGC AGAGCACGTGGTGATATTCAAACTCCAGCAGAGTGGATGCGACAGCGTGT AGAAGAGCATCCAGAATATCAAGAAGATGGGGTTGTCACTCCTTCAATTG CTGCAGATTTGGTGAATGATTTGGATGCAGTGGTTCGTGGCGATGTAGTA GCAGCAGAGTTACTTGGC
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig118211:229..546-

>mRNA_M-pyrifera_M_contig118211.3774.1 ID=mRNA_M-pyrifera_M_contig118211.3774.1|Name=mRNA_M-pyrifera_M_contig118211.3774.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=630bp|location=Sequence derived from alignment at M-pyrifera_M_contig118211:229..546- (Macrocystis pyrifera P11B4 male)
ATGTCGATGGATGAGATTTTGATGGGTGTTCCTGAAGATGATACTTTCCC
TGGTCTCATTGCTCTCATTTCAACCTACTTGGATTTGATTCATGTCGATG
GGGAAGAACGAGAGAGAATTGATGCATACTTGCGCTTGCTGGTGGGCAGA
GCACGTGGTGATATTCAAACTCCAGCAGAGTGGATGCGACAGCGTGTAGA
AGAGCATCCAGAATATCAAGAAGATGGGGTTGTCACTCCTTCAATTGCTG
CAGATTTGGTGAATGATTTGGATGCAGTGGTTCGTGGCGATGTAGTAGCA
GCAGAGTTACTTGGCATGTCGATGGATGAGATTTTGATGGGTGTTCCTGA
AGATGATACTTTCCCTGGTCTCATTGCTCTCATTTCAACCTACTTGGATT
TGATTCATGTCGATGGGGAAGAACGAGAGAGAATTGATGCATACTTGCGC
TTGCTGGTGGGCAGAGCACGTGGTGATATTCAAACTCCAGCAGAGTGGAT
GCGACAGCGTGTAGAAGAGCATCCAGAATATCAAGAAGATGGGGTTGTCA
CTCCTTCAATTGCTGCAGATTTGGTGAATGATTTGGATGCAGTGGTTCGT
GGCGATGTAGTAGCAGCAGAGTTACTTGGC
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