mRNA_M-pyrifera_M_contig118205.3773.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig118205.3773.1
Unique NamemRNA_M-pyrifera_M_contig118205.3773.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
[Close]
BLAST of mRNA_M-pyrifera_M_contig118205.3773.1 vs. uniprot
Match: A0A2D7FU35_9HYPH (Glyoxalase n=2 Tax=Hyphomicrobiales TaxID=356 RepID=A0A2D7FU35_9HYPH)

HSP 1 Score: 197 bits (500), Expect = 2.040e-62
Identity = 87/120 (72.50%), Postives = 98/120 (81.67%), Query Frame = 1 
Query:    1 DVTLALGNSGALQIELIYQNNDEPSVYKEFLDAGREGVHHFGMMPVDYAATCAQYRGLGHEAAFVCDIGGAELTYFDTVSSVGHFIELWDNNDIYKDLFSLVEDAAVGWDGSDPVRPGPL 360
            D+++ALGNSG +QIELIY  ND PSVYKEFLDAG+ GVHHFGMMP ++  TC +Y   GHEAAF C +GGA L YFDTV S+GHFIELWDNN +Y DLF LVEDAA GWDGSDPVRP PL
Sbjct:   55 DISIALGNSGDVQIELIYCENDAPSVYKEFLDAGKTGVHHFGMMPENFEETCKEYAARGHEAAFECTVGGAPLVYFDTVDSIGHFIELWDNNQVYLDLFKLVEDAAKGWDGSDPVRPSPL 174
[Close]
BLAST of mRNA_M-pyrifera_M_contig118205.3773.1 vs. uniprot
Match: A0A1Z9UKT1_9GAMM (VOC domain-containing protein n=4 Tax=Bacteria TaxID=2 RepID=A0A1Z9UKT1_9GAMM)

HSP 1 Score: 193 bits (490), Expect = 6.780e-61
Identity = 85/116 (73.28%), Postives = 98/116 (84.48%), Query Frame = 1 
Query:    1 DVTLALGNSGALQIELIYQNNDEPSVYKEFLDAGREGVHHFGMMPVDYAATCAQYRGLGHEAAFVCDIGGAELTYFDTVSSVGHFIELWDNNDIYKDLFSLVEDAAVGWDGSDPVR 348
            DV+LALGNSG +Q+ELIY  +D PSVYKEFLDAGR GVHHFGMMPV++  TCA Y+ LGHEAAF C +GG+ L YFDTV +VGHFIELW N+D+YKDLF +VEDAA GWDG DPVR
Sbjct:   55 DVSLALGNSGDVQVELIYCEDDSPSVYKEFLDAGRTGVHHFGMMPVNFEETCAHYKSLGHEAAFECTVGGSPLVYFDTVDTVGHFIELWSNSDVYKDLFMMVEDAAKGWDGKDPVR 170
[Close]
BLAST of mRNA_M-pyrifera_M_contig118205.3773.1 vs. uniprot
Match: A0A836TJN4_9PROT (VOC family protein n=1 Tax=Sneathiellales bacterium TaxID=2528251 RepID=A0A836TJN4_9PROT)

HSP 1 Score: 188 bits (478), Expect = 4.400e-59
Identity = 84/120 (70.00%), Postives = 99/120 (82.50%), Query Frame = 1 
Query:    1 DVTLALGNSGALQIELIYQNNDEPSVYKEFLDAGREGVHHFGMMPVDYAATCAQYRGLGHEAAFVCDIGGAELTYFDTVSSVGHFIELWDNNDIYKDLFSLVEDAAVGWDGSDPVRPGPL 360
            D+TLALGN+G +QIELI QNNDEPSVYKEFLDAGR GVHHFG+MP DYAA CA++R LGHEAAF   +GGA+L YFDTV S+GHF E W N+ ++ DLF  +E+AA GWDG +PVRP PL
Sbjct:   54 DLTLALGNTGDVQIELILQNNDEPSVYKEFLDAGRIGVHHFGLMPEDYAAECAKFRELGHEAAFEATVGGADLVYFDTVDSIGHFTEFWTNDSVFIDLFLEIENAAKGWDGKNPVRPSPL 173
[Close]
BLAST of mRNA_M-pyrifera_M_contig118205.3773.1 vs. uniprot
Match: A0A2E8J3U8_9GAMM (Glyoxalase n=1 Tax=Gammaproteobacteria bacterium TaxID=1913989 RepID=A0A2E8J3U8_9GAMM)

HSP 1 Score: 175 bits (443), Expect = 9.870e-54
Identity = 77/119 (64.71%), Postives = 94/119 (78.99%), Query Frame = 1 
Query:    1 DVTLALGNSGALQIELIYQNNDEPSVYKEFLDAGREGVHHFGMMPVDYAATCAQYRGLGHEAAFVCDIGGAELTYFDTVSSVGHFIELWDNNDIYKDLFSLVEDAAVGWDGSDPVRPGP 357
            DV +ALGNSG +QIELI QNNDEPSVYKE +DAGR G+HHFG+MP DY    AQY  LGHE AF C++GG+ELTYFDT+ ++GH+ ELW N++ + D+  +VEDAA  WDGSD VRP P
Sbjct:   56 DVDIALGNSGDVQIELICQNNDEPSVYKEAVDAGRIGLHHFGLMPTDYELAKAQYHELGHEVAFECNLGGSELTYFDTLDTIGHYTELWQNSEAFNDIARIVEDAAKDWDGSDRVRPAP 174
[Close]
BLAST of mRNA_M-pyrifera_M_contig118205.3773.1 vs. uniprot
Match: A0A496WZG5_9GAMM (VOC family protein n=1 Tax=Gammaproteobacteria bacterium TaxID=1913989 RepID=A0A496WZG5_9GAMM)

HSP 1 Score: 173 bits (438), Expect = 8.790e-53
Identity = 77/120 (64.17%), Postives = 96/120 (80.00%), Query Frame = 1 
Query:    1 DVTLALGNSGALQIELIYQNNDEPSVYKEFLDAGREGVHHFGMMPVDYAATCAQYRGLGHEAAFVCDIGGAELTYFDTVSSVGHFIELWDNNDIYKDLFSLVEDAAVGWDGSDPVRPGPL 360
            D+++ALGNSG LQIELI Q+N+  SVYK+FL+AGR+GVHH  +MP DYAAT AQY   GH+ AF   +GGA + YFDT+  VGH+IELWDN+ ++KD+F LVEDAA  WDGS+PVRP PL
Sbjct:   69 DISVALGNSGDLQIELIVQHNEAKSVYKDFLEAGRQGVHHIALMPEDYAATHAQYLSSGHKPAFELSLGGAPVVYFDTLDKVGHYIELWDNSSVFKDMFLLVEDAAKNWDGSNPVRPMPL 188
[Close]
BLAST of mRNA_M-pyrifera_M_contig118205.3773.1 vs. uniprot
Match: A0A496WXQ7_9GAMM (VOC family protein n=1 Tax=Gammaproteobacteria bacterium TaxID=1913989 RepID=A0A496WXQ7_9GAMM)

HSP 1 Score: 167 bits (422), Expect = 1.490e-50
Identity = 69/116 (59.48%), Postives = 93/116 (80.17%), Query Frame = 1 
Query:    1 DVTLALGNSGALQIELIYQNNDEPSVYKEFLDAGREGVHHFGMMPVDYAATCAQYRGLGHEAAFVCDIGGAELTYFDTVSSVGHFIELWDNNDIYKDLFSLVEDAAVGWDGSDPVR 348
            D+++ALGNSG LQIELI Q+ND  SVY++FL+AGR GVHH  +MP DY +TC +YR  GH+ AF   +GGA + YFD + ++GH+IELWDN+D++K++F +VEDAA GWDG DP+R
Sbjct:   55 DISVALGNSGDLQIELIVQHNDAKSVYRDFLEAGRVGVHHIALMPEDYTSTCERYRSSGHKPAFELSLGGAPVVYFDALETIGHYIELWDNSDVFKEMFLVVEDAAKGWDGKDPIR 170
[Close]
BLAST of mRNA_M-pyrifera_M_contig118205.3773.1 vs. uniprot
Match: A0A2E8NJ39_9GAMM (Glyoxalase n=2 Tax=Gammaproteobacteria bacterium TaxID=1913989 RepID=A0A2E8NJ39_9GAMM)

HSP 1 Score: 155 bits (392), Expect = 5.380e-46
Identity = 70/120 (58.33%), Postives = 83/120 (69.17%), Query Frame = 1 
Query:    1 DVTLALGNSGALQIELIYQNNDEPSVYKEFLDAGREGVHHFGMMPVDYAATCAQYRGLGHEAAFVCDIGGAELTYFDTVSSVGHFIELWDNNDIYKDLFSLVEDAAVGWDGSDPVRPGPL 360
            DV+LA+GNSG +QIELIY  ND  SVYKEFLDAGR GVHH G+MP +Y   C  Y  +G + AF C I G  L YFDTV + GHF ELW+ +D + D  + V  A+VGWDGSDPVR   L
Sbjct:   55 DVSLAVGNSGDVQIELIYCENDAASVYKEFLDAGRVGVHHVGLMPENYLEACQAYESMGFDRAFECKISGTSLVYFDTVQATGHFTELWERSDAFIDFMNFVRAASVGWDGSDPVRTAAL 174
[Close]
BLAST of mRNA_M-pyrifera_M_contig118205.3773.1 vs. uniprot
Match: UPI001488D533 (VOC family protein n=1 Tax=Ruegeria sp. HKCCD8929 TaxID=2683006 RepID=UPI001488D533)

HSP 1 Score: 155 bits (393), Expect = 8.790e-46
Identity = 68/117 (58.12%), Postives = 90/117 (76.92%), Query Frame = 1 
Query:    1 DVTLALGNSGALQIELIYQNNDEPSVYK-EFLDAGREGVHHFGMMPVDYAATCAQYRGLGHEAAFVCDIGGAELTYFDTVSSVGHFIELWDNNDIYKDLFSLVEDAAVGWDGSDPVR 348
            DVT+ALGN+GA+QIEL +Q+ND PSV+K E+ DAGR G+HHFG +P DY A    +   G+E AF CDIGG+ L YFD ++ +GHF+E W+N+ +Y+D+F   E+AA GWDGSDPVR
Sbjct:   83 DVTIALGNTGAVQIELAFQHNDAPSVWKKEWSDAGRRGIHHFGFIPEDYPANFQSFVDRGYEPAFECDIGGSPLCYFDFLNELGHFVEFWENSPLYRDIFRTTEEAARGWDGSDPVR 199
[Close]
BLAST of mRNA_M-pyrifera_M_contig118205.3773.1 vs. uniprot
Match: A0A3D3T3W2_9GAMM (Glyoxalase n=1 Tax=Porticoccaceae bacterium TaxID=2026782 RepID=A0A3D3T3W2_9GAMM)

HSP 1 Score: 152 bits (384), Expect = 8.810e-45
Identity = 67/119 (56.30%), Postives = 87/119 (73.11%), Query Frame = 1 
Query:    1 DVTLALGNSGALQIELIYQNNDEPSVYKEFLDAGREGVHHFGMMPVDYAATCAQYRGLGHEAAFVCDIGGAELTYFDTVSSVGHFIELWDNNDIYKDLFSLVEDAAVGWDGSDPVRPGP 357
            D+++ALGNSG LQIELI Q+N   SVY++F  AGR GVHH G+MP DY A   +Y   G + AF   +GGA   YFD + +VGH+IELWDNN ++KD+F ++E+AA GWDG DP+RP P
Sbjct:   55 DISVALGNSGNLQIELIIQHNAVDSVYRDFFAAGRVGVHHVGLMPEDYEAAYQRYIETGQKPAFELTLGGAPAVYFDALDTVGHYIELWDNNTLFKDMFLMIEEAAKGWDGRDPIRPMP 173
[Close]
BLAST of mRNA_M-pyrifera_M_contig118205.3773.1 vs. uniprot
Match: A0A1Z9TLV7_9PROT (Uncharacterized protein n=1 Tax=Proteobacteria bacterium TMED261 TaxID=1986846 RepID=A0A1Z9TLV7_9PROT)

HSP 1 Score: 143 bits (361), Expect = 2.730e-41
Identity = 66/120 (55.00%), Postives = 77/120 (64.17%), Query Frame = 1 
Query:    1 DVTLALGNSGALQIELIYQNNDEPSVYKEFLDAGREGVHHFGMMPVDYAATCAQYRGLGHEAAFVCDIGGAELTYFDTVSSVGHFIELWDNNDIYKDLFSLVEDAAVGWDGSDPVRPGPL 360
            DV+LA+G SG +QIELI    D PSVYKEFLDAGR GVHH G+MP  Y      Y   G EAAF C I G  L Y+DTV +VGHF ELW  +D + D    V DA++ WDG DPVR   +
Sbjct:   55 DVSLAVGXSGDVQIELIQCETDAPSVYKEFLDAGRVGVHHVGLMPEHYDEARRDYESKGFEAAFECSISGTSLVYYDTVDAVGHFTELWQKSDAFIDFMKFVRDASIDWDGRDPVRDAAI 174
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig118205.3773.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A2D7FU35_9HYPH2.040e-6272.50Glyoxalase n=2 Tax=Hyphomicrobiales TaxID=356 RepI... [more]
A0A1Z9UKT1_9GAMM6.780e-6173.28VOC domain-containing protein n=4 Tax=Bacteria Tax... [more]
A0A836TJN4_9PROT4.400e-5970.00VOC family protein n=1 Tax=Sneathiellales bacteriu... [more]
A0A2E8J3U8_9GAMM9.870e-5464.71Glyoxalase n=1 Tax=Gammaproteobacteria bacterium T... [more]
A0A496WZG5_9GAMM8.790e-5364.17VOC family protein n=1 Tax=Gammaproteobacteria bac... [more]
A0A496WXQ7_9GAMM1.490e-5059.48VOC family protein n=1 Tax=Gammaproteobacteria bac... [more]
A0A2E8NJ39_9GAMM5.380e-4658.33Glyoxalase n=2 Tax=Gammaproteobacteria bacterium T... [more]
UPI001488D5338.790e-4658.12VOC family protein n=1 Tax=Ruegeria sp. HKCCD8929 ... [more]
A0A3D3T3W2_9GAMM8.810e-4556.30Glyoxalase n=1 Tax=Porticoccaceae bacterium TaxID=... [more]
A0A1Z9TLV7_9PROT2.730e-4155.00Uncharacterized protein n=1 Tax=Proteobacteria bac... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig118205contigM-pyrifera_M_contig118205:188..550 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeBacteria
Seed ortholog score102.1
Seed ortholog evalue1.9e-19
Seed eggNOG ortholog402881.Plav_0215
Preferred nameMA20_09990
Hectar predicted targeting categoryother localisation
EggNOG free text desc.Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily
EggNOG OGs1JQ5U@119043,1MWHG@1224,2U1WR@28211,COG0346@1,COG0346@2
COG Functional cat.E
Best tax levelRhodobiaceae
Best eggNOG OGNA|NA|NA
Exons1
Model size363
Cds size363
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815701.7989616-CDS-M-pyrifera_M_contig118205:187..5501622815701.7989616-CDS-M-pyrifera_M_contig118205:187..550Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig118205 188..550 -
1692277529.0696635-CDS-M-pyrifera_M_contig118205:187..5501692277529.0696635-CDS-M-pyrifera_M_contig118205:187..550Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig118205 188..550 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig118205.3773.1prot_M-pyrifera_M_contig118205.3773.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig118205 188..550 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig118205.3773.1

>prot_M-pyrifera_M_contig118205.3773.1 ID=prot_M-pyrifera_M_contig118205.3773.1|Name=mRNA_M-pyrifera_M_contig118205.3773.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=121bp
DVTLALGNSGALQIELIYQNNDEPSVYKEFLDAGREGVHHFGMMPVDYAA
TCAQYRGLGHEAAFVCDIGGAELTYFDTVSSVGHFIELWDNNDIYKDLFS
LVEDAAVGWDGSDPVRPGPL*
back to top

mRNA from alignment at M-pyrifera_M_contig118205:188..550-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig118205.3773.1 ID=mRNA_M-pyrifera_M_contig118205.3773.1|Name=mRNA_M-pyrifera_M_contig118205.3773.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=363bp|location=Sequence derived from alignment at M-pyrifera_M_contig118205:188..550- (Macrocystis pyrifera P11B4 male)
GACGTAACGCTCGCACTCGGCAACAGCGGCGCACTCCAGATCGAACTTAT
CTACCAGAATAACGACGAGCCCTCCGTGTACAAGGAATTCCTCGATGCCG
GCCGCGAAGGCGTTCACCACTTCGGCATGATGCCGGTCGATTACGCGGCC
ACCTGCGCGCAGTACCGCGGACTCGGTCACGAAGCGGCATTTGTTTGCGA
CATCGGCGGCGCGGAACTGACGTACTTCGATACCGTCAGTTCCGTGGGTC
ACTTTATCGAGTTGTGGGACAACAACGATATTTACAAGGATCTTTTCTCG
CTCGTGGAAGACGCGGCGGTCGGCTGGGACGGCAGCGACCCGGTTCGGCC
CGGCCCTTTGTAG
back to top

Coding sequence (CDS) from alignment at M-pyrifera_M_contig118205:188..550-

>mRNA_M-pyrifera_M_contig118205.3773.1 ID=mRNA_M-pyrifera_M_contig118205.3773.1|Name=mRNA_M-pyrifera_M_contig118205.3773.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=726bp|location=Sequence derived from alignment at M-pyrifera_M_contig118205:188..550- (Macrocystis pyrifera P11B4 male)
GACGTAACGCTCGCACTCGGCAACAGCGGCGCACTCCAGATCGAACTTAT
CTACCAGAATAACGACGAGCCCTCCGTGTACAAGGAATTCCTCGATGCCG
GCCGCGAAGGCGTTCACCACTTCGGCATGATGCCGGTCGATTACGCGGCC
ACCTGCGCGCAGTACCGCGGACTCGGTCACGAAGCGGCATTTGTTTGCGA
CATCGGCGGCGCGGAACTGACGTACTTCGATACCGTCAGTTCCGTGGGTC
ACTTTATCGAGTTGTGGGACAACAACGATATTTACAAGGATCTTTTCTCG
CTCGTGGAAGACGCGGCGGTCGGCTGGGACGGCAGCGACCCGGTTCGGCC
CGGCCCTTTGTAGGACGTAACGCTCGCACTCGGCAACAGCGGCGCACTCC
AGATCGAACTTATCTACCAGAATAACGACGAGCCCTCCGTGTACAAGGAA
TTCCTCGATGCCGGCCGCGAAGGCGTTCACCACTTCGGCATGATGCCGGT
CGATTACGCGGCCACCTGCGCGCAGTACCGCGGACTCGGTCACGAAGCGG
CATTTGTTTGCGACATCGGCGGCGCGGAACTGACGTACTTCGATACCGTC
AGTTCCGTGGGTCACTTTATCGAGTTGTGGGACAACAACGATATTTACAA
GGATCTTTTCTCGCTCGTGGAAGACGCGGCGGTCGGCTGGGACGGCAGCG
ACCCGGTTCGGCCCGGCCCTTTGTAG
back to top