mRNA_M-pyrifera_M_contig118200.3771.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig118200.3771.1
Unique NamemRNA_M-pyrifera_M_contig118200.3771.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig118200.3771.1 vs. uniprot
Match: A0A4T0WZZ5_9ASCO (Chromatin modification-related protein n=1 Tax=[Candida] inconspicua TaxID=52247 RepID=A0A4T0WZZ5_9ASCO)

HSP 1 Score: 53.5 bits (127), Expect = 5.410e-7
Identity = 19/48 (39.58%), Postives = 28/48 (58.33%), Query Frame = 1 
Query:    4 MEIEEEQYIACDHPLCQTGWYRWRDVGLMSADSVPEGKWYCPDCRASP 147
             ++   + +ACD+P C+  W+ +  VGL     +P G WYCPDCR  P
Sbjct:  242 QQVSYGEMVACDNPTCKYEWFHYDCVGLKE---IPNGVWYCPDCRKDP 286
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BLAST of mRNA_M-pyrifera_M_contig118200.3771.1 vs. uniprot
Match: UPI000711FF53 (hypothetical protein n=1 Tax=Blastocystis sp. subtype 4 TaxID=944170 RepID=UPI000711FF53)

HSP 1 Score: 47.8 bits (112), Expect = 5.240e-5
Identity = 18/39 (46.15%), Postives = 24/39 (61.54%), Query Frame = 1 
Query:   22 QYIACDHPLCQTGWYRWRDVGLMSADSVPEGKWYCPDCR 138
            + I CD+  C   W+    VGL   D++PEG WYCP+CR
Sbjct:  181 EMIGCDNDNCTIKWFHLHCVGL---DTIPEGSWYCPNCR 216
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig118200.3771.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A4T0WZZ5_9ASCO5.410e-739.58Chromatin modification-related protein n=1 Tax=[Ca... [more]
UPI000711FF535.240e-546.15hypothetical protein n=1 Tax=Blastocystis sp. subt... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig118200contigM-pyrifera_M_contig118200:44..190 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Model size147
Cds size144
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815701.7034514-UTR-M-pyrifera_M_contig118200:43..461622815701.7034514-UTR-M-pyrifera_M_contig118200:43..46Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig118200 44..46 +
1692277529.0255775-UTR-M-pyrifera_M_contig118200:43..461692277529.0255775-UTR-M-pyrifera_M_contig118200:43..46Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig118200 44..46 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815701.7142625-CDS-M-pyrifera_M_contig118200:46..1901622815701.7142625-CDS-M-pyrifera_M_contig118200:46..190Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig118200 47..190 +
1692277529.0349944-CDS-M-pyrifera_M_contig118200:46..1901692277529.0349944-CDS-M-pyrifera_M_contig118200:46..190Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig118200 47..190 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig118200.3771.1prot_M-pyrifera_M_contig118200.3771.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig118200 47..190 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig118200.3771.1

>prot_M-pyrifera_M_contig118200.3771.1 ID=prot_M-pyrifera_M_contig118200.3771.1|Name=mRNA_M-pyrifera_M_contig118200.3771.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=48bp
MEIEEEQYIACDHPLCQTGWYRWRDVGLMSADSVPEGKWYCPDCRASP
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mRNA from alignment at M-pyrifera_M_contig118200:44..190+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig118200.3771.1 ID=mRNA_M-pyrifera_M_contig118200.3771.1|Name=mRNA_M-pyrifera_M_contig118200.3771.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=147bp|location=Sequence derived from alignment at M-pyrifera_M_contig118200:44..190+ (Macrocystis pyrifera P11B4 male)
GGTATGGAAATCGAGGAAGAACAATACATTGCCTGTGACCACCCGCTCTG
CCAAACAGGGTGGTATCGATGGAGAGATGTTGGCCTCATGTCTGCGGATT
CGGTGCCAGAAGGCAAGTGGTATTGCCCGGACTGCAGAGCCTCTCCG
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig118200:44..190+

>mRNA_M-pyrifera_M_contig118200.3771.1 ID=mRNA_M-pyrifera_M_contig118200.3771.1|Name=mRNA_M-pyrifera_M_contig118200.3771.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=288bp|location=Sequence derived from alignment at M-pyrifera_M_contig118200:44..190+ (Macrocystis pyrifera P11B4 male)
ATGGAAATCGAGGAAGAACAATACATTGCCTGTGACCACCCGCTCTGCCA
AACAGGGTGGTATCGATGGAGAGATGTTGGCCTCATGTCTGCGGATTCGG
TGCCAGAAGGCAAGTGGTATTGCCCGGACTGCAGAGCCTCTCCGATGGAA
ATCGAGGAAGAACAATACATTGCCTGTGACCACCCGCTCTGCCAAACAGG
GTGGTATCGATGGAGAGATGTTGGCCTCATGTCTGCGGATTCGGTGCCAG
AAGGCAAGTGGTATTGCCCGGACTGCAGAGCCTCTCCG
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