mRNA_M-pyrifera_M_contig118170.3764.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig118170.3764.1
Unique NamemRNA_M-pyrifera_M_contig118170.3764.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig118170.3764.1 vs. uniprot
Match: A0A067CN99_SAPPC (Uncharacterized protein n=1 Tax=Saprolegnia parasitica (strain CBS 223.65) TaxID=695850 RepID=A0A067CN99_SAPPC)

HSP 1 Score: 110 bits (275), Expect = 1.070e-26
Identity = 62/149 (41.61%), Postives = 81/149 (54.36%), Query Frame = 1
Query:    1 MQQVPVFRPTAEEFAEGFTAYVKKI-EPQCSAVGLARVIPPAGWAGRRLSSQLGSAADQLDVEIPKPIQQKVAGGKGVFQTMNIIEPAQKLAAFRKAALAFGEKRGECGTDKEVERKFWKSVR--FEPPTYGADFEGSLFEEDLQ--PW 432
            M+  PVFRPT  EFA  F  Y++ + EPQC A+GL +++PPA W  R       S  D +  +I  P+ Q VAG KGVF    +   +  L AF+  A A          D  +ER FWK +R   EPP YGAD  GSLF++D +  PW
Sbjct:    1 MEDAPVFRPTPSEFAS-FPRYIRTVVEPQCQAIGLCKIVPPAAWVAR------ASGYDDVAFDIHTPLSQHVAGKKGVFNVDLVERKSMTLDAFKALAAAKDTIAHLLDDDDAIERTFWKGLRPTMEPPVYGADLVGSLFQDDAKSNPW 142          
BLAST of mRNA_M-pyrifera_M_contig118170.3764.1 vs. uniprot
Match: UPI001899A93C (lysine-specific demethylase 4A n=1 Tax=Nematolebias whitei TaxID=451745 RepID=UPI001899A93C)

HSP 1 Score: 105 bits (263), Expect = 2.180e-24
Identity = 58/142 (40.85%), Postives = 82/142 (57.75%), Query Frame = 1
Query:   10 VPVFRPTAEEFAEGFTAYVKKIEPQ-CSAVGLARVIPPAGWAGRRLSSQLGSAADQLDVEIPKPIQQKVAGGKGVFQTMNIIEPAQKLAAFRKAALAFGEKRGECGTDKEVERKFWKSVRFEPPTYGADFEGSLFEEDLQPW 432
            +  F PTAEEF + F  YV  +E +     GLA+++PP GW  R      GS  D  D+ IP PIQQ V+G  G+F   NI + +  +  FR+ A ++   R      +E+ERK+WK+V F PP YGAD  GSL++ D++ W
Sbjct:   15 IMTFYPTAEEFKD-FNRYVAYMESKGAHKAGLAKIVPPKGWKPR------GSYDDIDDLVIPAPIQQVVSGQSGLFTQYNIQKKSMTVREFRRIANSYKFYRPHYDDFEELERKYWKNVTFNPPIYGADVNGSLYDPDIKEW 149          
BLAST of mRNA_M-pyrifera_M_contig118170.3764.1 vs. uniprot
Match: A0A1V9ZIF9_9STRA (Uncharacterized protein n=1 Tax=Achlya hypogyna TaxID=1202772 RepID=A0A1V9ZIF9_9STRA)

HSP 1 Score: 105 bits (263), Expect = 5.240e-24
Identity = 62/144 (43.06%), Postives = 82/144 (56.94%), Query Frame = 1
Query:   13 PVFRPTAEEFAEGFTAYVKKI-EPQCSAVGLARVIPPAGWAGRRLSSQLGSAADQLDVEIPKPIQQKVAGGKGVFQTMNIIEPAQKLAAFRKAALAFGEKRGECGTDKEVERKFWKSVR--FEPPTYGADFEGSLFE-EDLQPW 432
            PVFRPT +EFA  F  YV+ + EPQC ++GL +V+PPAGW+ R        + D +  EI  P+ Q VAG KGVF    +   +   AAF+  ALA  +   +     E ER FWK +R   +PP YGAD  GSLF+  +  PW
Sbjct:    4 PVFRPTPDEFAS-FPRYVRTVVEPQCKSIGLCKVVPPAGWSAR------SGSYDDVVFEIHTPLSQHVAGKKGVFNVDLVERKSMSAAAFK--ALATAKDLADPLDVNEAERAFWKGLRPTMDPPVYGADLVGSLFDANEPNPW 138          
BLAST of mRNA_M-pyrifera_M_contig118170.3764.1 vs. uniprot
Match: T0QUH7_SAPDV (Uncharacterized protein n=1 Tax=Saprolegnia diclina (strain VS20) TaxID=1156394 RepID=T0QUH7_SAPDV)

HSP 1 Score: 105 bits (262), Expect = 8.390e-24
Identity = 61/149 (40.94%), Postives = 80/149 (53.69%), Query Frame = 1
Query:    1 MQQVPVFRPTAEEFAEGFTAYVKKI-EPQCSAVGLARVIPPAGWAGRRLSSQLGSAADQLDVEIPKPIQQKVAGGKGVFQTMNIIEPAQKLAAFRKAALAFGEKRGECGTDKEVERKFWKSVR--FEPPTYGADFEGSLFEEDL--QPW 432
            M   PVFRPT  EFA  F  Y++ + EPQC  +GL +++PP GW  R       S  D +  +I  P+ Q VAG KGVF    +   +  L AF+  A+A  +       D  +ER FWK +R   EPP YGAD  GSLF++D    PW
Sbjct:   19 MVDAPVFRPTPSEFAS-FPRYIRTVVEPQCQTIGLCKIVPPLGWVAR------ASGYDNVAFDIHTPLSQHVAGKKGVFNVDLVERKSMTLDAFKALAVA-KDTVTHLLDDDAIERAFWKGLRPTMEPPVYGADLVGSLFQDDALSNPW 159          
BLAST of mRNA_M-pyrifera_M_contig118170.3764.1 vs. uniprot
Match: UPI00148F58E3 (lysine-specific demethylase 4A isoform X1 n=4 Tax=Notolabrus celidotus TaxID=1203425 RepID=UPI00148F58E3)

HSP 1 Score: 104 bits (259), Expect = 3.460e-23
Identity = 60/142 (42.25%), Postives = 80/142 (56.34%), Query Frame = 1
Query:   10 VPVFRPTAEEFAEGFTAYVKKIEPQ-CSAVGLARVIPPAGWAGRRLSSQLGSAADQLDVEIPKPIQQKVAGGKGVFQTMNIIEPAQKLAAFRKAALAFGEKRGECGTDKEVERKFWKSVRFEPPTYGADFEGSLFEEDLQPW 432
            +  F PTAEEF + FT Y+  IE Q     GLA+++PP  W  R      GS  D  D+ IP PIQQ V G  G+FQ  NI + A  +  FRK A +           +E+ERK+WK+V F PP YGAD  GSL++ +++ W
Sbjct:   15 IMTFYPTAEEF-KNFTRYIAYIESQGAHKAGLAKIVPPKEWKPR------GSYDDIDDLVIPAPIQQVVTGQSGLFQQYNIQKKAMTVREFRKIANSDKFCSPHYDDFEELERKYWKNVTFNPPIYGADVNGSLYDPEVKEW 149          
BLAST of mRNA_M-pyrifera_M_contig118170.3764.1 vs. uniprot
Match: A0A0S7JPS2_9TELE (KDM4A n=1 Tax=Poeciliopsis prolifica TaxID=188132 RepID=A0A0S7JPS2_9TELE)

HSP 1 Score: 100 bits (248), Expect = 4.440e-23
Identity = 57/142 (40.14%), Postives = 79/142 (55.63%), Query Frame = 1
Query:   10 VPVFRPTAEEFAEGFTAYVKKIEPQ-CSAVGLARVIPPAGWAGRRLSSQLGSAADQLDVEIPKPIQQKVAGGKGVFQTMNIIEPAQKLAAFRKAALAFGEKRGECGTDKEVERKFWKSVRFEPPTYGADFEGSLFEEDLQPW 432
            +  F PTAEEF + F+ Y+  IE +     GLA+++PP  W  R      GS  D  D+ IP PIQQ V G  G+F   NI + A  +  FRK A +           +E+ERK+WK++ F PP YGAD  GSL++ D++ W
Sbjct:   15 IMTFYPTAEEF-KNFSRYIAYIESKGAHRAGLAKIVPPKEWRPR------GSYEDIDDLVIPAPIQQVVTGQSGLFTQYNIQKRAMTVKEFRKIANSDKFCSPHYDDFEELERKYWKNLTFNPPLYGADVNGSLYDPDIEEW 149          
BLAST of mRNA_M-pyrifera_M_contig118170.3764.1 vs. uniprot
Match: A0A7S0MTN4_9CHLO (Hypothetical protein n=1 Tax=Pyramimonas obovata TaxID=1411642 RepID=A0A7S0MTN4_9CHLO)

HSP 1 Score: 103 bits (257), Expect = 6.240e-23
Identity = 54/143 (37.76%), Postives = 79/143 (55.24%), Query Frame = 1
Query:    7 QVPVFRPTAEEFAEGFTAYVKKIEPQCSAVGLARVIPPAGWAGRRLSSQLGSAADQLDVEIPKPIQQKVAGGKGVFQTMNII-EPAQKLAAFRKAALAFGEKRGECGTDKEVERKFWKSVRFEPPTYGADFEGSLFEEDLQPW 432
            +VPVF P+ ++    F  YV+ IEPQ + VG+ +++PP  W  R++        D +D  IPKPI+Q   G KG+F+T+ +  +P      FR  A +            E+ER+FWK + + PP YGAD EGSLF+E    W
Sbjct:    7 EVPVFYPSMDDMRGSFERYVESIEPQFAHVGICKIVPPPAWTPRKVGY------DDIDGFIPKPIRQHATGRKGLFRTLMLEGKPMSVRDEFRPMAESKENLPKTPDDMAELEREFWKRITYTPPLYGADVEGSLFDEKCNGW 143          
BLAST of mRNA_M-pyrifera_M_contig118170.3764.1 vs. uniprot
Match: UPI001BD1CAD1 (lysine-specific demethylase 4A isoform X1 n=4 Tax=Cheilinus undulatus TaxID=241271 RepID=UPI001BD1CAD1)

HSP 1 Score: 103 bits (257), Expect = 6.420e-23
Identity = 60/142 (42.25%), Postives = 78/142 (54.93%), Query Frame = 1
Query:   10 VPVFRPTAEEFAEGFTAYVKKIEPQ-CSAVGLARVIPPAGWAGRRLSSQLGSAADQLDVEIPKPIQQKVAGGKGVFQTMNIIEPAQKLAAFRKAALAFGEKRGECGTDKEVERKFWKSVRFEPPTYGADFEGSLFEEDLQPW 432
            +  F PTAEEF + FT Y+  IE Q     GLA+++PP  W  R      GS  D  D+ IP PIQQ V G  G+FQ  NI      +  FRK A +           +E+ERK+WK+V F PP YGAD  GSL++ D++ W
Sbjct:   15 IMTFYPTAEEF-KNFTRYIAYIESQGAHKAGLAKIVPPKEWKPR------GSYDDIDDLVIPAPIQQVVTGQSGLFQQYNIQRKPMTVREFRKIANSDKFCSPHYDDFEELERKYWKNVTFNPPIYGADVNGSLYDPDVKEW 149          
BLAST of mRNA_M-pyrifera_M_contig118170.3764.1 vs. uniprot
Match: A0A3Q3FAS8_9LABR (Lysine (K)-specific demethylase 4A, genome duplicate b n=1 Tax=Labrus bergylta TaxID=56723 RepID=A0A3Q3FAS8_9LABR)

HSP 1 Score: 101 bits (252), Expect = 9.590e-23
Identity = 59/142 (41.55%), Postives = 78/142 (54.93%), Query Frame = 1
Query:   10 VPVFRPTAEEFAEGFTAYVKKIEPQ-CSAVGLARVIPPAGWAGRRLSSQLGSAADQLDVEIPKPIQQKVAGGKGVFQTMNIIEPAQKLAAFRKAALAFGEKRGECGTDKEVERKFWKSVRFEPPTYGADFEGSLFEEDLQPW 432
            +  F PTAEEF + FT Y+  IE Q     GLA+++PP  W  R       S  D  D+ IP PIQQ V G  G+FQ  NI   +  L  FRK A +           +E+ERK+WK+V F PP YGAD  GSL++ +++ W
Sbjct:   32 IMTFYPTAEEF-KNFTRYIAYIESQGAHKAGLAKIVPPKEWKPR------SSYDDIDDLMIPAPIQQVVTGQSGLFQQYNIQRKSMTLREFRKIANSDKFCSPHYDDFEELERKYWKNVTFNPPIYGADVNGSLYDPEVKEW 166          
BLAST of mRNA_M-pyrifera_M_contig118170.3764.1 vs. uniprot
Match: A0A3Q3FCN9_9LABR (Lysine (K)-specific demethylase 4A, genome duplicate b n=1 Tax=Labrus bergylta TaxID=56723 RepID=A0A3Q3FCN9_9LABR)

HSP 1 Score: 96.3 bits (238), Expect = 9.990e-23
Identity = 58/136 (42.65%), Postives = 74/136 (54.41%), Query Frame = 1
Query:   10 VPVFRPTAEEFAEGFTAYVKKIEPQ-CSAVGLARVIPPAGWAGRRLSSQLGSAADQLDVEIPKPIQQKVAGGKGVFQTMNIIEPAQKLAAFRKAALAFGEKRGECGTDKEVERKFWKSVRFEPPTYGADFEGSLFE 414
            +  F PTAEEF + FT Y+  IE Q     GLA+++PP  W  R       S  D  D+ IP PIQQ V G  G+FQ  NI   +  L  FRK A +           +E+ERK+WK+V F PP YGAD  GSL++
Sbjct:   10 IMTFYPTAEEF-KNFTRYIAYIESQGAHKAGLAKIVPPKEWKPR------SSYDDIDDLMIPAPIQQVVTGQSGLFQQYNIQRKSMTLREFRKIANSDKFCSPHYDDFEELERKYWKNVTFNPPIYGADVNGSLYD 138          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig118170.3764.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A067CN99_SAPPC1.070e-2641.61Uncharacterized protein n=1 Tax=Saprolegnia parasi... [more]
UPI001899A93C2.180e-2440.85lysine-specific demethylase 4A n=1 Tax=Nematolebia... [more]
A0A1V9ZIF9_9STRA5.240e-2443.06Uncharacterized protein n=1 Tax=Achlya hypogyna Ta... [more]
T0QUH7_SAPDV8.390e-2440.94Uncharacterized protein n=1 Tax=Saprolegnia diclin... [more]
UPI00148F58E33.460e-2342.25lysine-specific demethylase 4A isoform X1 n=4 Tax=... [more]
A0A0S7JPS2_9TELE4.440e-2340.14KDM4A n=1 Tax=Poeciliopsis prolifica TaxID=188132 ... [more]
A0A7S0MTN4_9CHLO6.240e-2337.76Hypothetical protein n=1 Tax=Pyramimonas obovata T... [more]
UPI001BD1CAD16.420e-2342.25lysine-specific demethylase 4A isoform X1 n=4 Tax=... [more]
A0A3Q3FAS8_9LABR9.590e-2341.55Lysine (K)-specific demethylase 4A, genome duplica... [more]
A0A3Q3FCN9_9LABR9.990e-2342.65Lysine (K)-specific demethylase 4A, genome duplica... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig118170contigM-pyrifera_M_contig118170:94..525 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeViridiplantae
Seed ortholog score118.6
Seed ortholog evalue2.4e-24
Seed eggNOG ortholog248742.XP_005644028.1
KEGG koko:K06709
Hectar predicted targeting categoryother localisation
EggNOG free text desc.A domain family that is part of the cupin metalloenzyme superfamily.
EggNOG OGs34JKY@3041,388MX@33090,COG5141@1,KOG0958@2759
COG Functional cat.L
Best tax levelChlorophyta
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000,ko03036
Exons1
Model size432
Cds size432
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815701.1817095-CDS-M-pyrifera_M_contig118170:93..5251622815701.1817095-CDS-M-pyrifera_M_contig118170:93..525Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig118170 94..525 +
1692277528.6964695-CDS-M-pyrifera_M_contig118170:93..5251692277528.6964695-CDS-M-pyrifera_M_contig118170:93..525Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig118170 94..525 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig118170.3764.1prot_M-pyrifera_M_contig118170.3764.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig118170 94..525 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig118170.3764.1

>prot_M-pyrifera_M_contig118170.3764.1 ID=prot_M-pyrifera_M_contig118170.3764.1|Name=mRNA_M-pyrifera_M_contig118170.3764.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=144bp
MQQVPVFRPTAEEFAEGFTAYVKKIEPQCSAVGLARVIPPAGWAGRRLSS
QLGSAADQLDVEIPKPIQQKVAGGKGVFQTMNIIEPAQKLAAFRKAALAF
GEKRGECGTDKEVERKFWKSVRFEPPTYGADFEGSLFEEDLQPW
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mRNA from alignment at M-pyrifera_M_contig118170:94..525+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig118170.3764.1 ID=mRNA_M-pyrifera_M_contig118170.3764.1|Name=mRNA_M-pyrifera_M_contig118170.3764.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=432bp|location=Sequence derived from alignment at M-pyrifera_M_contig118170:94..525+ (Macrocystis pyrifera P11B4 male)
ATGCAGCAGGTGCCTGTGTTCCGGCCGACGGCGGAGGAGTTTGCGGAGGG GTTTACGGCGTATGTGAAGAAGATAGAGCCGCAGTGCAGCGCCGTGGGCC TGGCGCGCGTGATCCCTCCCGCGGGCTGGGCCGGCCGCCGCCTCAGCTCA CAGCTGGGCTCCGCCGCAGACCAGCTGGACGTGGAGATCCCCAAGCCCAT CCAGCAGAAGGTGGCCGGCGGCAAGGGCGTCTTCCAGACGATGAACATCA TAGAGCCCGCGCAGAAGCTGGCGGCCTTCCGCAAGGCTGCGCTCGCGTTC GGCGAGAAACGAGGCGAGTGCGGCACCGACAAGGAGGTGGAGCGCAAGTT CTGGAAGTCAGTGCGCTTCGAGCCGCCGACCTACGGCGCAGACTTCGAGG GCTCGCTCTTCGAGGAGGACCTGCAGCCGTGG
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig118170:94..525+

>mRNA_M-pyrifera_M_contig118170.3764.1 ID=mRNA_M-pyrifera_M_contig118170.3764.1|Name=mRNA_M-pyrifera_M_contig118170.3764.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=864bp|location=Sequence derived from alignment at M-pyrifera_M_contig118170:94..525+ (Macrocystis pyrifera P11B4 male)
ATGCAGCAGGTGCCTGTGTTCCGGCCGACGGCGGAGGAGTTTGCGGAGGG
GTTTACGGCGTATGTGAAGAAGATAGAGCCGCAGTGCAGCGCCGTGGGCC
TGGCGCGCGTGATCCCTCCCGCGGGCTGGGCCGGCCGCCGCCTCAGCTCA
CAGCTGGGCTCCGCCGCAGACCAGCTGGACGTGGAGATCCCCAAGCCCAT
CCAGCAGAAGGTGGCCGGCGGCAAGGGCGTCTTCCAGACGATGAACATCA
TAGAGCCCGCGCAGAAGCTGGCGGCCTTCCGCAAGGCTGCGCTCGCGTTC
GGCGAGAAACGAGGCGAGTGCGGCACCGACAAGGAGGTGGAGCGCAAGTT
CTGGAAGTCAGTGCGCTTCGAGCCGCCGACCTACGGCGCAGACTTCGAGG
GCTCGCTCTTCGAGGAGGACCTGCAGCCGTGGATGCAGCAGGTGCCTGTG
TTCCGGCCGACGGCGGAGGAGTTTGCGGAGGGGTTTACGGCGTATGTGAA
GAAGATAGAGCCGCAGTGCAGCGCCGTGGGCCTGGCGCGCGTGATCCCTC
CCGCGGGCTGGGCCGGCCGCCGCCTCAGCTCACAGCTGGGCTCCGCCGCA
GACCAGCTGGACGTGGAGATCCCCAAGCCCATCCAGCAGAAGGTGGCCGG
CGGCAAGGGCGTCTTCCAGACGATGAACATCATAGAGCCCGCGCAGAAGC
TGGCGGCCTTCCGCAAGGCTGCGCTCGCGTTCGGCGAGAAACGAGGCGAG
TGCGGCACCGACAAGGAGGTGGAGCGCAAGTTCTGGAAGTCAGTGCGCTT
CGAGCCGCCGACCTACGGCGCAGACTTCGAGGGCTCGCTCTTCGAGGAGG
ACCTGCAGCCGTGG
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