mRNA_M-pyrifera_M_contig118165.3763.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig118165.3763.1
Unique NamemRNA_M-pyrifera_M_contig118165.3763.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig118165.3763.1 vs. uniprot
Match: A0A388L357_CHABU (Uncharacterized protein n=1 Tax=Chara braunii TaxID=69332 RepID=A0A388L357_CHABU)

HSP 1 Score: 71.2 bits (173), Expect = 6.100e-13
Identity = 34/63 (53.97%), Postives = 43/63 (68.25%), Query Frame = 1 
Query:    1 RQIMNSGSAFEQDYLARVLTSSGEEVEEDCLVDSWVTTGRSAFLDFTAGPFKWGPLVAGEGVR 189
            RQI+N  S + +D LA+ +      +  DCLVDSWV+  R AF+D TAGPF WGP+V GEGVR
Sbjct:  396 RQILNQNSDYSKD-LAKHVGRRDSGLHADCLVDSWVSLERVAFMDLTAGPFFWGPMVKGEGVR 457
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BLAST of mRNA_M-pyrifera_M_contig118165.3763.1 vs. uniprot
Match: L8H8C0_ACACA (Uncharacterized protein n=1 Tax=Acanthamoeba castellanii str. Neff TaxID=1257118 RepID=L8H8C0_ACACA)

HSP 1 Score: 70.1 bits (170), Expect = 1.560e-12
Identity = 33/61 (54.10%), Postives = 43/61 (70.49%), Query Frame = 1 
Query:    7 IMNSGSAFEQDYLARVLTSSGEEVEEDCLVDSWVTTGRSAFLDFTAGPFKWGPLVAGEGVR 189
            I  SGS  + +YLA +      + +EDCLVD+WV   R A+LD +AGPFKWGP+VAG+GVR
Sbjct:  423 IAASGSKAQVEYLASIKEG---KAQEDCLVDNWVGHARYAWLDLSAGPFKWGPVVAGQGVR 480
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BLAST of mRNA_M-pyrifera_M_contig118165.3763.1 vs. uniprot
Match: L1JNB8_GUITC (Uncharacterized protein n=2 Tax=Guillardia theta TaxID=55529 RepID=L1JNB8_GUITC)

HSP 1 Score: 69.3 bits (168), Expect = 2.900e-12
Identity = 28/62 (45.16%), Postives = 47/62 (75.81%), Query Frame = 1 
Query:    4 QIMNSGSAFEQDYLARVLTSSGEEVEEDCLVDSWVTTGRSAFLDFTAGPFKWGPLVAGEGVR 189
            +++ S S  +++Y+  V  +  + V+EDCLVD+W++  R AF+DF++GPF+WGP+V G+GVR
Sbjct:  436 RLLQSRSEDDREYIRAV--AQDKHVKEDCLVDNWISRHRFAFIDFSSGPFEWGPIVGGKGVR 495
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BLAST of mRNA_M-pyrifera_M_contig118165.3763.1 vs. uniprot
Match: A0A7S0QY49_9CRYP (Hypothetical protein (Fragment) n=1 Tax=Cryptomonas curvata TaxID=233186 RepID=A0A7S0QY49_9CRYP)

HSP 1 Score: 67.8 bits (164), Expect = 3.770e-12
Identity = 30/63 (47.62%), Postives = 43/63 (68.25%), Query Frame = 1 
Query:    1 RQIMNSGSAFEQDYLARVLTSSGEEVEEDCLVDSWVTTGRSAFLDFTAGPFKWGPLVAGEGVR 189
            R +    S+ E  Y+ R +    +  +EDCLVD+W+  GR AF+DF+AGPF+WGP+V G+GVR
Sbjct:  110 RMLQAKKSSPEVVYVRRAIED--KHSKEDCLVDTWIGDGRFAFIDFSAGPFEWGPIVGGKGVR 170
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BLAST of mRNA_M-pyrifera_M_contig118165.3763.1 vs. uniprot
Match: A0A151ZJV5_9MYCE (Uncharacterized protein n=1 Tax=Tieghemostelium lacteum TaxID=361077 RepID=A0A151ZJV5_9MYCE)

HSP 1 Score: 65.5 bits (158), Expect = 6.600e-11
Identity = 28/57 (49.12%), Postives = 40/57 (70.18%), Query Frame = 1 
Query:   19 GSAFEQDYLARVLTSSGEEVEEDCLVDSWVTTGRSAFLDFTAGPFKWGPLVAGEGVR 189
            G+ +EQ YL     +   E++E+CLVDSWV+  R AF+D TAGPF+WGP + G G++
Sbjct:  384 GTVYEQMYL---FNAKEFEIKENCLVDSWVSHKRFAFIDLTAGPFEWGPSIGGSGLK 437
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BLAST of mRNA_M-pyrifera_M_contig118165.3763.1 vs. uniprot
Match: A0A7S0XV86_HEMAN (Hypothetical protein (Fragment) n=2 Tax=Hemiselmis andersenii TaxID=464988 RepID=A0A7S0XV86_HEMAN)

HSP 1 Score: 65.1 bits (157), Expect = 8.600e-11
Identity = 28/62 (45.16%), Postives = 42/62 (67.74%), Query Frame = 1 
Query:    4 QIMNSGSAFEQDYLARVLTSSGEEVEEDCLVDSWVTTGRSAFLDFTAGPFKWGPLVAGEGVR 189
            +++ S S  +++Y+   +    E  + DCLVD WV  GR A +DF+AGPF+WGP+V G+GVR
Sbjct:  276 RLLQSKSKEDKEYVRAAVQD--EHAQPDCLVDLWVGNGRWAMIDFSAGPFEWGPVVGGKGVR 335
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BLAST of mRNA_M-pyrifera_M_contig118165.3763.1 vs. uniprot
Match: D3BMC8_POLPP (Uncharacterized protein n=1 Tax=Polysphondylium pallidum (strain ATCC 26659 / Pp 5 / PN500) TaxID=670386 RepID=D3BMC8_POLPP)

HSP 1 Score: 64.3 bits (155), Expect = 1.680e-10
Identity = 26/63 (41.27%), Postives = 42/63 (66.67%), Query Frame = 1 
Query:    1 RQIMNSGSAFEQDYLARVLTSSGEEVEEDCLVDSWVTTGRSAFLDFTAGPFKWGPLVAGEGVR 189
            + + N G+ +E+ Y+    T+    + E+CLVDSW++  R AF+D TAGPF+WGP + G G++
Sbjct:  390 QHLYNQGTWYEKFYIQ---TAYDNPITENCLVDSWISHKRFAFIDLTAGPFEWGPTIGGNGLK 449
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BLAST of mRNA_M-pyrifera_M_contig118165.3763.1 vs. uniprot
Match: A0A7S0N718_9CHLO (Hypothetical protein (Fragment) n=1 Tax=Pyramimonas obovata TaxID=1411642 RepID=A0A7S0N718_9CHLO)

HSP 1 Score: 63.5 bits (153), Expect = 3.140e-10
Identity = 25/50 (50.00%), Postives = 34/50 (68.00%), Query Frame = 1 
Query:   40 YLARVLTSSGEEVEEDCLVDSWVTTGRSAFLDFTAGPFKWGPLVAGEGVR 189
            Y+ R++ +    V E CLVD+WV  GR  + D +AGPF+WGPLV G G+R
Sbjct:  430 YVKRIVQAEAAGVHESCLVDTWVGAGRYLWADLSAGPFQWGPLVGGSGLR 479
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BLAST of mRNA_M-pyrifera_M_contig118165.3763.1 vs. uniprot
Match: UPI000644C700 (hypothetical protein n=1 Tax=Acytostelium subglobosum LB1 TaxID=1410327 RepID=UPI000644C700)

HSP 1 Score: 63.2 bits (152), Expect = 4.300e-10
Identity = 26/63 (41.27%), Postives = 43/63 (68.25%), Query Frame = 1 
Query:    1 RQIMNSGSAFEQDYLARVLTSSGEEVEEDCLVDSWVTTGRSAFLDFTAGPFKWGPLVAGEGVR 189
            + + ++G+ FE+ Y+    ++    V+E+CLVDSW++  R AF+D TAGPF WGP + G G++
Sbjct:  379 QNLYDNGNWFEKFYIQ---SAHNHWVQENCLVDSWISHKRFAFVDLTAGPFSWGPTIGGNGLK 438
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BLAST of mRNA_M-pyrifera_M_contig118165.3763.1 vs. uniprot
Match: A0A1Y1HRA5_KLENI (Uncharacterized protein n=1 Tax=Klebsormidium nitens TaxID=105231 RepID=A0A1Y1HRA5_KLENI)

HSP 1 Score: 62.8 bits (151), Expect = 5.890e-10
Identity = 25/50 (50.00%), Postives = 35/50 (70.00%), Query Frame = 1 
Query:   40 YLARVLTSSGEEVEEDCLVDSWVTTGRSAFLDFTAGPFKWGPLVAGEGVR 189
            YL + L   G++ + D LVD W+  GR A++D TAGPF +GP+V GEG+R
Sbjct:  371 YLRKALERGGKKTQADALVDVWIGNGRFAWIDLTAGPFSYGPVVGGEGLR 420
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig118165.3763.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 17
Match NameE-valueIdentityDescription
A0A388L357_CHABU6.100e-1353.97Uncharacterized protein n=1 Tax=Chara braunii TaxI... [more]
L8H8C0_ACACA1.560e-1254.10Uncharacterized protein n=1 Tax=Acanthamoeba caste... [more]
L1JNB8_GUITC2.900e-1245.16Uncharacterized protein n=2 Tax=Guillardia theta T... [more]
A0A7S0QY49_9CRYP3.770e-1247.62Hypothetical protein (Fragment) n=1 Tax=Cryptomona... [more]
A0A151ZJV5_9MYCE6.600e-1149.12Uncharacterized protein n=1 Tax=Tieghemostelium la... [more]
A0A7S0XV86_HEMAN8.600e-1145.16Hypothetical protein (Fragment) n=2 Tax=Hemiselmis... [more]
D3BMC8_POLPP1.680e-1041.27Uncharacterized protein n=1 Tax=Polysphondylium pa... [more]
A0A7S0N718_9CHLO3.140e-1050.00Hypothetical protein (Fragment) n=1 Tax=Pyramimona... [more]
UPI000644C7004.300e-1041.27hypothetical protein n=1 Tax=Acytostelium subglobo... [more]
A0A1Y1HRA5_KLENI5.890e-1050.00Uncharacterized protein n=1 Tax=Klebsormidium nite... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig118165contigM-pyrifera_M_contig118165:357..545 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score67.0
Seed ortholog evalue3.4e-09
Seed eggNOG ortholog55529.EKX49685
Hectar predicted targeting categoryother localisation
EggNOG OGs28I8K@1,2QQIX@2759
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons1
Model size189
Cds size180
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815701.1348085-CDS-M-pyrifera_M_contig118165:356..5361622815701.1348085-CDS-M-pyrifera_M_contig118165:356..536Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig118165 357..536 -
1692277528.6675162-CDS-M-pyrifera_M_contig118165:356..5361692277528.6675162-CDS-M-pyrifera_M_contig118165:356..536Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig118165 357..536 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815701.1450126-UTR-M-pyrifera_M_contig118165:536..5451622815701.1450126-UTR-M-pyrifera_M_contig118165:536..545Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig118165 537..545 -
1692277528.6781232-UTR-M-pyrifera_M_contig118165:536..5451692277528.6781232-UTR-M-pyrifera_M_contig118165:536..545Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig118165 537..545 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig118165.3763.1prot_M-pyrifera_M_contig118165.3763.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig118165 357..536 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig118165.3763.1

>prot_M-pyrifera_M_contig118165.3763.1 ID=prot_M-pyrifera_M_contig118165.3763.1|Name=mRNA_M-pyrifera_M_contig118165.3763.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=60bp
MNSGSAFEQDYLARVLTSSGEEVEEDCLVDSWVTTGRSAFLDFTAGPFKW
GPLVAGEGVR
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mRNA from alignment at M-pyrifera_M_contig118165:357..545-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig118165.3763.1 ID=mRNA_M-pyrifera_M_contig118165.3763.1|Name=mRNA_M-pyrifera_M_contig118165.3763.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=189bp|location=Sequence derived from alignment at M-pyrifera_M_contig118165:357..545- (Macrocystis pyrifera P11B4 male)
CGACAGATCATGAACTCTGGCAGCGCATTCGAGCAGGACTACCTCGCGCG
CGTGCTGACGTCGTCTGGAGAGGAGGTGGAGGAGGACTGCCTCGTCGACA
GCTGGGTCACCACTGGCCGCTCTGCCTTCCTCGACTTCACCGCTGGCCCC
TTCAAGTGGGGACCTCTCGTGGCAGGAGAAGGAGTACGC
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig118165:357..545-

>mRNA_M-pyrifera_M_contig118165.3763.1 ID=mRNA_M-pyrifera_M_contig118165.3763.1|Name=mRNA_M-pyrifera_M_contig118165.3763.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=360bp|location=Sequence derived from alignment at M-pyrifera_M_contig118165:357..545- (Macrocystis pyrifera P11B4 male)
ATGAACTCTGGCAGCGCATTCGAGCAGGACTACCTCGCGCGCGTGCTGAC
GTCGTCTGGAGAGGAGGTGGAGGAGGACTGCCTCGTCGACAGCTGGGTCA
CCACTGGCCGCTCTGCCTTCCTCGACTTCACCGCTGGCCCCTTCAAGTGG
GGACCTCTCGTGGCAGGAGAAGGAGTACGCATGAACTCTGGCAGCGCATT
CGAGCAGGACTACCTCGCGCGCGTGCTGACGTCGTCTGGAGAGGAGGTGG
AGGAGGACTGCCTCGTCGACAGCTGGGTCACCACTGGCCGCTCTGCCTTC
CTCGACTTCACCGCTGGCCCCTTCAAGTGGGGACCTCTCGTGGCAGGAGA
AGGAGTACGC
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