mRNA_M-pyrifera_M_contig11810.3753.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig11810.3753.1
Unique NamemRNA_M-pyrifera_M_contig11810.3753.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig11810.3753.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig11810contigM-pyrifera_M_contig11810:8386..9088 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorymitochondrion
Exons1
Model size704
Cds size363
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815700.6339548-CDS-M-pyrifera_M_contig11810:8385..87481622815700.6339548-CDS-M-pyrifera_M_contig11810:8385..8748Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig11810 8386..8748 +
1692277528.417805-CDS-M-pyrifera_M_contig11810:8385..87481692277528.417805-CDS-M-pyrifera_M_contig11810:8385..8748Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig11810 8386..8748 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815700.6494467-UTR-M-pyrifera_M_contig11810:8748..90881622815700.6494467-UTR-M-pyrifera_M_contig11810:8748..9088Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig11810 8749..9088 +
1692277528.4267619-UTR-M-pyrifera_M_contig11810:8748..90881692277528.4267619-UTR-M-pyrifera_M_contig11810:8748..9088Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig11810 8749..9088 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig11810.3753.1prot_M-pyrifera_M_contig11810.3753.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig11810 8386..8748 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig11810.3753.1

>prot_M-pyrifera_M_contig11810.3753.1 ID=prot_M-pyrifera_M_contig11810.3753.1|Name=mRNA_M-pyrifera_M_contig11810.3753.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=121bp
PAATQGFGLGCCRRRFRVVPNIFYPGQTLSYCWVAGVRTVFWWVRGRQKT
DAEASWSGNPSSVVTQRRRRWGRANETLWQYEALADSASEAMVIGCRCWG
AGTRAGGVASTGSASEEGRL*
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mRNA from alignment at M-pyrifera_M_contig11810:8386..9088+

Legend: CDSpolypeptideUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig11810.3753.1 ID=mRNA_M-pyrifera_M_contig11810.3753.1|Name=mRNA_M-pyrifera_M_contig11810.3753.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=703bp|location=Sequence derived from alignment at M-pyrifera_M_contig11810:8386..9088+ (Macrocystis pyrifera P11B4 male)
CCTGCTGCAACGCAAGGGTTCGGGTTGGGATGCTGCCGCCGTCGCTTTCG
CGTGGTGCCGAATATTTTTTATCCGGGGCAAACTCTGAGTTACTGCTGGG
TTGCGGGTGTGCGAACAGTTTTCTGGTGGGTAAGGGGGAGACAGAAGACG
GACGCGGAAGCGTCATGGAGCGGTAACCCCTCGTCGGTTGTGACCCAACG
TCGACGACGATGGGGCCGTGCGAATGAAACGCTTTGGCAGTATGAAGCGC
TCGCAGATTCAGCAAGCGAAGCTATGGTAATTGGTTGCCGTTGCTGGGGC
GCGGGGACAAGGGCGGGAGGTGTAGCTTCAACAGGAAGCGCGAGTGAGGA
AGGGCGACTGTGAGCGACTTGCAGTGAAATAGTTTTTTAGCCCGTTGTGC
TCAGTGCATCGGCGAAGTGCCCGACCCCGTTCGGCGATGAAGCCACGGCG
AAGTCGCCGTGGTCGTGGGTTATTATGGTTGTGGGTTGTTGCCGTGATCT
TGCTCCACACCCCTTTCTGTACATGGAAAAAACAAATTGTCGATTGTATA
TTCTGGAAAGCATTTGCTAGGAGCTGCTTAGATCGAAGTGCACGGTGACA
CCGCGCGCGCAGACGCTCGTACCTCCGTATTATTTTGGGTAATTTATGTA
CGGCCAGAGGGAGCTACCGTTTTGGCGTTGTCGGTGCTCCGCGGGAACAG
GGG
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig11810:8386..9088+

>mRNA_M-pyrifera_M_contig11810.3753.1 ID=mRNA_M-pyrifera_M_contig11810.3753.1|Name=mRNA_M-pyrifera_M_contig11810.3753.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=726bp|location=Sequence derived from alignment at M-pyrifera_M_contig11810:8386..9088+ (Macrocystis pyrifera P11B4 male)
CCTGCTGCAACGCAAGGGTTCGGGTTGGGATGCTGCCGCCGTCGCTTTCG
CGTGGTGCCGAATATTTTTTATCCGGGGCAAACTCTGAGTTACTGCTGGG
TTGCGGGTGTGCGAACAGTTTTCTGGTGGGTAAGGGGGAGACAGAAGACG
GACGCGGAAGCGTCATGGAGCGGTAACCCCTCGTCGGTTGTGACCCAACG
TCGACGACGATGGGGCCGTGCGAATGAAACGCTTTGGCAGTATGAAGCGC
TCGCAGATTCAGCAAGCGAAGCTATGGTAATTGGTTGCCGTTGCTGGGGC
GCGGGGACAAGGGCGGGAGGTGTAGCTTCAACAGGAAGCGCGAGTGAGGA
AGGGCGACTGTGACCTGCTGCAACGCAAGGGTTCGGGTTGGGATGCTGCC
GCCGTCGCTTTCGCGTGGTGCCGAATATTTTTTATCCGGGGCAAACTCTG
AGTTACTGCTGGGTTGCGGGTGTGCGAACAGTTTTCTGGTGGGTAAGGGG
GAGACAGAAGACGGACGCGGAAGCGTCATGGAGCGGTAACCCCTCGTCGG
TTGTGACCCAACGTCGACGACGATGGGGCCGTGCGAATGAAACGCTTTGG
CAGTATGAAGCGCTCGCAGATTCAGCAAGCGAAGCTATGGTAATTGGTTG
CCGTTGCTGGGGCGCGGGGACAAGGGCGGGAGGTGTAGCTTCAACAGGAA
GCGCGAGTGAGGAAGGGCGACTGTGA
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