mRNA_M-pyrifera_M_contig117975.3729.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig117975.3729.1
Unique NamemRNA_M-pyrifera_M_contig117975.3729.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig117975.3729.1 vs. uniprot
Match: A0A2E8K6T0_9GAMM (Uncharacterized protein n=2 Tax=Gammaproteobacteria bacterium TaxID=1913989 RepID=A0A2E8K6T0_9GAMM)

HSP 1 Score: 125 bits (313), Expect = 1.020e-31
Identity = 69/141 (48.94%), Postives = 95/141 (67.38%), Query Frame = 1
Query:   10 LRDAGAGRGPTTAFLISTPETGVDSISVTYALLDPLMTVIRPVVSFVTAVVTGVLVALFGGDEAPEGMLDELAT-DDCCPSA-SPVVPDDAPSPNKLKAVLHYGFVTLVDDLAAWLLIGFALSGVVAAAVPASFFTDTVPD 426
            LR  GA +G T+AFLISTPE+G DSIS++YA+LDPLMT+ RP+ +F+TA   G+L  LFG D+ P   L+E  T  +CC S  S  VP+   + ++LK + H+ F+ L+DDLA W+L G   +GV+ A VP  FFT+   D
Sbjct:   77 LRKEGASKGATSAFLISTPESGADSISISYAMLDPLMTIFRPIAAFLTAFFAGLLETLFGKDD-PLVNLEEADTGSECCSSGCSKDVPESHGAISRLKEIFHFSFIELMDDLATWILFGLTFAGVIMALVPEEFFTEYFND 216          
BLAST of mRNA_M-pyrifera_M_contig117975.3729.1 vs. uniprot
Match: A0A2A5DBL2_9BACT (Uncharacterized protein n=1 Tax=Planctomycetes bacterium TaxID=2026780 RepID=A0A2A5DBL2_9BACT)

HSP 1 Score: 116 bits (291), Expect = 1.270e-28
Identity = 64/142 (45.07%), Postives = 91/142 (64.08%), Query Frame = 1
Query:    1 AKGLRDAGAGRGPTTAFLISTPETGVDSISVTYALLDPLMTVIRPVVSFVTAVVTGVLVALFGGDEAPEGMLDELATDDCCPSASPVVPDDAPSPNKLKAVLHYGFVTLVDDLAAWLLIGFALSGVVAAAVPASFFTDTVPD 426
            A GLRDAGA +G TT+FLI+TPETGVDSI +T+AL+DPLMT++RP+ + +TA+ +G++V  F  D+A   + DE     CC S +   P       +L   + Y F  L+ DL  W L+GF +SG++   VP  FF  T+P+
Sbjct:   74 AAGLRDAGASKGATTSFLIATPETGVDSIGITWALMDPLMTLLRPLSAILTAMCSGLMVNRFAADDAT-ALADEPVEKSCCASKTAAEPRLR---ERLIGAVRYAFGKLMSDLTPWFLLGFLISGLITVLVPDDFFGGTLPN 211          
BLAST of mRNA_M-pyrifera_M_contig117975.3729.1 vs. uniprot
Match: A0A3B1C4T3_9ZZZZ (Uncharacterized membrane protein, YraQ family n=2 Tax=hydrothermal vent metagenome TaxID=652676 RepID=A0A3B1C4T3_9ZZZZ)

HSP 1 Score: 115 bits (289), Expect = 3.010e-28
Identity = 64/137 (46.72%), Postives = 87/137 (63.50%), Query Frame = 1
Query:   10 LRDAGAGRGPTTAFLISTPETGVDSISVTYALLDPLMTVIRPVVSFVTAVVTGVLVALFGGDEAPEGMLDELATDDCCPSASP--VVPDDAPSPNKLKAVLHYGFVTLVDDLAAWLLIGFALSGVVAAAVPASFFTD 414
            LR AGAG+G T+AFLISTPE+GVDSIS++YALLDPLMTV RP+ +F+TA   G+L  L G D+       + A   C  S      V DD     +L  ++ + F+ ++DDLA W++ G   +GV+ A VP  FFT+
Sbjct:   77 LRKAGAGKGATSAFLISTPESGVDSISISYALLDPLMTVFRPLAAFLTAFFAGLLETLIGKDDFVISTEQKSAEASCRSSECKKNAVADDGGVTGRLLEIVRFAFIEMMDDLAGWMMFGLVFAGVIMALVPEKFFTE 213          
BLAST of mRNA_M-pyrifera_M_contig117975.3729.1 vs. uniprot
Match: A0A3B1C3M0_9ZZZZ (Uncharacterized membrane protein, YraQ family n=1 Tax=hydrothermal vent metagenome TaxID=652676 RepID=A0A3B1C3M0_9ZZZZ)

HSP 1 Score: 115 bits (287), Expect = 5.270e-28
Identity = 67/138 (48.55%), Postives = 86/138 (62.32%), Query Frame = 1
Query:    1 AKGLRDAGAGRGPTTAFLISTPETGVDSISVTYALLDPLMTVIRPVVSFVTAVVTGVLVALFGGDEAPEGMLDELATDDC-CPSASPVVPDDAPSP-NKLKAVLHYGFVTLVDDLAAWLLIGFALSGVVAAAVPASFF 408
            A  LR  GA R  T AFLISTPE+GVDSIS++YALLDP+M + RP+ +F+TA+  GVL  +FG  E       E   DDC C S+      +AP P NK    L Y F  L+DDLA W++IG  L+GV+   +P +FF
Sbjct:   74 AMALRKMGASRAATNAFLISTPESGVDSISISYALLDPIMAIFRPIAAFITALTAGVLENIFGVKENETEKATEPVADDCGCNSSC-----EAPKPENKFMEGLRYAFFDLMDDLAFWMVIGLLLAGVILTVIPDNFF 206          
BLAST of mRNA_M-pyrifera_M_contig117975.3729.1 vs. uniprot
Match: A4SFL8_CHLPM (Permease n=5 Tax=Chlorobium phaeovibrioides TaxID=1094 RepID=A4SFL8_CHLPM)

HSP 1 Score: 114 bits (286), Expect = 7.380e-28
Identity = 69/131 (52.67%), Postives = 85/131 (64.89%), Query Frame = 1
Query:    1 AKGLRDAGAGRGPTTAFLISTPETGVDSISVTYALLDPLMTVIRPVVSFVTAVVTGVLVALFGGDEAPEGMLDEL--ATDDCCP---SASPVVPDDAPS-PNKLKAVLHYGFVTLVDDLAAWLLIGFALSG 375
            A GLR  GAGRGP  +FLISTPETGVDSI+VTYALLDPLMTVIRP+VSFVTA+  GV VA F   E P  ++ E   AT  CC    S+S  +P+   S   K++  L + F  L+ D+  W  +G  L+G
Sbjct:   78 AAGLRKQGAGRGPVASFLISTPETGVDSIAVTYALLDPLMTVIRPLVSFVTAIAAGVSVAFFERFEKPSAVVPEAGQATGSCCGGTCSSSAAIPEVPQSFIEKVRGGLRFAFSDLLADIGKWFFLGLLLAG 208          
BLAST of mRNA_M-pyrifera_M_contig117975.3729.1 vs. uniprot
Match: UPI0004107560 (SO_0444 family Cu/Zn efflux transporter n=1 Tax=Desulfuromonas sp. TF TaxID=1232410 RepID=UPI0004107560)

HSP 1 Score: 112 bits (279), Expect = 7.700e-27
Identity = 65/135 (48.15%), Postives = 85/135 (62.96%), Query Frame = 1
Query:    7 GLRDAGAGRGPTTAFLISTPETGVDSISVTYALLDPLMTVIRPVVSFVTAVVTGVLVALFGGDEAPEGMLDELATDDCC--PSASPVVPDDAPSPNKLKAVLHYGFVTLVDDLAAWLLIGFALSGVVAAAVPASF 405
            GL+  GAG+G T+AFLISTPETGVDSI+VTYALLDPLMT+ RP+ +FVTAV  G+L  L  G ++ +      A   CC  P   P      P   +L+  L Y F  L+ D+  WLLIG  ++GV++A +P  F
Sbjct:   79 GLKKQGAGKGATSAFLISTPETGVDSIAVTYALLDPLMTLFRPLAAFVTAVTAGLLENLLPGSDSAQVPSTGCADPSCCGGPERKPA---HLPLGGRLRGGLTYAFGELLGDIGKWLLIGIGVAGVISALIPDGF 210          
BLAST of mRNA_M-pyrifera_M_contig117975.3729.1 vs. uniprot
Match: A0A0M4CYN7_9DELT (Permease n=1 Tax=Desulfuromonas soudanensis TaxID=1603606 RepID=A0A0M4CYN7_9DELT)

HSP 1 Score: 110 bits (276), Expect = 1.980e-26
Identity = 69/138 (50.00%), Postives = 92/138 (66.67%), Query Frame = 1
Query:    7 GLRDAGAGRGPTTAFLISTPETGVDSISVTYALLDPLMTVIRPVVSFVTAVVTGVLV-ALFGGDEAPEGMLDELATDDCCPSASPVVPDDAPSPNKLKAV---LHYGFVTLVDDLAAWLLIGFALSGVVAAAVPASFF 408
            GLR  GA +G + AFL+STPETGVDSI++T+ALLDP+MTV+RP+ +FVTA VTG+L+  L   +EAP     +     C  SA    P  APSP+  K +   L Y F  L+ D+  WLL+G  L+G++AA VPA+FF
Sbjct:   78 GLRRQGASKGASAAFLVSTPETGVDSIAITWALLDPIMTVVRPLAAFVTATVTGLLINVLPDEEEAPAAP--QAPGCGCSGSACGETP--APSPSLRKRLADGLGYAFGELLGDIGKWLLLGILLAGIIAALVPAAFF 211          
BLAST of mRNA_M-pyrifera_M_contig117975.3729.1 vs. uniprot
Match: W4LBX4_9BACT (Protein HflK n=1 Tax=Candidatus Entotheonella factor TaxID=1429438 RepID=W4LBX4_9BACT)

HSP 1 Score: 112 bits (281), Expect = 3.320e-26
Identity = 73/147 (49.66%), Postives = 89/147 (60.54%), Query Frame = 1
Query:   10 LRDAGAGRGPTTAFLISTPETGVDSISVTYALLDPLMTVIRPVVSFVTAVVTGVLV-ALFGGDEAPEGMLDELATDDCCPSASPVVPDDAPSPNK--------LKAVLHYGFVTLVDDLAAWLLIGFALSGVVAAAVPASFFTDTVP 423
            LR +GA RG TT+FLISTPETG+DSI +TYALLDP+MT+ RP+ +  TAVVTG LV AL     A E     L  DDCC      V  D PS            +  L Y F  L+DDL  WL++GF +SG++  AVP +FFT  VP
Sbjct:   94 LRQSGASRGATTSFLISTPETGLDSIGITYALLDPIMTIARPLAALTTAVVTGTLVTALEQLGWAGEPGSSSLDADDCCDEHDHDV-GDLPSGATGWVRSREIARRSLAYAFGPLMDDLTPWLILGFLISGLIVIAVPDNFFTLYVP 239          
BLAST of mRNA_M-pyrifera_M_contig117975.3729.1 vs. uniprot
Match: UPI000C28B42E (SO_0444 family Cu/Zn efflux transporter n=1 Tax=Alteromonas flava TaxID=2048003 RepID=UPI000C28B42E)

HSP 1 Score: 110 bits (274), Expect = 3.420e-26
Identity = 57/138 (41.30%), Postives = 88/138 (63.77%), Query Frame = 1
Query:    1 AKGLRDAGAGRGPTTAFLISTPETGVDSISVTYALLDPLMTVIRPVVSFVTAVVTGVLVALFGGDEAPEGMLDELATDDCCPSASPVVPDDAPSPNKLKAVLHYGFVTLVDDLAAWLLIGFALSGVVAAAVPASFFTD 414
            A G+R +GA +  T +FL++TPETGVDSI +TYAL+ P+M + RP+ +  +AVVTG+ +A++G +   E  +++ AT  CC  ++   P      NK KA+LHYGF  L+ D   WLLIG   + ++   VPA++  +
Sbjct:   68 AMGIRRSGASKASTASFLVATPETGVDSIGITYALMGPVMAIARPIAAISSAVVTGIAIAIWGRESTIE--VEQPATKSCCHKSAAPNPQQTSLWNKSKAILHYGFDKLLADFMKWLLIGLFFAALIVTYVPANWMAE 203          
BLAST of mRNA_M-pyrifera_M_contig117975.3729.1 vs. uniprot
Match: UPI001FADA85D (permease n=2 Tax=unclassified Fundidesulfovibrio TaxID=2905137 RepID=UPI001FADA85D)

HSP 1 Score: 109 bits (273), Expect = 5.010e-26
Identity = 64/139 (46.04%), Postives = 86/139 (61.87%), Query Frame = 1
Query:    1 AKGLRDAGAGRGPTTAFLISTPETGVDSISVTYALLDPLMTVIRPVVSFVTAVVTGVLVALFGGDEAPEGMLDELATDDCCPSASPVVPDDA------PSPNKLKAVLHYGFVTLVDDLAAWLLIGFALSGVVAAAVPA 399
            A GLRDAGA +G   AF+ISTPETGVDSI+V +ALLDPLMT++RPV +FVT  + GVLV  F  DEAP G               P++P DA      P  ++L+A L Y F  ++  +  W L+G  ++G++ A +PA
Sbjct:   74 AAGLRDAGASKGAAAAFMISTPETGVDSIAVNWALLDPLMTIVRPVAAFVTGALAGVLVNRFAPDEAPAGA-----------RPRPLIPLDAFAVRKPPLLSRLRAGLEYAFGEMLSGIGRWFLLGVLVAGLIGAILPA 201          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig117975.3729.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A2E8K6T0_9GAMM1.020e-3148.94Uncharacterized protein n=2 Tax=Gammaproteobacteri... [more]
A0A2A5DBL2_9BACT1.270e-2845.07Uncharacterized protein n=1 Tax=Planctomycetes bac... [more]
A0A3B1C4T3_9ZZZZ3.010e-2846.72Uncharacterized membrane protein, YraQ family n=2 ... [more]
A0A3B1C3M0_9ZZZZ5.270e-2848.55Uncharacterized membrane protein, YraQ family n=1 ... [more]
A4SFL8_CHLPM7.380e-2852.67Permease n=5 Tax=Chlorobium phaeovibrioides TaxID=... [more]
UPI00041075607.700e-2748.15SO_0444 family Cu/Zn efflux transporter n=1 Tax=De... [more]
A0A0M4CYN7_9DELT1.980e-2650.00Permease n=1 Tax=Desulfuromonas soudanensis TaxID=... [more]
W4LBX4_9BACT3.320e-2649.66Protein HflK n=1 Tax=Candidatus Entotheonella fact... [more]
UPI000C28B42E3.420e-2641.30SO_0444 family Cu/Zn efflux transporter n=1 Tax=Al... [more]
UPI001FADA85D5.010e-2646.04permease n=2 Tax=unclassified Fundidesulfovibrio T... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig117975contigM-pyrifera_M_contig117975:6..551 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeBacteria
Seed ortholog score115.9
Seed ortholog evalue1.5e-23
Seed eggNOG ortholog290318.Cvib_1265
KEGG koko:K07089
Hectar predicted targeting categoryother localisation
EggNOG free text desc.PFAM permease
EggNOG OGs1FDFD@1090,COG0701@1,COG0701@2
COG Functional cat.S
Best tax levelChlorobi
Best eggNOG OGNA|NA|NA
BRITEko00000
Exons2
Model size426
Cds size426
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815698.8843489-CDS-M-pyrifera_M_contig117975:5..2811622815698.8843489-CDS-M-pyrifera_M_contig117975:5..281Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig117975 6..281 +
1692277527.5600786-CDS-M-pyrifera_M_contig117975:5..2811692277527.5600786-CDS-M-pyrifera_M_contig117975:5..281Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig117975 6..281 +
1622815698.8954306-CDS-M-pyrifera_M_contig117975:401..5511622815698.8954306-CDS-M-pyrifera_M_contig117975:401..551Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig117975 402..551 +
1692277527.5694528-CDS-M-pyrifera_M_contig117975:401..5511692277527.5694528-CDS-M-pyrifera_M_contig117975:401..551Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig117975 402..551 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig117975.3729.1prot_M-pyrifera_M_contig117975.3729.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig117975 6..551 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig117975.3729.1

>prot_M-pyrifera_M_contig117975.3729.1 ID=prot_M-pyrifera_M_contig117975.3729.1|Name=mRNA_M-pyrifera_M_contig117975.3729.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=142bp
AKGLRDAGAGRGPTTAFLISTPETGVDSISVTYALLDPLMTVIRPVVSFV
TAVVTGVLVALFGGDEAPEGMLDELATDDCCPSASPVVPDDAPSPNKLKA
VLHYGFVTLVDDLAAWLLIGFALSGVVAAAVPASFFTDTVPD
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mRNA from alignment at M-pyrifera_M_contig117975:6..551+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig117975.3729.1 ID=mRNA_M-pyrifera_M_contig117975.3729.1|Name=mRNA_M-pyrifera_M_contig117975.3729.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=546bp|location=Sequence derived from alignment at M-pyrifera_M_contig117975:6..551+ (Macrocystis pyrifera P11B4 male)
GCCAAGGGGCTGCGCGATGCGGGCGCCGGCCGCGGCCCGACGACGGCGTT CCTGATCTCGACGCCCGAGACGGGCGTCGACTCGATCAGCGTGACGTATG CGCTGCTCGACCCCTTGATGACCGTGATCCGGCCGGTGGTCTCGTTCGTG ACGGCGGTCGTGACGGGCGTGCTGGTCGCGCTCTTCGGCGGCGATGAAGC TCCGGAAGGCATGCTCGACGAGCTGGCCACCGACGACTGCTGCCCATCGG CGTCGCCGGTCGTGCCCGACGATGCTGTGGCGAGCGGCTGCAAGAGCGCG GCGCCCGGGCCGGGTGGAGCCGAGGGCGTGGCGGCGAGTACCGTTGGTGT CGCGCCGGGCACCGGGGATGCTGAGGCCGGCGGTTGCTGCCCCGAGCCCA GCCCGAACAAGCTCAAGGCGGTCCTGCACTACGGCTTCGTGACCCTCGTC GACGACCTCGCGGCGTGGCTCTTGATCGGCTTTGCGCTGTCGGGCGTCGT CGCCGCGGCGGTGCCGGCCTCGTTCTTCACCGACACGGTCCCGGAC
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig117975:6..551+

>mRNA_M-pyrifera_M_contig117975.3729.1 ID=mRNA_M-pyrifera_M_contig117975.3729.1|Name=mRNA_M-pyrifera_M_contig117975.3729.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=852bp|location=Sequence derived from alignment at M-pyrifera_M_contig117975:6..551+ (Macrocystis pyrifera P11B4 male)
GCCAAGGGGCTGCGCGATGCGGGCGCCGGCCGCGGCCCGACGACGGCGTT
CCTGATCTCGACGCCCGAGACGGGCGTCGACTCGATCAGCGTGACGTATG
CGCTGCTCGACCCCTTGATGACCGTGATCCGGCCGGTGGTCTCGTTCGTG
ACGGCGGTCGTGACGGGCGTGCTGGTCGCGCTCTTCGGCGGCGATGAAGC
TCCGGAAGGCATGCTCGACGAGCTGGCCACCGACGACTGCTGCCCATCGG
CGTCGCCGGTCGTGCCCGACGATGCTGCCAAGGGGCTGCGCGATGCGGGC
GCCGGCCGCGGCCCGACGACGGCGTTCCTGATCTCGACGCCCGAGACGGG
CGTCGACTCGATCAGCGTGACGTATGCGCTGCTCGACCCCTTGATGACCG
TGATCCGGCCGGTGGTCTCGTTCGTGACGGCGGTCGTGACGGGCGTGCTG
GTCGCGCTCTTCGGCGGCGATGAAGCTCCGGAAGGCATGCTCGACGAGCT
GGCCACCGACGACTGCTGCCCATCGGCGTCGCCGGTCGTGCCCGACGATG
CTCCCAGCCCGAACAAGCTCAAGGCGGTCCTGCACTACGGCTTCGTGACC
CTCGTCGACGACCTCGCGGCGTGGCTCTTGATCGGCTTTGCGCTGTCGGG
CGTCGTCGCCGCGGCGGTGCCGGCCTCGTTCTTCACCGACACGGTCCCGG
ACCCCAGCCCGAACAAGCTCAAGGCGGTCCTGCACTACGGCTTCGTGACC
CTCGTCGACGACCTCGCGGCGTGGCTCTTGATCGGCTTTGCGCTGTCGGG
CGTCGTCGCCGCGGCGGTGCCGGCCTCGTTCTTCACCGACACGGTCCCGG
AC
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