mRNA_M-pyrifera_M_contig117971.3727.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig117971.3727.1
Unique NamemRNA_M-pyrifera_M_contig117971.3727.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig117971.3727.1 vs. uniprot
Match: A0A7C1WHZ9_9BACT (Uncharacterized protein n=1 Tax=Planctomycetes bacterium TaxID=2026780 RepID=A0A7C1WHZ9_9BACT)

HSP 1 Score: 156 bits (394), Expect = 2.250e-44
Identity = 77/134 (57.46%), Postives = 93/134 (69.40%), Query Frame = 1
Query:    7 RAWLEASLRTGPLLLEPLVRIEHEYTRSGTITQEGHVHMSEPCFQATTREGAWTHTERRGHEVAPADDAALAHAFEAAGRALRAAGYAGPFGIDAFRYRDPWNETHSHLNPLSEINARYTMDWALALAPRRTRA 408
            RAWL ASLR GPL+LEP VR+  E+TRSG + ++G VH+S+PC+QAT R GAW  T      +   +D  L  A  AAG AL +AGY GPFGIDAFR+ DP   +   LNPLSEINAR+TMDWALA+  R  RA
Sbjct:  175 RAWLAASLRRGPLVLEPFVRVTREFTRSGWVREDGSVHVSQPCYQATDRSGAWLETAEARDGITREEDRRLGEAVAAAGAALASAGYRGPFGIDAFRHEDPRGGSGERLNPLSEINARFTMDWALAMPSRPERA 308          
BLAST of mRNA_M-pyrifera_M_contig117971.3727.1 vs. uniprot
Match: A0A2E9WLZ0_9PLAN (ATP-grasp domain-containing protein n=2 Tax=Planctomycetes TaxID=203682 RepID=A0A2E9WLZ0_9PLAN)

HSP 1 Score: 140 bits (353), Expect = 3.590e-38
Identity = 77/135 (57.04%), Postives = 91/135 (67.41%), Query Frame = 1
Query:    1 SARAWLEASLRTGPLLLEPLVRIEHEYTRSGTITQEGHVHMSEPCFQATTREGAWTHTERRGHEVAP-ADDAALAHAFEAAGRALRAAGYAGPFGIDAFRYRDPWNETHSHL--NPLSEINARYTMDWALALAPR 396
            S R WL ASLR GPL +EP V IE EYTRSG +  +G V ++ PCFQ T REGAW HT+    ++ P ADD  L  A E AGRAL  AGY G FGIDAFR+R P  E+H  L  NP+SEINAR+TMDW   ++ R
Sbjct:  169 SDRTWLVASLRLGPLTIEPWVEIEREYTRSGWVESDGAVLIAPPCFQKTNREGAWEHTDTADPDLVPSADDQLLQQAVEQAGRALARAGYFGAFGIDAFRHRVP-GESHRPLVLNPMSEINARFTMDWFQGMSGR 302          
BLAST of mRNA_M-pyrifera_M_contig117971.3727.1 vs. uniprot
Match: A0A523PUU4_9BACT (ATP-grasp domain-containing protein n=1 Tax=Planctomycetes bacterium TaxID=2026780 RepID=A0A523PUU4_9BACT)

HSP 1 Score: 139 bits (350), Expect = 1.430e-37
Identity = 75/132 (56.82%), Postives = 87/132 (65.91%), Query Frame = 1
Query:    7 RAWLEASLRTGPLLLEPLVRIEHEYTRSGTITQEGHVHMSEPCFQATTREGAWTHTER-RGHEVAPADDAALAHAFEAAGRALRAAGYAGPFGIDAFRYRDPWN-ETHSHLNPLSEINARYTMDWALALAPR 396
            RAWL +SLR GPLL+EP VR+  EYTRS  ++ +G V +S PC QATT EGAWT TER     V+  DDA L  A  AAG AL  AGY GPFGIDA+R+  P        LNPLSEINAR+TMDW   +  R
Sbjct:  169 RAWLASSLRRGPLLIEPWVRVTREYTRSAFVSPDGRVLISPPCLQATTPEGAWTRTERAESGTVSRVDDARLEEAVAAAGTALAQAGYFGPFGIDAYRHEVPGRGRAREVLNPLSEINARFTMDWVTGMGAR 300          
BLAST of mRNA_M-pyrifera_M_contig117971.3727.1 vs. uniprot
Match: A0A800G4A9_9BACT (Uncharacterized protein n=1 Tax=Planctomycetes bacterium TaxID=2026780 RepID=A0A800G4A9_9BACT)

HSP 1 Score: 137 bits (345), Expect = 7.750e-37
Identity = 77/133 (57.89%), Postives = 88/133 (66.17%), Query Frame = 1
Query:    7 RAWLEASLRTGPLLLEPLVRIEHEYTRSGTITQEGHVHMSEPCFQATTREGAWTHTERRGHE-VAPADDAALAHAFEAAGRALRAAGYAGPFGIDAFRYRDPWNETHSHL--NPLSEINARYTMDWALALAPR 396
            RAWL ASLR GPL +EP V IE EYTRSG +   G V ++ PCFQ T+REGAW HT     + V  ADD  L  A E AGRAL  AGY G FGIDAFR+R P   +H  L  NP+SEINAR+TMDW L +  R
Sbjct:  171 RAWLNASLRLGPLTIEPWVEIETEYTRSGWVESGGAVLIAPPCFQRTSREGAWEHTATADPDLVHSADDQLLQQAVEQAGRALARAGYFGAFGIDAFRHRVPGG-SHRQLVLNPMSEINARFTMDWTLGMGER 302          
BLAST of mRNA_M-pyrifera_M_contig117971.3727.1 vs. uniprot
Match: A0A521KQM9_9BACT (ATP-grasp domain-containing protein n=1 Tax=Planctomycetes bacterium TaxID=2026780 RepID=A0A521KQM9_9BACT)

HSP 1 Score: 137 bits (344), Expect = 1.190e-36
Identity = 75/130 (57.69%), Postives = 87/130 (66.92%), Query Frame = 1
Query:   10 AWLEASLRTGPLLLEPLVRIEHEYTRSGTITQEGHVHMSEPCFQATTREGAWTHTERRGHE-VAPADDAALAHAFEAAGRALRAAGYAGPFGIDAFRYRDPWNETHSHLNPLSEINARYTMDWALALAPR 396
            AWL ASLR GPL++EP V I  E+TRSG IT+EG V +S PCFQA    GAWT TE    + +A  DD  L  A E  GRAL A GY G FG+DA+R+R       + LNPLSEINARYTMDWALA+  R
Sbjct:  170 AWLVASLRRGPLVVEPWVEIVREHTRSGWITREGAVSISAPCFQAVDEHGAWTRTELAELDALARDDDRRLEEAMEVVGRALAARGYFGAFGVDAYRHRALDGSGRTVLNPLSEINARYTMDWALAMGER 299          
BLAST of mRNA_M-pyrifera_M_contig117971.3727.1 vs. uniprot
Match: A0A2D6QBV6_9ARCH (Uncharacterized protein n=1 Tax=Candidatus Woesearchaeota archaeon TaxID=2026803 RepID=A0A2D6QBV6_9ARCH)

HSP 1 Score: 134 bits (336), Expect = 1.220e-35
Identity = 74/134 (55.22%), Postives = 88/134 (65.67%), Query Frame = 1
Query:    1 SARAWLEASLRTGPLLLEPLVRIEHEYTRSGTITQEGHVHMSEPCFQATTREGAWTHTERRGHE-VAPADDAALAHAFEAAGRALRAAGYAGPFGIDAFRYR-DPWNETHSHLNPLSEINARYTMDWALALAPR 396
            S +AWL ASLR GPL +EP V IE EYTRSG +  +G V ++ PCFQ TTREGAW  T+    + V   DD  L  A E +GRAL +AGY G FGIDAFR+R    N     LNP+SEINAR+TMDW L +  R
Sbjct:  169 SDQAWLVASLRLGPLTIEPWVEIETEYTRSGWVGVDGTVLIAPPCFQKTTREGAWERTDTAAPDLVTREDDRLLQQAVEQSGRALASAGYFGAFGIDAFRHRLQGGNSRRLVLNPMSEINARFTMDWTLGMGSR 302          
BLAST of mRNA_M-pyrifera_M_contig117971.3727.1 vs. uniprot
Match: A0A2D5B014_9BACT (Uncharacterized protein n=1 Tax=Planctomycetes bacterium TaxID=2026780 RepID=A0A2D5B014_9BACT)

HSP 1 Score: 132 bits (333), Expect = 4.040e-35
Identity = 72/134 (53.73%), Postives = 88/134 (65.67%), Query Frame = 1
Query:   10 AWLEASLRTGPLLLEPLVRIEHEYTRSGTITQEGHVHMSEPCFQATTREGAWTHTE--RRGHEVAPADDAALAHAFEAAGRALRAAGYAGPFGIDAFRYRDPWNETHSHLNPLSEINARYTMDWALALAPRRTR 405
            AWL   LR G L++EP V I  E+TRSG + ++GHV  + PCFQATTREGAW  TE   RG  +  A+DA L  AF AAGRAL  AGY GPFGID+FR+R     +   LNPL EIN R+TMDW   ++  + R
Sbjct:  171 AWLVKGLRKGALIIEPWVTITQEFTRSGWVARDGHVSSAAPCFQATTREGAWRRTECAERG-AITRAEDARLEGAFFAAGRALAGAGYFGPFGIDSFRHRCGGPGSAELLNPLGEINPRFTMDWVAGMSADQGR 303          
BLAST of mRNA_M-pyrifera_M_contig117971.3727.1 vs. uniprot
Match: A0A518D537_9BACT (Uncharacterized protein n=1 Tax=Planctomycetes bacterium Pla163 TaxID=2528008 RepID=A0A518D537_9BACT)

HSP 1 Score: 122 bits (305), Expect = 1.580e-29
Identity = 70/129 (54.26%), Postives = 83/129 (64.34%), Query Frame = 1
Query:    7 RAWLEASLRTGPLLLEPLVRIEHEYTRSGTITQEGHVHMSEPCFQATTREGAWTHTERRGH-EVAPADDAALAHAFEAAGRALRAAGYAGPFGIDAFRYRDPWNETHSHLNPLSEINARYTMDWALALA 390
            R WL AS R GPL++EP V +  E T SGT+ + G + ++ PCFQATT  GAWT TER G  ++   DD  L  A E  GRAL AAG+ GPFGIDAFRYR       + LN LSEINAR TMD  +A A
Sbjct:  554 RRWLIASARRGPLVIEPWVDVLEEITVSGTVGERGEIVVAAPCFQATTSRGAWTGTERAGAGDLVRRDDDLLLSACEETGRALFAAGFTGPFGIDAFRYRSEPGAP-ARLNALSEINARLTMDRGVAFA 681          
BLAST of mRNA_M-pyrifera_M_contig117971.3727.1 vs. uniprot
Match: A0A518BIM3_9BACT (Uncharacterized protein n=1 Tax=Planctomycetes bacterium Pla133 TaxID=2528011 RepID=A0A518BIM3_9BACT)

HSP 1 Score: 113 bits (282), Expect = 8.460e-28
Identity = 64/123 (52.03%), Postives = 78/123 (63.41%), Query Frame = 1
Query:    7 RAWLEASLRTGPLLLEPLVRIEHEYTRSGTITQEGHVHMSEPCFQATTREGAWTHTERRG-HEVAPADDAALAHAFEAAGRALRAAGYAGPFGIDAFRYRDPWNETHSHLNPLSEINARYTMD 372
            RAWL ASL  GP+++EP   +  E T  G +T  G+V +  P FQ TTR+GAWT T+    + +  ADD+ +  A    GRAL AAGY GPFGIDAFR+R P      HLN LSEINAR TMD
Sbjct:  167 RAWLAASLARGPVVVEPWADVVEELTVCGAVTASGNVQVLTPGFQLTTRQGAWTRTDAADPNHLGRADDSTVLAACNEVGRALAAAGYRGPFGIDAFRHR-PAPGAAPHLNVLSEINARLTMD 288          
BLAST of mRNA_M-pyrifera_M_contig117971.3727.1 vs. uniprot
Match: A0A800JMJ6_9BACT (ATP-grasp domain-containing protein n=1 Tax=Planctomycetes bacterium TaxID=2026780 RepID=A0A800JMJ6_9BACT)

HSP 1 Score: 112 bits (280), Expect = 1.910e-27
Identity = 59/124 (47.58%), Postives = 78/124 (62.90%), Query Frame = 1
Query:   10 AWLEASLRTGPLLLEPLVRIEHEYTRSGTITQEGHVHMSEPCFQATTREGAWTHTERRGHEVAPAD-DAALAHAFEAAGRALRAAGYAGPFGIDAFRYRDPWNETHSHLNPLSEINARYTMDWA 378
            +W+EASLR+GPL +EP V +  E+TRSG ++  G V ++ PC Q T   GAW  ++    EV P   D  L  AFE AGRA+  AGY G FG+D++ +R    +    LN +SEIN RYTMDWA
Sbjct:  172 SWIEASLRSGPLTIEPWVEVVQEFTRSGWVSARGEVTLAPPCLQETDAAGAWVCSQAASPEVLPRTIDDRLQEAFEHAGRAIAKAGYHGAFGVDSYLHRTTSGQVA--LNVMSEINGRYTMDWA 293          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig117971.3727.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A7C1WHZ9_9BACT2.250e-4457.46Uncharacterized protein n=1 Tax=Planctomycetes bac... [more]
A0A2E9WLZ0_9PLAN3.590e-3857.04ATP-grasp domain-containing protein n=2 Tax=Planct... [more]
A0A523PUU4_9BACT1.430e-3756.82ATP-grasp domain-containing protein n=1 Tax=Planct... [more]
A0A800G4A9_9BACT7.750e-3757.89Uncharacterized protein n=1 Tax=Planctomycetes bac... [more]
A0A521KQM9_9BACT1.190e-3657.69ATP-grasp domain-containing protein n=1 Tax=Planct... [more]
A0A2D6QBV6_9ARCH1.220e-3555.22Uncharacterized protein n=1 Tax=Candidatus Woesear... [more]
A0A2D5B014_9BACT4.040e-3553.73Uncharacterized protein n=1 Tax=Planctomycetes bac... [more]
A0A518D537_9BACT1.580e-2954.26Uncharacterized protein n=1 Tax=Planctomycetes bac... [more]
A0A518BIM3_9BACT8.460e-2852.03Uncharacterized protein n=1 Tax=Planctomycetes bac... [more]
A0A800JMJ6_9BACT1.910e-2747.58ATP-grasp domain-containing protein n=1 Tax=Planct... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig117971contigM-pyrifera_M_contig117971:137..550 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeBacteria
Seed ortholog score88.6
Seed ortholog evalue2.5e-15
Seed eggNOG ortholog1192034.CAP_3717
Hectar predicted targeting categoryother localisation
EggNOG OGs1QSSU@1224,29XG3@1,2X95V@28221,2Z23G@29,30J6J@2,4355H@68525
Best tax levelMyxococcales
Best eggNOG OGNA|NA|NA
Exons1
Model size414
Cds size414
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815698.7892482-CDS-M-pyrifera_M_contig117971:136..5501622815698.7892482-CDS-M-pyrifera_M_contig117971:136..550Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig117971 137..550 -
1692277527.531857-CDS-M-pyrifera_M_contig117971:136..5501692277527.531857-CDS-M-pyrifera_M_contig117971:136..550Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig117971 137..550 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig117971.3727.1prot_M-pyrifera_M_contig117971.3727.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig117971 137..550 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig117971.3727.1

>prot_M-pyrifera_M_contig117971.3727.1 ID=prot_M-pyrifera_M_contig117971.3727.1|Name=mRNA_M-pyrifera_M_contig117971.3727.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=138bp
SARAWLEASLRTGPLLLEPLVRIEHEYTRSGTITQEGHVHMSEPCFQATT
REGAWTHTERRGHEVAPADDAALAHAFEAAGRALRAAGYAGPFGIDAFRY
RDPWNETHSHLNPLSEINARYTMDWALALAPRRTRAT*
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mRNA from alignment at M-pyrifera_M_contig117971:137..550-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig117971.3727.1 ID=mRNA_M-pyrifera_M_contig117971.3727.1|Name=mRNA_M-pyrifera_M_contig117971.3727.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=414bp|location=Sequence derived from alignment at M-pyrifera_M_contig117971:137..550- (Macrocystis pyrifera P11B4 male)
TCCGCCCGCGCCTGGCTCGAAGCCTCCCTCCGCACCGGCCCCCTCCTCCT CGAACCCCTGGTCCGCATCGAGCACGAATACACCCGCTCCGGCACCATCA CCCAAGAGGGCCACGTCCACATGTCCGAGCCCTGCTTCCAAGCCACCACC CGCGAAGGCGCTTGGACCCACACCGAACGCCGCGGCCACGAAGTCGCACC CGCCGACGACGCCGCCCTCGCCCACGCCTTCGAAGCCGCCGGCCGCGCCC TCCGCGCCGCAGGCTACGCCGGCCCCTTCGGCATCGACGCGTTCCGGTAT CGCGACCCGTGGAACGAAACCCACTCTCACCTCAACCCCCTCTCCGAGAT CAACGCCCGCTACACGATGGACTGGGCCCTCGCGCTAGCGCCGCGGCGCA CGCGCGCGACTTGA
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig117971:137..550-

>mRNA_M-pyrifera_M_contig117971.3727.1 ID=mRNA_M-pyrifera_M_contig117971.3727.1|Name=mRNA_M-pyrifera_M_contig117971.3727.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=828bp|location=Sequence derived from alignment at M-pyrifera_M_contig117971:137..550- (Macrocystis pyrifera P11B4 male)
TCCGCCCGCGCCTGGCTCGAAGCCTCCCTCCGCACCGGCCCCCTCCTCCT
CGAACCCCTGGTCCGCATCGAGCACGAATACACCCGCTCCGGCACCATCA
CCCAAGAGGGCCACGTCCACATGTCCGAGCCCTGCTTCCAAGCCACCACC
CGCGAAGGCGCTTGGACCCACACCGAACGCCGCGGCCACGAAGTCGCACC
CGCCGACGACGCCGCCCTCGCCCACGCCTTCGAAGCCGCCGGCCGCGCCC
TCCGCGCCGCAGGCTACGCCGGCCCCTTCGGCATCGACGCGTTCCGGTAT
CGCGACCCGTGGAACGAAACCCACTCTCACCTCAACCCCCTCTCCGAGAT
CAACGCCCGCTACACGATGGACTGGGCCCTCGCGCTAGCGCCGCGGCGCA
CGCGCGCGACTTGATCCGCCCGCGCCTGGCTCGAAGCCTCCCTCCGCACC
GGCCCCCTCCTCCTCGAACCCCTGGTCCGCATCGAGCACGAATACACCCG
CTCCGGCACCATCACCCAAGAGGGCCACGTCCACATGTCCGAGCCCTGCT
TCCAAGCCACCACCCGCGAAGGCGCTTGGACCCACACCGAACGCCGCGGC
CACGAAGTCGCACCCGCCGACGACGCCGCCCTCGCCCACGCCTTCGAAGC
CGCCGGCCGCGCCCTCCGCGCCGCAGGCTACGCCGGCCCCTTCGGCATCG
ACGCGTTCCGGTATCGCGACCCGTGGAACGAAACCCACTCTCACCTCAAC
CCCCTCTCCGAGATCAACGCCCGCTACACGATGGACTGGGCCCTCGCGCT
AGCGCCGCGGCGCACGCGCGCGACTTGA
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