mRNA_M-pyrifera_M_contig117969.3725.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig117969.3725.1
Unique NamemRNA_M-pyrifera_M_contig117969.3725.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig117969.3725.1 vs. uniprot
Match: A0A8J9W3M0_BRALA (TAF11 protein n=1 Tax=Branchiostoma lanceolatum TaxID=7740 RepID=A0A8J9W3M0_BRALA)

HSP 1 Score: 65.9 bits (159), Expect = 3.470e-11
Identity = 33/85 (38.82%), Postives = 58/85 (68.24%), Query Frame = 1 
Query:   16 SIKVSELLPTSIESVAAQTEPMRALLDQFTTEQMERFEKFRSSSLAKAQVKKLMARAIGGAVTDNMLIVMSGVTKVWVGELVEEA 270
            S++  E   T +E +  + + M+ L+  F+ EQ+ R+E FR S+  KA +K++M +  G +V+ N++I M+G++KV+VGE+VEEA
Sbjct:   73 SVEEGETRKTKMEQLEEERQKMQVLVASFSEEQLNRYEMFRRSAFPKASIKRIMQQMTGTSVSQNVVIAMAGISKVFVGEVVEEA 157
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BLAST of mRNA_M-pyrifera_M_contig117969.3725.1 vs. uniprot
Match: UPI0016035AC5 (transcription initiation factor TFIID subunit 11-like n=1 Tax=Branchiostoma floridae TaxID=7739 RepID=UPI0016035AC5)

HSP 1 Score: 65.9 bits (159), Expect = 3.470e-11
Identity = 33/85 (38.82%), Postives = 58/85 (68.24%), Query Frame = 1 
Query:   16 SIKVSELLPTSIESVAAQTEPMRALLDQFTTEQMERFEKFRSSSLAKAQVKKLMARAIGGAVTDNMLIVMSGVTKVWVGELVEEA 270
            S++  E   T +E +  + + M+ L+  F+ EQ+ R+E FR S+  KA +K++M +  G +V+ N++I M+G++KV+VGE+VEEA
Sbjct:   73 SVEEGETRKTKMEQLEEERQKMQVLVASFSEEQLNRYEMFRRSAFPKASIKRIMQQMTGTSVSQNVVIAMAGISKVFVGEVVEEA 157
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BLAST of mRNA_M-pyrifera_M_contig117969.3725.1 vs. uniprot
Match: J9JZX6_ACYPI (TAFII28 domain-containing protein n=6 Tax=Aphididae TaxID=27482 RepID=J9JZX6_ACYPI)

HSP 1 Score: 65.1 bits (157), Expect = 4.180e-11
Identity = 32/70 (45.71%), Postives = 49/70 (70.00%), Query Frame = 1 
Query:   61 AAQTEPMRALLDQFTTEQMERFEKFRSSSLAKAQVKKLMARAIGGAVTDNMLIVMSGVTKVWVGELVEEA 270
            A + E MR L+  FT EQ++R+E FR S   KA +K+++    G +V+ N++I MSG+ KV++GE+VEEA
Sbjct:   58 AEEREKMRVLVSNFTEEQLDRYEMFRRSVFPKAAIKRIVQTITGNSVSQNVVIAMSGIAKVFIGEIVEEA 127
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BLAST of mRNA_M-pyrifera_M_contig117969.3725.1 vs. uniprot
Match: A0A6G0U7P9_APHGL (TAFII28 domain-containing protein n=6 Tax=Aphididae TaxID=27482 RepID=A0A6G0U7P9_APHGL)

HSP 1 Score: 65.1 bits (157), Expect = 4.180e-11
Identity = 32/70 (45.71%), Postives = 49/70 (70.00%), Query Frame = 1 
Query:   61 AAQTEPMRALLDQFTTEQMERFEKFRSSSLAKAQVKKLMARAIGGAVTDNMLIVMSGVTKVWVGELVEEA 270
            A + E MR L+  FT EQ++R+E FR S   KA +K+++    G +V+ N++I MSG+ KV++GE+VEEA
Sbjct:   58 AEEREKMRVLVSNFTEEQLDRYEMFRRSVFPKAAIKRIVQTITGNSVSQNVVIAMSGIAKVFIGEIVEEA 127
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BLAST of mRNA_M-pyrifera_M_contig117969.3725.1 vs. uniprot
Match: A0A1A9Y512_GLOFF (TAFII28 domain-containing protein n=5 Tax=Glossina TaxID=7393 RepID=A0A1A9Y512_GLOFF)

HSP 1 Score: 65.5 bits (158), Expect = 4.640e-11
Identity = 36/78 (46.15%), Postives = 52/78 (66.67%), Query Frame = 1 
Query:   37 LPTSIESVAAQTEPMRALLDQFTTEQMERFEKFRSSSLAKAQVKKLMARAIGGAVTDNMLIVMSGVTKVWVGELVEEA 270
            L T  E    + E M+ L+  FT EQ++R+E +R S+  KA VK+LM    G +V+ N++I MSG+ KV+VGE+VEEA
Sbjct:   75 LKTKKEMEEEEREKMQVLVSNFTEEQLDRYEMYRRSAFPKAAVKRLMQTITGCSVSQNVVIAMSGIAKVFVGEVVEEA 152
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BLAST of mRNA_M-pyrifera_M_contig117969.3725.1 vs. uniprot
Match: A0A1A9WK97_9MUSC (TAFII28 domain-containing protein n=1 Tax=Glossina brevipalpis TaxID=37001 RepID=A0A1A9WK97_9MUSC)

HSP 1 Score: 65.5 bits (158), Expect = 4.640e-11
Identity = 36/78 (46.15%), Postives = 52/78 (66.67%), Query Frame = 1 
Query:   37 LPTSIESVAAQTEPMRALLDQFTTEQMERFEKFRSSSLAKAQVKKLMARAIGGAVTDNMLIVMSGVTKVWVGELVEEA 270
            L T  E    + E M+ L+  FT EQ++R+E +R S+  KA VK+LM    G +V+ N++I MSG+ KV+VGE+VEEA
Sbjct:   75 LKTKKEMEEEEREKMQVLVSNFTEEQLDRYEMYRRSAFPKAAVKRLMQTITGCSVSQNVVIAMSGIAKVFVGEVVEEA 152
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BLAST of mRNA_M-pyrifera_M_contig117969.3725.1 vs. uniprot
Match: U5EQV7_9DIPT (Putative transcription initiation factor tfiid subunit 11 n=1 Tax=Corethrella appendiculata TaxID=1370023 RepID=U5EQV7_9DIPT)

HSP 1 Score: 65.5 bits (158), Expect = 5.970e-11
Identity = 34/66 (51.52%), Postives = 48/66 (72.73%), Query Frame = 1 
Query:   73 EPMRALLDQFTTEQMERFEKFRSSSLAKAQVKKLMARAIGGAVTDNMLIVMSGVTKVWVGELVEEA 270
            E M+ L+  FT EQ++R+E FR S+  KA VK+LM    G +V+ N++I MSG+ KV+VGE+VEEA
Sbjct:  104 EKMQVLVSNFTEEQLDRYEMFRRSAFPKAAVKRLMQTITGCSVSQNVVIAMSGIAKVFVGEIVEEA 169
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BLAST of mRNA_M-pyrifera_M_contig117969.3725.1 vs. uniprot
Match: UPI0008118C26 (transcription initiation factor TFIID subunit 11 n=2 Tax=Rhagoletis TaxID=28609 RepID=UPI0008118C26)

HSP 1 Score: 65.5 bits (158), Expect = 5.970e-11
Identity = 39/90 (43.33%), Postives = 59/90 (65.56%), Query Frame = 1 
Query:    1 ADVSESIKVSELLPTSIESVAAQTEPMRALLDQFTTEQMERFEKFRSSSLAKAQVKKLMARAIGGAVTDNMLIVMSGVTKVWVGELVEEA 270
            AD+S+ +  S+   T  E    + E M+ L+  FT EQ++R+E +R S+  KA VK+LM    G +V+ N++I MSG+ KV+VGE+VEEA
Sbjct:   81 ADLSDDLP-SKKQKTKKEMEEEEREKMQVLVSNFTEEQLDRYEMYRRSAFPKAAVKRLMQTITGCSVSQNVVIAMSGIAKVFVGEIVEEA 169
[Close]
BLAST of mRNA_M-pyrifera_M_contig117969.3725.1 vs. uniprot
Match: W8B3A4_CERCA ((Mediterranean fruit fly) hypothetical protein n=1 Tax=Ceratitis capitata TaxID=7213 RepID=W8B3A4_CERCA)

HSP 1 Score: 64.7 bits (156), Expect = 1.170e-10
Identity = 35/76 (46.05%), Postives = 51/76 (67.11%), Query Frame = 1 
Query:   43 TSIESVAAQTEPMRALLDQFTTEQMERFEKFRSSSLAKAQVKKLMARAIGGAVTDNMLIVMSGVTKVWVGELVEEA 270
            T  E    + E M+ L+  FT EQ++R+E +R S+  KA VK+LM    G +V+ N++I MSG+ KV+VGE+VEEA
Sbjct:   94 TKKEMEEEEREKMQVLVSNFTEEQLDRYEMYRRSAFPKAAVKRLMQTITGCSVSQNVVIAMSGIAKVFVGEIVEEA 169
[Close]
BLAST of mRNA_M-pyrifera_M_contig117969.3725.1 vs. uniprot
Match: A0A6P4ZVT3_BRABE (transcription initiation factor TFIID subunit 11-like n=1 Tax=Branchiostoma belcheri TaxID=7741 RepID=A0A6P4ZVT3_BRABE)

HSP 1 Score: 64.3 bits (155), Expect = 1.460e-10
Identity = 32/85 (37.65%), Postives = 58/85 (68.24%), Query Frame = 1 
Query:   16 SIKVSELLPTSIESVAAQTEPMRALLDQFTTEQMERFEKFRSSSLAKAQVKKLMARAIGGAVTDNMLIVMSGVTKVWVGELVEEA 270
            S++  E   + +E +  + + M+ L+  F+ EQ+ R+E FR S+  KA +K++M +  G +V+ N++I M+G++KV+VGE+VEEA
Sbjct:   79 SVEEGETRKSKMEQLEEERQKMQVLVASFSEEQLNRYEMFRRSAFPKASIKRIMQQMTGTSVSQNVVIAMAGISKVFVGEVVEEA 163
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig117969.3725.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A8J9W3M0_BRALA3.470e-1138.82TAF11 protein n=1 Tax=Branchiostoma lanceolatum Ta... [more]
UPI0016035AC53.470e-1138.82transcription initiation factor TFIID subunit 11-l... [more]
J9JZX6_ACYPI4.180e-1145.71TAFII28 domain-containing protein n=6 Tax=Aphidida... [more]
A0A6G0U7P9_APHGL4.180e-1145.71TAFII28 domain-containing protein n=6 Tax=Aphidida... [more]
A0A1A9Y512_GLOFF4.640e-1146.15TAFII28 domain-containing protein n=5 Tax=Glossina... [more]
A0A1A9WK97_9MUSC4.640e-1146.15TAFII28 domain-containing protein n=1 Tax=Glossina... [more]
U5EQV7_9DIPT5.970e-1151.52Putative transcription initiation factor tfiid sub... [more]
UPI0008118C265.970e-1143.33transcription initiation factor TFIID subunit 11 n... [more]
W8B3A4_CERCA1.170e-1046.05(Mediterranean fruit fly) hypothetical protein n=1... [more]
A0A6P4ZVT3_BRABE1.460e-1037.65transcription initiation factor TFIID subunit 11-l... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig117969contigM-pyrifera_M_contig117969:2..274 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeArthropoda
Seed ortholog score67.8
Seed ortholog evalue3e-09
Seed eggNOG ortholog7029.ACYPI006026-PA
Preferred nameTaf11
KEGG koko:K03135
KEGG Pathwayko03022,map03022
Hectar predicted targeting categoryother localisation
GOsGO:0000428,GO:0003674,GO:0003712,GO:0003713,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005667,GO:0005669,GO:0005737,GO:0006139,GO:0006351,GO:0006352,GO:0006366,GO:0006367,GO:0006725,GO:0006807,GO:0008134,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009889,GO:0009891,GO:0009893,GO:0009987,GO:0010467,GO:0010468,GO:0010556,GO:0010557,GO:0010604,GO:0016070,GO:0016591,GO:0018130,GO:0019219,GO:0019222,GO:0019438,GO:0030880,GO:0031323,GO:0031325,GO:0031326,GO:0031328,GO:0031334,GO:0031974,GO:0031981,GO:0032459,GO:0032461,GO:0032774,GO:0032991,GO:0034641,GO:0034645,GO:0034654,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0043254,GO:0044087,GO:0044089,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044271,GO:0044422,GO:0044424,GO:0044428,GO:0044446,GO:0044451,GO:0044464,GO:0044798,GO:0045935,GO:0046483,GO:0048518,GO:0048522,GO:0050789,GO:0050794,GO:0051128,GO:0051130,GO:0051171,GO:0051173,GO:0051252,GO:0051254,GO:0055029,GO:0060147,GO:0060148,GO:0060255,GO:0060966,GO:0060968,GO:0061695,GO:0065007,GO:0070013,GO:0070578,GO:0071704,GO:0080090,GO:0090304,GO:0090575,GO:0097659,GO:0140110,GO:1900368,GO:1900370,GO:1901090,GO:1901092,GO:1901360,GO:1901362,GO:1901576,GO:1902494,GO:1902555,GO:1902680,GO:1903506,GO:1903508,GO:1905348,GO:1990234,GO:2001141
EggNOG free text desc.hTAFII28-like protein conserved region
EggNOG OGs39ZUY@33154,3BPDS@33208,3D6FZ@33213,3EAM3@33342,3SMJS@50557,41Z5W@6656,COG5251@1,KOG3219@2759
COG Functional cat.J
Best tax levelParaneoptera
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko03021
Exons1
Model size273
Cds size273
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815698.5805469-CDS-M-pyrifera_M_contig117969:1..2741622815698.5805469-CDS-M-pyrifera_M_contig117969:1..274Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig117969 2..274 -
1692277527.409737-CDS-M-pyrifera_M_contig117969:1..2741692277527.409737-CDS-M-pyrifera_M_contig117969:1..274Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig117969 2..274 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig117969.3725.1prot_M-pyrifera_M_contig117969.3725.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig117969 2..274 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig117969.3725.1

>prot_M-pyrifera_M_contig117969.3725.1 ID=prot_M-pyrifera_M_contig117969.3725.1|Name=mRNA_M-pyrifera_M_contig117969.3725.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=91bp
ADVSESIKVSELLPTSIESVAAQTEPMRALLDQFTTEQMERFEKFRSSSL
AKAQVKKLMARAIGGAVTDNMLIVMSGVTKVWVGELVEEAV
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mRNA from alignment at M-pyrifera_M_contig117969:2..274-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig117969.3725.1 ID=mRNA_M-pyrifera_M_contig117969.3725.1|Name=mRNA_M-pyrifera_M_contig117969.3725.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=273bp|location=Sequence derived from alignment at M-pyrifera_M_contig117969:2..274- (Macrocystis pyrifera P11B4 male)
GCAGACGTGTCGGAGTCGATCAAGGTGTCGGAGCTGCTGCCGACGAGCAT
CGAGAGCGTTGCGGCGCAGACGGAGCCGATGCGCGCGCTGCTGGACCAGT
TCACGACAGAGCAGATGGAGCGCTTCGAGAAGTTCCGCTCCTCCTCCCTG
GCAAAGGCGCAAGTGAAGAAGCTCATGGCTCGCGCCATCGGCGGCGCCGT
CACAGACAACATGCTCATCGTCATGTCTGGCGTCACCAAGGTGTGGGTGG
GCGAGCTCGTCGAGGAGGCAGTG
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig117969:2..274-

>mRNA_M-pyrifera_M_contig117969.3725.1 ID=mRNA_M-pyrifera_M_contig117969.3725.1|Name=mRNA_M-pyrifera_M_contig117969.3725.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=546bp|location=Sequence derived from alignment at M-pyrifera_M_contig117969:2..274- (Macrocystis pyrifera P11B4 male)
GCAGACGTGTCGGAGTCGATCAAGGTGTCGGAGCTGCTGCCGACGAGCAT
CGAGAGCGTTGCGGCGCAGACGGAGCCGATGCGCGCGCTGCTGGACCAGT
TCACGACAGAGCAGATGGAGCGCTTCGAGAAGTTCCGCTCCTCCTCCCTG
GCAAAGGCGCAAGTGAAGAAGCTCATGGCTCGCGCCATCGGCGGCGCCGT
CACAGACAACATGCTCATCGTCATGTCTGGCGTCACCAAGGTGTGGGTGG
GCGAGCTCGTCGAGGAGGCAGTGGCAGACGTGTCGGAGTCGATCAAGGTG
TCGGAGCTGCTGCCGACGAGCATCGAGAGCGTTGCGGCGCAGACGGAGCC
GATGCGCGCGCTGCTGGACCAGTTCACGACAGAGCAGATGGAGCGCTTCG
AGAAGTTCCGCTCCTCCTCCCTGGCAAAGGCGCAAGTGAAGAAGCTCATG
GCTCGCGCCATCGGCGGCGCCGTCACAGACAACATGCTCATCGTCATGTC
TGGCGTCACCAAGGTGTGGGTGGGCGAGCTCGTCGAGGAGGCAGTG
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