mRNA_M-pyrifera_M_contig117965.3723.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig117965.3723.1
Unique NamemRNA_M-pyrifera_M_contig117965.3723.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig117965.3723.1 vs. uniprot
Match: A0A7S4I2Q2_9EUKA (Hypothetical protein n=1 Tax=Vannella sp. CB-2014 TaxID=1487602 RepID=A0A7S4I2Q2_9EUKA)

HSP 1 Score: 101 bits (252), Expect = 4.330e-24
Identity = 42/69 (60.87%), Postives = 56/69 (81.16%), Query Frame = 1
Query:   22 WFGVGILRGKTEANHGTLWRSAYQLGASMAFSIGARYNKEKENRADTFHLWSKLPFMQFPDWVTFSKSA 228
            WFG+GI+RGK   NHGTLWRSAYQLGAS AFS+GARY+K +E+ A+    W+K+PF+Q+PD+  F +S+
Sbjct:  165 WFGIGIVRGKCAPNHGTLWRSAYQLGASYAFSVGARYSKSEEDIANVCKAWAKIPFIQYPDFGNFMESS 233          
BLAST of mRNA_M-pyrifera_M_contig117965.3723.1 vs. uniprot
Match: A0A2V3J4I6_9FLOR (SpoU_methylase domain-containing protein n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3J4I6_9FLOR)

HSP 1 Score: 84.7 bits (208), Expect = 5.870e-18
Identity = 34/76 (44.74%), Postives = 51/76 (67.11%), Query Frame = 1
Query:    1 QVGANGSWFGVGILRGKTEANHGTLWRSAYQLGASMAFSIGARYNKEKENRADTFHLWSKLPFMQFPDWVTFSKSA 228
            Q    G WFG+GI+RGK+ +NHG+LWRSA Q GA++ F+IG RY+K+ E  AD +    ++P M + +W T  ++ 
Sbjct:  126 QTSLTGCWFGIGIIRGKSASNHGSLWRSALQFGAALTFTIGKRYDKKVEGCADMYKTHRQIPCMAYENWETMLRNC 201          
BLAST of mRNA_M-pyrifera_M_contig117965.3723.1 vs. uniprot
Match: A0A7S0SHW0_9CHLO (Hypothetical protein (Fragment) n=1 Tax=Mantoniella antarctica TaxID=81844 RepID=A0A7S0SHW0_9CHLO)

HSP 1 Score: 80.1 bits (196), Expect = 1.870e-16
Identity = 37/70 (52.86%), Postives = 46/70 (65.71%), Query Frame = 1
Query:   10 ANGSWFGVGILRGKTEANHGTLWRSAYQLGASMAFSIGARYNKEKENRADTFHLWSKLPFMQFPDWVTFS 219
            A   ++G+GI  GKTEAN GTLWRSA+QLGA+  FS+GAR+ K     ADT   W+ LP   F DW  F+
Sbjct:  110 AKDGFYGIGIYGGKTEANQGTLWRSAWQLGAAFTFSVGARFTKTS---ADTTKTWTTLPAYTFKDWGVFA 176          
BLAST of mRNA_M-pyrifera_M_contig117965.3723.1 vs. uniprot
Match: R1DIM2_EMIHU (SpoU_methylase domain-containing protein n=3 Tax=Emiliania huxleyi TaxID=2903 RepID=R1DIM2_EMIHU)

HSP 1 Score: 79.7 bits (195), Expect = 5.100e-16
Identity = 34/73 (46.58%), Postives = 48/73 (65.75%), Query Frame = 1
Query:   10 ANGSWFGVGILRGKTEANHGTLWRSAYQLGASMAFSIGARYNKEKENRADTFHLWSKLPFMQFPDWVTFSKSA 228
            A G +FG+G++  K +AN GTLWRSAYQLGAS+ F++G RY   K    DT H   ++PF++  DW  F ++ 
Sbjct:  149 AKGGYFGIGVVGAKNQANLGTLWRSAYQLGASLLFTVGTRY---KNQPTDTVHAIQRVPFLELDDWNAFVETC 218          
BLAST of mRNA_M-pyrifera_M_contig117965.3723.1 vs. uniprot
Match: A0A7S2EPM3_TRICV (Hypothetical protein (Fragment) n=1 Tax=Trieres chinensis TaxID=1514140 RepID=A0A7S2EPM3_TRICV)

HSP 1 Score: 75.1 bits (183), Expect = 6.940e-16
Identity = 33/64 (51.56%), Postives = 46/64 (71.88%), Query Frame = 1
Query:   16 GSWFGVGILRGKTEANHGTLWRSAYQLGASMAFSIGARYNKEKENRADTFHLWSKLPFMQFPDW 207
            G +FG+GI+  KTE N GTLWRSAYQLGASM ++IGARY   + +  DT ++ +++P  +  DW
Sbjct:   45 GGYFGIGIINPKTEENVGTLWRSAYQLGASMIYTIGARY---RPSSTDTLNVPARVPLFELDDW 105          
BLAST of mRNA_M-pyrifera_M_contig117965.3723.1 vs. uniprot
Match: C1FHA7_MICCC (SpoU_methylase domain-containing protein n=1 Tax=Micromonas commoda (strain RCC299 / NOUM17 / CCMP2709) TaxID=296587 RepID=C1FHA7_MICCC)

HSP 1 Score: 78.6 bits (192), Expect = 1.310e-15
Identity = 34/69 (49.28%), Postives = 46/69 (66.67%), Query Frame = 1
Query:   22 WFGVGILRGKTEANHGTLWRSAYQLGASMAFSIGARYNKEKENRADTFHLWSKLPFMQFPDWVTFSKSA 228
            +FG+GI+ GK EAN GTLWRSAYQLGA+  +++GAR+ K     +DT   W+ LP     +W  F+ SA
Sbjct:  134 YFGIGIVGGKNEANQGTLWRSAYQLGAAFTYTVGARFEKSS---SDTTKTWTNLPMYSHDNWNAFAASA 199          
BLAST of mRNA_M-pyrifera_M_contig117965.3723.1 vs. uniprot
Match: A4S2L9_OSTLU (SpoU_methylase domain-containing protein n=1 Tax=Ostreococcus lucimarinus (strain CCE9901) TaxID=436017 RepID=A4S2L9_OSTLU)

HSP 1 Score: 77.0 bits (188), Expect = 4.820e-15
Identity = 35/75 (46.67%), Postives = 47/75 (62.67%), Query Frame = 1
Query:    4 VGANGSWFGVGILRGKTEANHGTLWRSAYQLGASMAFSIGARYNKEKENRADTFHLWSKLPFMQFPDWVTFSKSA 228
            VG    +FG+GI  GK   N GTLWRSAYQLGA+ AF IG R+ KE    +DT   W+++P  ++ DW  F + +
Sbjct:  132 VGEQNGYFGIGIYNGKNTQNLGTLWRSAYQLGAAFAFVIGRRFKKEA---SDTPKSWTQIPTFEYSDWDDFVRKS 203          
BLAST of mRNA_M-pyrifera_M_contig117965.3723.1 vs. uniprot
Match: A0A7S1WGM2_ALECA (Hypothetical protein n=1 Tax=Alexandrium catenella TaxID=2925 RepID=A0A7S1WGM2_ALECA)

HSP 1 Score: 75.5 bits (184), Expect = 5.060e-15
Identity = 33/69 (47.83%), Postives = 44/69 (63.77%), Query Frame = 1
Query:   22 WFGVGILRGKTEANHGTLWRSAYQLGASMAFSIGARYNKEKENRADTFHLWSKLPFMQFPDWVTFSKSA 228
            +FG+GI RGKT+ NHG LWRSAYQLGAS  F++GARY    +  +D +   +  P   F D+  F + A
Sbjct:   45 FFGIGIHRGKTQTNHGLLWRSAYQLGASFTFTVGARYEPRLDGLSDRYRCAASCPSWSFADFGDFVQHA 113          
BLAST of mRNA_M-pyrifera_M_contig117965.3723.1 vs. uniprot
Match: A0A7S0GVC7_MICPS (Hypothetical protein (Fragment) n=1 Tax=Micromonas pusilla TaxID=38833 RepID=A0A7S0GVC7_MICPS)

HSP 1 Score: 73.9 bits (180), Expect = 6.740e-15
Identity = 33/74 (44.59%), Postives = 49/74 (66.22%), Query Frame = 1
Query:    7 GANGSWFGVGILRGKTEANHGTLWRSAYQLGASMAFSIGARYNKEKENRADTFHLWSKLPFMQFPDWVTFSKSA 228
            GAN  +FGVG+++ K EAN GTLWRSA+QLGA   F++G R+  E    +DT     ++P  +  DW +F+K++
Sbjct:   69 GANAGFFGVGVVKPKHEANVGTLWRSAWQLGAGFIFTVGTRFKYEA---SDTTQAHKQIPLFKHEDWESFAKAS 139          
BLAST of mRNA_M-pyrifera_M_contig117965.3723.1 vs. uniprot
Match: A0A7S1RIT7_ALECA (Hypothetical protein n=1 Tax=Alexandrium catenella TaxID=2925 RepID=A0A7S1RIT7_ALECA)

HSP 1 Score: 75.5 bits (184), Expect = 1.140e-14
Identity = 33/69 (47.83%), Postives = 44/69 (63.77%), Query Frame = 1
Query:   22 WFGVGILRGKTEANHGTLWRSAYQLGASMAFSIGARYNKEKENRADTFHLWSKLPFMQFPDWVTFSKSA 228
            +FG+GI RGKT+ NHG LWRSAYQLGAS  F++GARY    +  +D +   +  P   F D+  F + A
Sbjct:  100 FFGIGIHRGKTQTNHGLLWRSAYQLGASFTFTVGARYEPRLDGLSDRYRCAASCPSWSFADFGDFVQHA 168          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig117965.3723.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A7S4I2Q2_9EUKA4.330e-2460.87Hypothetical protein n=1 Tax=Vannella sp. CB-2014 ... [more]
A0A2V3J4I6_9FLOR5.870e-1844.74SpoU_methylase domain-containing protein n=1 Tax=G... [more]
A0A7S0SHW0_9CHLO1.870e-1652.86Hypothetical protein (Fragment) n=1 Tax=Mantoniell... [more]
R1DIM2_EMIHU5.100e-1646.58SpoU_methylase domain-containing protein n=3 Tax=E... [more]
A0A7S2EPM3_TRICV6.940e-1651.56Hypothetical protein (Fragment) n=1 Tax=Trieres ch... [more]
C1FHA7_MICCC1.310e-1549.28SpoU_methylase domain-containing protein n=1 Tax=M... [more]
A4S2L9_OSTLU4.820e-1546.67SpoU_methylase domain-containing protein n=1 Tax=O... [more]
A0A7S1WGM2_ALECA5.060e-1547.83Hypothetical protein n=1 Tax=Alexandrium catenella... [more]
A0A7S0GVC7_MICPS6.740e-1544.59Hypothetical protein (Fragment) n=1 Tax=Micromonas... [more]
A0A7S1RIT7_ALECA1.140e-1447.83Hypothetical protein n=1 Tax=Alexandrium catenella... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig117965contigM-pyrifera_M_contig117965:323..550 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score77.8
Seed ortholog evalue2.4e-12
Seed eggNOG ortholog2903.EOD35363
Hectar predicted targeting categoryother localisation
EggNOG free text desc.SpoU rRNA Methylase family
EggNOG OGs2S173@2759,COG0219@1
COG Functional cat.J
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons1
Model size228
Cds size228
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815698.5025353-CDS-M-pyrifera_M_contig117965:322..5501622815698.5025353-CDS-M-pyrifera_M_contig117965:322..550Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig117965 323..550 +
1692277527.3805923-CDS-M-pyrifera_M_contig117965:322..5501692277527.3805923-CDS-M-pyrifera_M_contig117965:322..550Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig117965 323..550 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig117965.3723.1prot_M-pyrifera_M_contig117965.3723.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig117965 323..550 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig117965.3723.1

>prot_M-pyrifera_M_contig117965.3723.1 ID=prot_M-pyrifera_M_contig117965.3723.1|Name=mRNA_M-pyrifera_M_contig117965.3723.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=76bp
QVGANGSWFGVGILRGKTEANHGTLWRSAYQLGASMAFSIGARYNKEKEN
RADTFHLWSKLPFMQFPDWVTFSKSA
back to top

mRNA from alignment at M-pyrifera_M_contig117965:323..550+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig117965.3723.1 ID=mRNA_M-pyrifera_M_contig117965.3723.1|Name=mRNA_M-pyrifera_M_contig117965.3723.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=228bp|location=Sequence derived from alignment at M-pyrifera_M_contig117965:323..550+ (Macrocystis pyrifera P11B4 male)
CAAGTGGGAGCCAACGGGAGCTGGTTTGGTGTTGGCATTCTCCGAGGGAA GACAGAAGCCAACCATGGCACCCTCTGGCGCTCTGCCTATCAATTGGGGG CCTCGATGGCGTTCAGCATTGGCGCTCGGTACAACAAAGAGAAAGAGAAC AGGGCAGACACGTTCCACCTCTGGTCAAAGCTCCCATTTATGCAGTTCCC TGACTGGGTGACGTTCTCCAAGAGTGCC
back to top

Coding sequence (CDS) from alignment at M-pyrifera_M_contig117965:323..550+

>mRNA_M-pyrifera_M_contig117965.3723.1 ID=mRNA_M-pyrifera_M_contig117965.3723.1|Name=mRNA_M-pyrifera_M_contig117965.3723.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=456bp|location=Sequence derived from alignment at M-pyrifera_M_contig117965:323..550+ (Macrocystis pyrifera P11B4 male)
CAAGTGGGAGCCAACGGGAGCTGGTTTGGTGTTGGCATTCTCCGAGGGAA
GACAGAAGCCAACCATGGCACCCTCTGGCGCTCTGCCTATCAATTGGGGG
CCTCGATGGCGTTCAGCATTGGCGCTCGGTACAACAAAGAGAAAGAGAAC
AGGGCAGACACGTTCCACCTCTGGTCAAAGCTCCCATTTATGCAGTTCCC
TGACTGGGTGACGTTCTCCAAGAGTGCCCAAGTGGGAGCCAACGGGAGCT
GGTTTGGTGTTGGCATTCTCCGAGGGAAGACAGAAGCCAACCATGGCACC
CTCTGGCGCTCTGCCTATCAATTGGGGGCCTCGATGGCGTTCAGCATTGG
CGCTCGGTACAACAAAGAGAAAGAGAACAGGGCAGACACGTTCCACCTCT
GGTCAAAGCTCCCATTTATGCAGTTCCCTGACTGGGTGACGTTCTCCAAG
AGTGCC
back to top