mRNA_M-pyrifera_M_contig117964.3722.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig117964.3722.1
Unique NamemRNA_M-pyrifera_M_contig117964.3722.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig117964.3722.1 vs. uniprot
Match: A0A8J4GBS2_9CHLO (V-type proton ATPase subunit C n=1 Tax=Volvox reticuliferus TaxID=1737510 RepID=A0A8J4GBS2_9CHLO)

HSP 1 Score: 81.3 bits (199), Expect = 2.390e-15
Identity = 54/143 (37.76%), Postives = 76/143 (53.15%), Query Frame = 1
Query:   19 VYWCVSVEAEKGREDAVFQRLSQLGGEAATCSRFA--VPQLRVGTLDMLMSLSDSLVKTDHTVENVTRKIGQYLTALRDTLNEGRSSHARADLTVSVQHDDGRSLTLGDDQYLQKFTWIERRFPK----KMTCDALAKRLSEV 429
            VYW VS+     R DA+++ L +    +  C+ F   +P+LR+GTLD LM+LSD L KT + VE V  K+       R  +NE   + A A LTV     +G S     D Y+Q+F W E +FP     K T D +A+ +S V
Sbjct:    2 VYWLVSLHLHNKRRDAIWELLQERTSASMLCTNFKLDIPELRIGTLDSLMALSDELSKTSNMVEGVIAKV-------RRQINESGGAKALATLTV-----EGAST----DVYVQRFKWDEAKFPTRRLLKETVDKMAELVSRV 128          
BLAST of mRNA_M-pyrifera_M_contig117964.3722.1 vs. uniprot
Match: A0A7S4HZY1_9EUKA (V-type proton ATPase subunit C n=1 Tax=Vannella sp. CB-2014 TaxID=1487602 RepID=A0A7S4HZY1_9EUKA)

HSP 1 Score: 80.5 bits (197), Expect = 5.040e-15
Identity = 50/136 (36.76%), Postives = 75/136 (55.15%), Query Frame = 1
Query:   22 YWCVSVEAEKGREDAVFQRLSQLGGEAATCSRFAVP-QLRVGTLDMLMSLSDSLVKTDHTVENVTRKIGQYLTALRDTLNEGRSSHARADLTVSVQHDDGRSLTLGDDQYLQKFTWIERRFPKKMTCDALAKRLSE 426
            YW +SV ++  RE A +  + Q     A CS+F VP  LRVGTLD LMS+SD LVK DH VE+  +KIGQ +  LR+T  E  +      + +++    G SL+     Y+++F W   ++  +++   L  R  E
Sbjct:    7 YWIISVPSKPSRESA-YSSIQQCTNGLADCSKFNVPTNLRVGTLDSLMSMSDELVKVDHMVEHTAKKIGQQIYTLRETKPEPGT------IFLNIG---GASLS----DYIKRFQWDTAKYSVRLSVSDLTNRFQE 128          
BLAST of mRNA_M-pyrifera_M_contig117964.3722.1 vs. uniprot
Match: D9CJ64_VOLCA (V-type proton ATPase subunit C n=1 Tax=Volvox carteri f. nagariensis TaxID=3068 RepID=D9CJ64_VOLCA)

HSP 1 Score: 78.2 bits (191), Expect = 3.080e-14
Identity = 48/139 (34.53%), Postives = 77/139 (55.40%), Query Frame = 1
Query:   19 VYWCVSVEAEKGREDAVFQRLSQLGGEAATCS--RFAVPQLRVGTLDMLMSLSDSLVKTDHTVENVTRKIGQYLTALRDTLNEGRSSHARADLTVSVQHDDGRSLTLGDDQYLQKFTWIERRFPKKMTCDALAKRLSEV 429
            VYW VS++  + R+DAV++ L +    +  C+  +  VP+LR+GTLD L++LSD L K+ +T+E V  K+       R  +NE     A A LTV     +G S     D Y+Q+F W E RFP +     +  +++++
Sbjct:    2 VYWLVSLKLHEKRKDAVWELLQERTSASMLCTTHKLDVPELRIGTLDSLLALSDELSKSSNTIEAVLAKV-------RRQINESGGVKALAGLTV-----EGMST----DVYVQRFRWDEARFPTRRVLKEMVDKMTDL 124          
BLAST of mRNA_M-pyrifera_M_contig117964.3722.1 vs. uniprot
Match: Q9XXU9-2 (Isoform b of V-type proton ATPase subunit C n=1 Tax=Caenorhabditis elegans TaxID=6239 RepID=Q9XXU9-2)

HSP 1 Score: 73.2 bits (178), Expect = 7.880e-14
Identity = 42/100 (42.00%), Postives = 61/100 (61.00%), Query Frame = 1
Query:   22 YWCVSVEAEKGREDAVFQRLSQLGGEAATCSRFAVPQLRVGTLDMLMSLSDSLVKTDHTVENVTRKIGQYLTALRDTLNEGRSSHARADLTVSVQHDDGR 321
            YW +SV  EKG  DA + +L++  G  +T S++ +P L+VGTLD L+ LSD L K D + E V RK+ QY T   + L E +S  A  +L +  +H+D R
Sbjct:    9 YWLISVPGEKGANDA-WDKLNRSTGNTSTNSKYLIPDLKVGTLDQLVGLSDDLSKLDTSAEAVIRKLVQYFT---EVLEEDKSKIAE-NLVIGNRHEDVR 103          
BLAST of mRNA_M-pyrifera_M_contig117964.3722.1 vs. uniprot
Match: VATC_CAEEL (V-type proton ATPase subunit C n=9 Tax=Caenorhabditis TaxID=6237 RepID=VATC_CAEEL)

HSP 1 Score: 76.3 bits (186), Expect = 1.560e-13
Identity = 49/143 (34.27%), Postives = 76/143 (53.15%), Query Frame = 1
Query:   22 YWCVSVEAEKGREDAVFQRLSQLGGEAATCSRFAVPQLRVGTLDMLMSLSDSLVKTDHTVENVTRKIGQYLTALRDTLNEGRSSHARADLTVSVQHDDGRSLTLGDDQ---YLQKFTWIERRFPKKMTCDALA----KRLSEV 429
            YW +SV  EKG  DA + +L++  G  +T S++ +P L+VGTLD L+ LSD L K D + E V RK+ QY T   + L E +S  A              +L +G+     Y+ KF W   ++P K +   L+    K++S++
Sbjct:    9 YWLISVPGEKGANDA-WDKLNRSTGNTSTNSKYLIPDLKVGTLDQLVGLSDDLSKLDTSAEAVIRKLVQYFT---EVLEEDKSKIAE-------------NLVIGNKDMKTYVTKFQWEGAKYPLKQSLKVLSEIIGKQISQI 134          
BLAST of mRNA_M-pyrifera_M_contig117964.3722.1 vs. uniprot
Match: A0A016TUK9_9BILA (V-type proton ATPase subunit C n=8 Tax=Ancylostomatidae TaxID=33278 RepID=A0A016TUK9_9BILA)

HSP 1 Score: 76.3 bits (186), Expect = 1.840e-13
Identity = 48/143 (33.57%), Postives = 74/143 (51.75%), Query Frame = 1
Query:    1 MSKGKDVYWCVSVEAEKGREDAVFQRLSQLGGEAATCSRFAVPQLRVGTLDMLMSLSDSLVKTDHTVENVTRKIGQYLTALRDTLNEGRSSHARADLTVSVQHDDGRSLTLGDDQYLQKFTWIERRFPKKMTCDALAKRLSEV 429
            MS     YW +S   EKG  DA + +L++     +  S+F +P L+VGTLD L+ LSD L K D T E VTRK+ QY     D L + RS  A     + + + D ++       Y+ +F W   ++P K +   L++ + +V
Sbjct:    1 MSVSSGEYWLISAPGEKGANDA-WDKLNRATSNLSNNSKFNIPDLKVGTLDQLVGLSDDLSKLDSTAEAVTRKLVQYF---GDVLEDDRSKLAE---NLLINNKDIKT-------YVTRFQWEGAKYPLKQSLKVLSEIIGKV 129          
BLAST of mRNA_M-pyrifera_M_contig117964.3722.1 vs. uniprot
Match: A0A183G630_HELPZ (V-type proton ATPase subunit C n=3 Tax=Strongylida TaxID=6308 RepID=A0A183G630_HELPZ)

HSP 1 Score: 75.9 bits (185), Expect = 2.330e-13
Identity = 47/143 (32.87%), Postives = 77/143 (53.85%), Query Frame = 1
Query:    1 MSKGKDVYWCVSVEAEKGREDAVFQRLSQLGGEAATCSRFAVPQLRVGTLDMLMSLSDSLVKTDHTVENVTRKIGQYLTALRDTLNEGRSSHARADLTVSVQHDDGRSLTLGDDQYLQKFTWIERRFPKKMTCDALAKRLSEV 429
            MS     YW +S   EKG  DA + +L++     ++ S+F +P L+VGTLD L+ LSD L K D+T E VTRK+ QY     + L + +S  A  +L ++     G+ +      Y+ KF W   ++P K +   L++ + ++
Sbjct:    1 MSVSSGEYWLISAPGEKGANDA-WDKLNRATSNLSSNSKFNIPDLKVGTLDQLVGLSDDLGKLDNTAEGVTRKLVQYF---GEVLEDDKSKLAE-NLLIN-----GKDIKT----YVTKFQWEGAKYPLKQSLKVLSEIIQDI 129          
BLAST of mRNA_M-pyrifera_M_contig117964.3722.1 vs. uniprot
Match: A0A0N4Y3X5_NIPBR (V-type proton ATPase subunit C n=2 Tax=Strongylida TaxID=6308 RepID=A0A0N4Y3X5_NIPBR)

HSP 1 Score: 75.1 bits (183), Expect = 4.430e-13
Identity = 48/137 (35.04%), Postives = 71/137 (51.82%), Query Frame = 1
Query:    1 MSKGKDVYWCVSVEAEKGREDAVFQRLSQLGGEAATCSRFAVPQLRVGTLDMLMSLSDSLVKTDHTVENVTRKIGQYLTALRDTLNEGRSSHARADLTVSVQHDDGRSLTLGDDQYLQKFTWIERRFPKKMTCDALA 411
            MS     YW +S   EKG  DA + +L++     +  S+F +P L+VGTLD L+ LSD L K D T E VTRK+ QY     + L + RS  A  +L ++     G+ +      Y+ KF W   ++P K +   L+
Sbjct:    1 MSVSSGEYWLISAPGEKGANDA-WDKLNRATSNISNNSKFNIPDLKVGTLDQLVGLSDDLTKLDTTAEGVTRKLVQYF---GEVLEDDRSKLAE-NLLIN-----GKDMKT----YVTKFQWEGAKYPLKQSLKVLS 123          
BLAST of mRNA_M-pyrifera_M_contig117964.3722.1 vs. uniprot
Match: A0A0N4WME7_HAEPC (V-type proton ATPase subunit C n=2 Tax=Haemonchus TaxID=6288 RepID=A0A0N4WME7_HAEPC)

HSP 1 Score: 73.2 bits (178), Expect = 1.960e-12
Identity = 46/137 (33.58%), Postives = 69/137 (50.36%), Query Frame = 1
Query:    1 MSKGKDVYWCVSVEAEKGREDAVFQRLSQLGGEAATCSRFAVPQLRVGTLDMLMSLSDSLVKTDHTVENVTRKIGQYLTALRDTLNEGRSSHARADLTVSVQHDDGRSLTLGDDQYLQKFTWIERRFPKKMTCDALA 411
            MS     YW +S   EKG  DA + +L++     +  S+F +P L+VGTLD L+ LSD L K D T E VTRK+ QY     + L + R   A     + + + D ++       Y+ KF W   ++P K +   L+
Sbjct:    1 MSVSSGEYWLISAPGEKGPNDA-WDKLNRATSNLSNNSKFNIPDLKVGTLDQLVGLSDDLSKLDSTAEAVTRKLVQYF---GEVLEDDRGKLAE---NLQINNKDIKT-------YVTKFQWEGAKYPLKQSLKVLS 123          
BLAST of mRNA_M-pyrifera_M_contig117964.3722.1 vs. uniprot
Match: A0A0D8XU66_DICVI (V-type proton ATPase subunit C n=1 Tax=Dictyocaulus viviparus TaxID=29172 RepID=A0A0D8XU66_DICVI)

HSP 1 Score: 70.1 bits (170), Expect = 2.830e-11
Identity = 46/137 (33.58%), Postives = 68/137 (49.64%), Query Frame = 1
Query:    1 MSKGKDVYWCVSVEAEKGREDAVFQRLSQLGGEAATCSRFAVPQLRVGTLDMLMSLSDSLVKTDHTVENVTRKIGQYLTALRDTLNEGRSSHARADLTVSVQHDDGRSLTLGDDQYLQKFTWIERRFPKKMTCDALA 411
            MS     YW +S   EKG  DA + +L++     +T  +F +P L+VGTLD L+ LSD L K D   E V RK+ QY     D L + RS  A     + + + D ++       Y+ KF W   ++P K +   L+
Sbjct:  152 MSAMSGEYWLLSAPGEKGANDA-WDKLNRATSNLSTNYKFNIPDLKVGTLDQLVGLSDDLGKLDSAAEAVARKLVQYF---GDVLEDDRSKLAE---NLLINNKDMKT-------YVTKFQWEGAKYPLKQSLKVLS 274          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig117964.3722.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A8J4GBS2_9CHLO2.390e-1537.76V-type proton ATPase subunit C n=1 Tax=Volvox reti... [more]
A0A7S4HZY1_9EUKA5.040e-1536.76V-type proton ATPase subunit C n=1 Tax=Vannella sp... [more]
D9CJ64_VOLCA3.080e-1434.53V-type proton ATPase subunit C n=1 Tax=Volvox cart... [more]
Q9XXU9-27.880e-1442.00Isoform b of V-type proton ATPase subunit C n=1 Ta... [more]
VATC_CAEEL1.560e-1334.27V-type proton ATPase subunit C n=9 Tax=Caenorhabdi... [more]
A0A016TUK9_9BILA1.840e-1333.57V-type proton ATPase subunit C n=8 Tax=Ancylostoma... [more]
A0A183G630_HELPZ2.330e-1332.87V-type proton ATPase subunit C n=3 Tax=Strongylida... [more]
A0A0N4Y3X5_NIPBR4.430e-1335.04V-type proton ATPase subunit C n=2 Tax=Strongylida... [more]
A0A0N4WME7_HAEPC1.960e-1233.58V-type proton ATPase subunit C n=2 Tax=Haemonchus ... [more]
A0A0D8XU66_DICVI2.830e-1133.58V-type proton ATPase subunit C n=1 Tax=Dictyocaulu... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig117964contigM-pyrifera_M_contig117964:105..533 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeNematoda
Seed ortholog score77.0
Seed ortholog evalue7.8e-12
Seed eggNOG ortholog31234.CRE02603
KEGG koko:K02148
KEGG TC3.A.2.2
KEGG Pathwayko00190,ko01100,ko04145,ko04150,ko04721,ko04966,ko05110,ko05120,ko05323,map00190,map01100,map04145,map04150,map04721,map04966,map05110,map05120,map05323
KEGG ModuleM00160
Hectar predicted targeting categoryother localisation
GOsGO:0000003,GO:0000221,GO:0000323,GO:0003674,GO:0003824,GO:0005215,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005764,GO:0005765,GO:0005773,GO:0005774,GO:0006810,GO:0006811,GO:0006812,GO:0007275,GO:0007276,GO:0007292,GO:0008150,GO:0008324,GO:0008553,GO:0009790,GO:0015075,GO:0015077,GO:0015078,GO:0015318,GO:0015399,GO:0015405,GO:0015662,GO:0015672,GO:0016020,GO:0016462,GO:0016469,GO:0016471,GO:0016787,GO:0016817,GO:0016818,GO:0016887,GO:0017111,GO:0019829,GO:0019953,GO:0022414,GO:0022804,GO:0022853,GO:0022857,GO:0022890,GO:0030728,GO:0031090,GO:0032501,GO:0032502,GO:0032504,GO:0032991,GO:0033176,GO:0033178,GO:0033180,GO:0034220,GO:0036442,GO:0042623,GO:0042625,GO:0042626,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043492,GO:0044422,GO:0044424,GO:0044425,GO:0044437,GO:0044444,GO:0044446,GO:0044464,GO:0044703,GO:0044769,GO:0046961,GO:0048609,GO:0048856,GO:0051179,GO:0051234,GO:0051704,GO:0055085,GO:0090662,GO:0098588,GO:0098655,GO:0098660,GO:0098662,GO:0098796,GO:0098805,GO:0098852,GO:0099131,GO:0099132,GO:1902600
EggNOG free text desc.Subunit of the peripheral V1 complex of vacuolar ATPase. Subunit C is necessary for the assembly of the catalytic sector of the enzyme and is likely to have a specific function in its catalytic activity. V-ATPase is responsible for acidifying a variety of intracellular compartments in eukaryotic cells
EggNOG OGs1KUBX@119089,38C54@33154,3BBW4@33208,3CTY9@33213,40AZ3@6231,40V6I@6236,COG5127@1,KOG2909@2759
COG Functional cat.C
Best tax levelRhabditida
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002
Exons1
Model size429
Cds size429
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815698.4683053-CDS-M-pyrifera_M_contig117964:104..5331622815698.4683053-CDS-M-pyrifera_M_contig117964:104..533Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig117964 105..533 -
1692277527.3694549-CDS-M-pyrifera_M_contig117964:104..5331692277527.3694549-CDS-M-pyrifera_M_contig117964:104..533Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig117964 105..533 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig117964.3722.1prot_M-pyrifera_M_contig117964.3722.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig117964 105..533 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig117964.3722.1

>prot_M-pyrifera_M_contig117964.3722.1 ID=prot_M-pyrifera_M_contig117964.3722.1|Name=mRNA_M-pyrifera_M_contig117964.3722.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=143bp
MSKGKDVYWCVSVEAEKGREDAVFQRLSQLGGEAATCSRFAVPQLRVGTL
DMLMSLSDSLVKTDHTVENVTRKIGQYLTALRDTLNEGRSSHARADLTVS
VQHDDGRSLTLGDDQYLQKFTWIERRFPKKMTCDALAKRLSEV
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mRNA from alignment at M-pyrifera_M_contig117964:105..533-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig117964.3722.1 ID=mRNA_M-pyrifera_M_contig117964.3722.1|Name=mRNA_M-pyrifera_M_contig117964.3722.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=429bp|location=Sequence derived from alignment at M-pyrifera_M_contig117964:105..533- (Macrocystis pyrifera P11B4 male)
ATGTCCAAGGGAAAGGACGTCTATTGGTGCGTCTCCGTCGAGGCGGAGAA GGGCAGGGAGGACGCGGTGTTCCAGCGCCTCTCGCAGCTGGGCGGCGAGG CGGCCACGTGCTCGCGTTTCGCGGTGCCGCAGCTGCGCGTGGGCACGCTC GACATGCTCATGTCGCTGAGCGACAGCCTCGTCAAGACAGACCACACGGT GGAGAACGTGACGCGCAAGATCGGCCAGTACCTCACTGCCTTGCGCGACA CGCTGAACGAGGGCCGCAGCAGCCATGCCCGCGCCGACCTCACCGTCTCC GTCCAGCACGACGACGGTAGGTCCCTCACCCTGGGCGACGACCAGTACCT CCAGAAGTTCACTTGGATCGAGCGCCGCTTCCCCAAGAAGATGACCTGCG ACGCCCTCGCCAAGCGCCTCTCCGAGGTG
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig117964:105..533-

>mRNA_M-pyrifera_M_contig117964.3722.1 ID=mRNA_M-pyrifera_M_contig117964.3722.1|Name=mRNA_M-pyrifera_M_contig117964.3722.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=858bp|location=Sequence derived from alignment at M-pyrifera_M_contig117964:105..533- (Macrocystis pyrifera P11B4 male)
ATGTCCAAGGGAAAGGACGTCTATTGGTGCGTCTCCGTCGAGGCGGAGAA
GGGCAGGGAGGACGCGGTGTTCCAGCGCCTCTCGCAGCTGGGCGGCGAGG
CGGCCACGTGCTCGCGTTTCGCGGTGCCGCAGCTGCGCGTGGGCACGCTC
GACATGCTCATGTCGCTGAGCGACAGCCTCGTCAAGACAGACCACACGGT
GGAGAACGTGACGCGCAAGATCGGCCAGTACCTCACTGCCTTGCGCGACA
CGCTGAACGAGGGCCGCAGCAGCCATGCCCGCGCCGACCTCACCGTCTCC
GTCCAGCACGACGACGGTAGGTCCCTCACCCTGGGCGACGACCAGTACCT
CCAGAAGTTCACTTGGATCGAGCGCCGCTTCCCCAAGAAGATGACCTGCG
ACGCCCTCGCCAAGCGCCTCTCCGAGGTGATGTCCAAGGGAAAGGACGTC
TATTGGTGCGTCTCCGTCGAGGCGGAGAAGGGCAGGGAGGACGCGGTGTT
CCAGCGCCTCTCGCAGCTGGGCGGCGAGGCGGCCACGTGCTCGCGTTTCG
CGGTGCCGCAGCTGCGCGTGGGCACGCTCGACATGCTCATGTCGCTGAGC
GACAGCCTCGTCAAGACAGACCACACGGTGGAGAACGTGACGCGCAAGAT
CGGCCAGTACCTCACTGCCTTGCGCGACACGCTGAACGAGGGCCGCAGCA
GCCATGCCCGCGCCGACCTCACCGTCTCCGTCCAGCACGACGACGGTAGG
TCCCTCACCCTGGGCGACGACCAGTACCTCCAGAAGTTCACTTGGATCGA
GCGCCGCTTCCCCAAGAAGATGACCTGCGACGCCCTCGCCAAGCGCCTCT
CCGAGGTG
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