mRNA_M-pyrifera_M_contig117960.3721.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig117960.3721.1
Unique NamemRNA_M-pyrifera_M_contig117960.3721.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig117960.3721.1 vs. uniprot
Match: A0A261Y4J8_9FUNG (DUF3492 domain-containing protein n=1 Tax=Bifiguratus adelaidae TaxID=1938954 RepID=A0A261Y4J8_9FUNG)

HSP 1 Score: 72.4 bits (176), Expect = 1.230e-12
Identity = 39/102 (38.24%), Postives = 62/102 (60.78%), Query Frame = 1 
Query:    1 RVSPNAARMVLWGAWRKNGKKAPVLEAVHARFLDEYILRRAPSLRRYWRLRDRGQVPEAQGEVEEYGDAIQADLYIEESKLFRSNLQQRLSDMHLCGQGGDS 306
            +V+ + AR +LW  W+        +E VHAR LDE ILR  P L++YW  RDRG + +A+  ++   +AI A +YI++S    + L  ++SD++  G GGD+
Sbjct: 2237 KVNTHDARSLLWKTWQTEKN----VEGVHARILDEMILRNEPLLKQYWAARDRGAIQKARSVLKRNEEAIVAAMYIDDSVSGMTLLAFKISDLYAMGAGGDT 2334
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BLAST of mRNA_M-pyrifera_M_contig117960.3721.1 vs. uniprot
Match: A0A0N0NRR1_9EURO (Uncharacterized protein n=1 Tax=Phialophora attinorum TaxID=1664694 RepID=A0A0N0NRR1_9EURO)

HSP 1 Score: 62.0 bits (149), Expect = 5.510e-9
Identity = 35/102 (34.31%), Postives = 61/102 (59.80%), Query Frame = 1 
Query:    4 VSPNAARMVLWGAWRKNGKKAPVLEAVHARFLDEYILRRAPSLRRYWRLRDRGQVPEAQGEVEEYGDAIQADLYIEESKLFRSNLQQRLSDMHLCGQGGDSL 309
            +S + AR  LW AW KNG+    L+ V  R+LDE ++R+ P L++YWRLRD G + +A+  + E  D +++ + + +     + +  +L D+   G GGD++
Sbjct: 2000 ISTSMARSRLWKAW-KNGRD---LDGVVIRWLDEKLIRKDPVLKKYWRLRDAGNLRDAKRYLAENADVVRSSVDMADDIAGWTPIAYKLGDLISFGSGGDTI 2097
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BLAST of mRNA_M-pyrifera_M_contig117960.3721.1 vs. uniprot
Match: W2RQN5_9EURO (Uncharacterized protein n=1 Tax=Cyphellophora europaea CBS 101466 TaxID=1220924 RepID=W2RQN5_9EURO)

HSP 1 Score: 58.2 bits (139), Expect = 1.240e-7
Identity = 32/102 (31.37%), Postives = 60/102 (58.82%), Query Frame = 1 
Query:    4 VSPNAARMVLWGAWRKNGKKAPVLEAVHARFLDEYILRRAPSLRRYWRLRDRGQVPEAQGEVEEYGDAIQADLYIEESKLFRSNLQQRLSDMHLCGQGGDSL 309
            +S + AR  LW AW KN +    ++ V AR++DE ++R+   L++YWRLRD G +P A+  + +  D +++ + + +     + +  +L D+   G GGD++
Sbjct: 2024 ISTSMARSRLWKAW-KNSRD---IDGVIARWVDEKLVRKDKVLKKYWRLRDAGNLPAAKAYIMDMTDTVRSSVDMADDIAGWTPIAYKLGDLISFGSGGDTI 2121
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BLAST of mRNA_M-pyrifera_M_contig117960.3721.1 vs. uniprot
Match: A0A3M7NPN1_9EURO (Glycos_transf_1 domain-containing protein (Fragment) n=1 Tax=Chaetothyriales sp. CBS 134916 TaxID=2249418 RepID=A0A3M7NPN1_9EURO)

HSP 1 Score: 56.2 bits (134), Expect = 5.880e-7
Identity = 35/101 (34.65%), Postives = 55/101 (54.46%), Query Frame = 1 
Query:    4 VSPNAARMVLWGAWRKNGKKAPVLEAVHARFLDEYILRRAPSLRRYWRLRDRGQVPEAQGEVEEYGDAIQADLYIEESKLFRSNLQQRLSDMHLCGQGGDS 306
            +S + AR  LW  W    K +  ++AV AR+LDE+ LR    LR YWR RD G++  A   +  + D + A + ++      + L  + SD++  GQGGD+
Sbjct: 2058 ISTSLARAHLWKTW----KSSQDVDAVTARWLDEWALRSDSILRPYWRARDLGRLTAACNYLNAHADTVMARVDMDPEISSWTWLAFKTSDLYTFGQGGDT 2154
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BLAST of mRNA_M-pyrifera_M_contig117960.3721.1 vs. uniprot
Match: A0A3M7MMN5_9EURO (Glycos_transf_1 domain-containing protein (Fragment) n=1 Tax=Chaetothyriales sp. CBS 132003 TaxID=2249419 RepID=A0A3M7MMN5_9EURO)

HSP 1 Score: 53.9 bits (128), Expect = 3.790e-6
Identity = 34/101 (33.66%), Postives = 53/101 (52.48%), Query Frame = 1 
Query:    4 VSPNAARMVLWGAWRKNGKKAPVLEAVHARFLDEYILRRAPSLRRYWRLRDRGQVPEAQGEVEEYGDAIQADLYIEESKLFRSNLQQRLSDMHLCGQGGDS 306
            +S + AR  LW  W    K +  ++AV AR+LDE+ LR    LR YWR RD G++  A   +    D +   + ++      + L  + SD++  GQGGD+
Sbjct: 1421 ISTSRARAHLWKTW----KSSEDVDAVTARWLDEWALRSDSILRPYWRARDLGRLTAACNYLNSQADTVMTRVDMDPEISSWTWLAFKTSDLYTFGQGGDT 1517
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BLAST of mRNA_M-pyrifera_M_contig117960.3721.1 vs. uniprot
Match: A0A3M0WBU4_9EURO (Glycos_transf_1 domain-containing protein (Fragment) n=2 Tax=unclassified Chaetothyriales TaxID=316340 RepID=A0A3M0WBU4_9EURO)

HSP 1 Score: 50.8 bits (120), Expect = 4.600e-5
Identity = 33/101 (32.67%), Postives = 53/101 (52.48%), Query Frame = 1 
Query:    4 VSPNAARMVLWGAWRKNGKKAPVLEAVHARFLDEYILRRAPSLRRYWRLRDRGQVPEAQGEVEEYGDAIQADLYIEESKLFRSNLQQRLSDMHLCGQGGDS 306
            +S   AR  LW  W    K +  ++AV AR+LDE+ LR    L+ YWR RD G++  A   +    D + A + ++      + +  + SD++  GQGGD+
Sbjct: 2056 ISTARARAHLWKTW----KDSQDIDAVTARWLDEWALRSDSILKPYWRARDLGRLHAACNYLISQADTVMARVDMDPEISSWTWIAFKTSDLYTFGQGGDT 2152
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig117960.3721.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 6
Match NameE-valueIdentityDescription
A0A261Y4J8_9FUNG1.230e-1238.24DUF3492 domain-containing protein n=1 Tax=Bifigura... [more]
A0A0N0NRR1_9EURO5.510e-934.31Uncharacterized protein n=1 Tax=Phialophora attino... [more]
W2RQN5_9EURO1.240e-731.37Uncharacterized protein n=1 Tax=Cyphellophora euro... [more]
A0A3M7NPN1_9EURO5.880e-734.65Glycos_transf_1 domain-containing protein (Fragmen... [more]
A0A3M7MMN5_9EURO3.790e-633.66Glycos_transf_1 domain-containing protein (Fragmen... [more]
A0A3M0WBU4_9EURO4.600e-532.67Glycos_transf_1 domain-containing protein (Fragmen... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig117960contigM-pyrifera_M_contig117960:233..541 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeFungi
Seed ortholog score65.9
Seed ortholog evalue1.2e-08
Seed eggNOG ortholog101852.XP_008080367.1
Hectar predicted targeting categoryother localisation
EggNOG free text desc.Glycosyl transferases group 1
EggNOG OGs20YQQ@147548,2CKSY@1,2QUAK@2759,39UXC@33154,3NTXK@4751,3QP9K@4890
COG Functional cat.M
Best tax levelLeotiomycetes
Best eggNOG OGNA|NA|NA
Exons1
Model size309
Cds size285
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815698.4213202-UTR-M-pyrifera_M_contig117960:232..2561622815698.4213202-UTR-M-pyrifera_M_contig117960:232..256Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig117960 233..256 +
1692277527.3493993-UTR-M-pyrifera_M_contig117960:232..2561692277527.3493993-UTR-M-pyrifera_M_contig117960:232..256Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig117960 233..256 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815698.4333818-CDS-M-pyrifera_M_contig117960:256..5411622815698.4333818-CDS-M-pyrifera_M_contig117960:256..541Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig117960 257..541 +
1692277527.3591633-CDS-M-pyrifera_M_contig117960:256..5411692277527.3591633-CDS-M-pyrifera_M_contig117960:256..541Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig117960 257..541 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig117960.3721.1prot_M-pyrifera_M_contig117960.3721.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig117960 257..541 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig117960.3721.1

>prot_M-pyrifera_M_contig117960.3721.1 ID=prot_M-pyrifera_M_contig117960.3721.1|Name=mRNA_M-pyrifera_M_contig117960.3721.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=95bp
MVLWGAWRKNGKKAPVLEAVHARFLDEYILRRAPSLRRYWRLRDRGQVPE
AQGEVEEYGDAIQADLYIEESKLFRSNLQQRLSDMHLCGQGGDSL
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mRNA from alignment at M-pyrifera_M_contig117960:233..541+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig117960.3721.1 ID=mRNA_M-pyrifera_M_contig117960.3721.1|Name=mRNA_M-pyrifera_M_contig117960.3721.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=309bp|location=Sequence derived from alignment at M-pyrifera_M_contig117960:233..541+ (Macrocystis pyrifera P11B4 male)
AGGGTGAGCCCCAACGCAGCGCGCATGGTGCTGTGGGGCGCGTGGCGCAA
GAACGGGAAGAAGGCGCCCGTGCTGGAGGCGGTGCACGCCAGGTTCCTGG
ACGAGTACATTCTCCGGCGAGCGCCCAGTCTGCGGCGGTACTGGCGGCTG
CGGGACAGGGGGCAGGTGCCGGAGGCGCAGGGCGAGGTGGAAGAGTACGG
TGACGCGATCCAAGCGGACCTGTACATCGAGGAGAGCAAGCTGTTCAGGT
CGAACCTGCAGCAGCGGCTGTCGGATATGCACCTGTGCGGCCAGGGTGGC
GATTCTCTC
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig117960:233..541+

>mRNA_M-pyrifera_M_contig117960.3721.1 ID=mRNA_M-pyrifera_M_contig117960.3721.1|Name=mRNA_M-pyrifera_M_contig117960.3721.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=570bp|location=Sequence derived from alignment at M-pyrifera_M_contig117960:233..541+ (Macrocystis pyrifera P11B4 male)
ATGGTGCTGTGGGGCGCGTGGCGCAAGAACGGGAAGAAGGCGCCCGTGCT
GGAGGCGGTGCACGCCAGGTTCCTGGACGAGTACATTCTCCGGCGAGCGC
CCAGTCTGCGGCGGTACTGGCGGCTGCGGGACAGGGGGCAGGTGCCGGAG
GCGCAGGGCGAGGTGGAAGAGTACGGTGACGCGATCCAAGCGGACCTGTA
CATCGAGGAGAGCAAGCTGTTCAGGTCGAACCTGCAGCAGCGGCTGTCGG
ATATGCACCTGTGCGGCCAGGGTGGCGATTCTCTCATGGTGCTGTGGGGC
GCGTGGCGCAAGAACGGGAAGAAGGCGCCCGTGCTGGAGGCGGTGCACGC
CAGGTTCCTGGACGAGTACATTCTCCGGCGAGCGCCCAGTCTGCGGCGGT
ACTGGCGGCTGCGGGACAGGGGGCAGGTGCCGGAGGCGCAGGGCGAGGTG
GAAGAGTACGGTGACGCGATCCAAGCGGACCTGTACATCGAGGAGAGCAA
GCTGTTCAGGTCGAACCTGCAGCAGCGGCTGTCGGATATGCACCTGTGCG
GCCAGGGTGGCGATTCTCTC
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