mRNA_M-pyrifera_M_contig11795.3716.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig11795.3716.1
Unique NamemRNA_M-pyrifera_M_contig11795.3716.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig11795.3716.1 vs. uniprot
Match: D7FV66_ECTSI (Postmeiotic segregation increased 2 n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FV66_ECTSI)

HSP 1 Score: 212 bits (540), Expect = 6.420e-62
Identity = 103/118 (87.29%), Postives = 111/118 (94.07%), Query Frame = 1
Query:    1 VDEDAPTTKKLKITAVPFSKRTQFGVDDVHELASIVAESDSPGEMARLPKARAMFASRACRSSIMIGKALDRGQMERVVAKMATIEQPWNCPHGRPTMRHLADVSKSLRTAAGLDPLL 354
            +D+D PTTKKLKITA+PFSK TQFGVDDVHELASIVA++ +PGEM RLPKARAMFASRACRSS MIGKALD+GQM RVVAKMATIEQPWNCPHGRPTMRHLADVS SLRTAAGL+PLL
Sbjct:  788 IDDDQPTTKKLKITAIPFSKGTQFGVDDVHELASIVADNTNPGEMVRLPKARAMFASRACRSSFMIGKALDKGQMARVVAKMATIEQPWNCPHGRPTMRHLADVSASLRTAAGLEPLL 905          
BLAST of mRNA_M-pyrifera_M_contig11795.3716.1 vs. uniprot
Match: A0A7S2RTW0_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2RTW0_9STRA)

HSP 1 Score: 140 bits (352), Expect = 1.100e-39
Identity = 70/109 (64.22%), Postives = 86/109 (78.90%), Query Frame = 1
Query:    1 VDEDAPTTKKLKITAVPFSKRTQFGVDDVHELASIVAE--SDSPGEMA--RLPKARAMFASRACRSSIMIGKALDRGQMERVVAKMATIEQPWNCPHGRPTMRHLADVS 315
            VDE AP T++LK+  VPFSK TQFGVDD+HELASI+A+  SDS    +  +LPK R MFASRACRSS+MIG ALD   M ++V K+ +IEQPWNCPHGRPTMRHL +++
Sbjct:   74 VDEAAPPTQRLKLEKVPFSKTTQFGVDDIHELASIIADLPSDSAAGYSDLQLPKIRMMFASRACRSSVMIGTALDVPAMAKIVRKLESIEQPWNCPHGRPTMRHLTELT 182          
BLAST of mRNA_M-pyrifera_M_contig11795.3716.1 vs. uniprot
Match: A0A6A5AM97_9STRA (MutL_C domain-containing protein (Fragment) n=1 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A6A5AM97_9STRA)

HSP 1 Score: 138 bits (347), Expect = 7.240e-39
Identity = 67/109 (61.47%), Postives = 83/109 (76.15%), Query Frame = 1
Query:    1 VDEDAPTTKKLKITAVPFSKRTQFGVDDVHELASIVAESDSPGEMA--RLPKARAMFASRACRSSIMIGKALDRGQMERVVAKMATIEQPWNCPHGRPTMRHLADVSKS 321
            VD  AP T+KL++ +VPFSK TQ+GVDDV EL S+V ES      A  RLPK  AMFASRACRS++MIG AL R  M+++V ++A +EQPWNCPHGRPTMRHL D+S +
Sbjct:   85 VDPAAPVTQKLRLISVPFSKHTQWGVDDVRELVSLVLESPHAAAAATIRLPKTLAMFASRACRSAVMIGTALKREDMQKIVVQLAELEQPWNCPHGRPTMRHLVDLSST 193          
BLAST of mRNA_M-pyrifera_M_contig11795.3716.1 vs. uniprot
Match: I2CR37_NANGC (MutL_C domain-containing protein (Fragment) n=1 Tax=Nannochloropsis gaditana (strain CCMP526) TaxID=1093141 RepID=I2CR37_NANGC)

HSP 1 Score: 135 bits (341), Expect = 1.230e-37
Identity = 65/115 (56.52%), Postives = 84/115 (73.04%), Query Frame = 1
Query:    1 VDEDAPTTKKLKITAVPFSKRTQFGVDDVHELASIVAES----------DSPGEMARLPKARAMFASRACRSSIMIGKALDRGQMERVVAKMATIEQPWNCPHGRPTMRHLADVS 315
            +D +A   +++K+ ++P+SK  QFG+ D+HELAS++ +S          + P    RLPK RAMFASRACR SIMIGKAL R QM++VVA +A IEQPWNCPHGRPTMRHL D+S
Sbjct:  107 LDPEAGPMERIKLLSLPYSKGIQFGLQDIHELASLLGDSSFCGGVEEGAEGPAPSVRLPKIRAMFASRACRMSIMIGKALTRSQMQKVVANLAEIEQPWNCPHGRPTMRHLVDLS 221          
BLAST of mRNA_M-pyrifera_M_contig11795.3716.1 vs. uniprot
Match: A0A485LCN4_9STRA (Aste57867_19480 protein n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A485LCN4_9STRA)

HSP 1 Score: 144 bits (362), Expect = 1.590e-37
Identity = 65/106 (61.32%), Postives = 85/106 (80.19%), Query Frame = 1
Query:    1 VDEDAPTTKKLKITAVPFSKRTQFGVDDVHELASIVAESDSPGEMARLPKARAMFASRACRSSIMIGKALDRGQMERVVAKMATIEQPWNCPHGRPTMRHLADVSK 318
            VDE AP T+KLK+ ++PFSK TQ+GVDDV EL S++ E+  P    RLPK  AMFASRACRS++MIG AL + +M+++V ++A +EQPWNCPHGRPTMRHL D+S+
Sbjct:  658 VDEGAPVTQKLKLISLPFSKHTQWGVDDVRELVSLLLENPHPPSTIRLPKTLAMFASRACRSAVMIGTALKKEEMQKIVGQLADLEQPWNCPHGRPTMRHLVDLSE 763          
BLAST of mRNA_M-pyrifera_M_contig11795.3716.1 vs. uniprot
Match: A0A165N711_EXIGL (Pms2 protein (Fragment) n=1 Tax=Exidia glandulosa HHB12029 TaxID=1314781 RepID=A0A165N711_EXIGL)

HSP 1 Score: 135 bits (340), Expect = 1.790e-37
Identity = 63/110 (57.27%), Postives = 83/110 (75.45%), Query Frame = 1
Query:    1 VDEDAPTTKKLKITAVPFSKRTQFGVDDVHELASIVAESDSPGEMARLPKARAMFASRACRSSIMIGKALDRGQMERVVAKMATIEQPWNCPHGRPTMRHLADVSKSLRT 330
            VDEDAP  +++K+TA+P SK T F V+D+ EL  ++ +S +PG+MAR  K RAMFA RACR S+MIG AL+  QM+ +V+ M T++QPWNCPHGRPTMRHLA +    RT
Sbjct:  102 VDEDAPAHQRIKLTAIPVSKNTSFSVEDLEELIHLLRDS-APGQMARCSKVRAMFAMRACRKSVMIGDALNMRQMKEIVSHMGTMDQPWNCPHGRPTMRHLASLQHVQRT 210          
BLAST of mRNA_M-pyrifera_M_contig11795.3716.1 vs. uniprot
Match: A0A024UUQ3_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces invadans TaxID=157072 RepID=A0A024UUQ3_9STRA)

HSP 1 Score: 143 bits (360), Expect = 3.300e-37
Identity = 67/113 (59.29%), Postives = 86/113 (76.11%), Query Frame = 1
Query:    1 VDEDAPTTKKLKITAVPFSKRTQFGVDDVHELASIVAESDSPGEMARLPKARAMFASRACRSSIMIGKALDRGQMERVVAKMATIEQPWNCPHGRPTMRHLADVSKSLRTAAG 339
            VD  A  T+KLK+ +VPFSK TQ+GVDDV EL S+V ES       RLPK  AMFASRACRS++MIG AL R +M++++ ++A +EQPWNCPHGRPTMRHL D+S +L++  G
Sbjct:  714 VDPSAAATQKLKLISVPFSKHTQWGVDDVRELVSLVLESPHAASTIRLPKTLAMFASRACRSAVMIGTALKRDEMQKILLQLAELEQPWNCPHGRPTMRHLVDLSCTLQSQKG 826          
BLAST of mRNA_M-pyrifera_M_contig11795.3716.1 vs. uniprot
Match: A0A6G0XYA5_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0XYA5_9STRA)

HSP 1 Score: 142 bits (357), Expect = 7.910e-37
Identity = 66/106 (62.26%), Postives = 85/106 (80.19%), Query Frame = 1
Query:    1 VDEDAPTTKKLKITAVPFSKRTQFGVDDVHELASIVAESDSPGEMARLPKARAMFASRACRSSIMIGKALDRGQMERVVAKMATIEQPWNCPHGRPTMRHLADVSK 318
            VDE A  T+KLK+ +VPFSK+TQ+GVDDV EL S++ ES +     RLPK  AMFASRACRS++MIG AL R +M+++V ++A +EQPWNCPHGRPTMRHL D+S+
Sbjct:  672 VDESANVTEKLKLISVPFSKQTQWGVDDVRELVSLLLESPNTPATIRLPKTLAMFASRACRSAVMIGTALKRDEMQKIVLQLAELEQPWNCPHGRPTMRHLVDLSE 777          
BLAST of mRNA_M-pyrifera_M_contig11795.3716.1 vs. uniprot
Match: A0A7S3ESW8_9EUKA (Hypothetical protein n=1 Tax=Haptolina ericina TaxID=156174 RepID=A0A7S3ESW8_9EUKA)

HSP 1 Score: 129 bits (324), Expect = 7.160e-36
Identity = 61/115 (53.04%), Postives = 84/115 (73.04%), Query Frame = 1
Query:    1 VDEDAPTTKKLKITAVPFSKRTQFGVDDVHELASIVAESDSPGEMARLPKARAMFASRACRSSIMIGKALDRGQMERVVAKMATIEQPWNCPHGRPTMRHLADVSKSLRTAAGLD 345
            VD  A  T++L++ A+PFSK T FG  D+ EL  +++E+  PG+  RLPK RAMFA RACRSS+MIG AL+  +M ++V+++A +EQPWNCPHGRPT+RHL D++    T A  D
Sbjct:   36 VDTAAAPTQRLRLVALPFSKHTVFGASDITELVHLLSEA--PGQQCRLPKLRAMFAMRACRSSVMIGTALEHAKMRQLVSQLAGLEQPWNCPHGRPTLRHLVDLAALEGTPATRD 148          
BLAST of mRNA_M-pyrifera_M_contig11795.3716.1 vs. uniprot
Match: A0A7S4BIB1_CHRCT (Hypothetical protein n=1 Tax=Chrysotila carterae TaxID=13221 RepID=A0A7S4BIB1_CHRCT)

HSP 1 Score: 137 bits (344), Expect = 1.160e-35
Identity = 65/109 (59.63%), Postives = 85/109 (77.98%), Query Frame = 1
Query:   10 DAPTTKKLKITAVPFSKRTQFGVDDVHELASIVAESDSPGEMARLPKARAMFASRACRSSIMIGKALDRGQMERVVAKMATIEQPWNCPHGRPTMRHLADVSKSLRTAA 336
            DA  T++L++ A+PFSKRT FGV DVHEL ++++E+  PG   RLPK R MFASRACRS++MIG ALD G+M +VV+K++ + QPWNCPHGRPT+RHL D+     TAA
Sbjct:  400 DAAPTQRLRLRALPFSKRTLFGVADVHELVALLSEA--PGTQHRLPKLRDMFASRACRSAVMIGTALDSGKMRQVVSKLSELHQPWNCPHGRPTLRHLVDLRALEATAA 506          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig11795.3716.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FV66_ECTSI6.420e-6287.29Postmeiotic segregation increased 2 n=2 Tax=Ectoca... [more]
A0A7S2RTW0_9STRA1.100e-3964.22Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]
A0A6A5AM97_9STRA7.240e-3961.47MutL_C domain-containing protein (Fragment) n=1 Ta... [more]
I2CR37_NANGC1.230e-3756.52MutL_C domain-containing protein (Fragment) n=1 Ta... [more]
A0A485LCN4_9STRA1.590e-3761.32Aste57867_19480 protein n=1 Tax=Aphanomyces stella... [more]
A0A165N711_EXIGL1.790e-3757.27Pms2 protein (Fragment) n=1 Tax=Exidia glandulosa ... [more]
A0A024UUQ3_9STRA3.300e-3759.29Uncharacterized protein n=1 Tax=Aphanomyces invada... [more]
A0A6G0XYA5_9STRA7.910e-3762.26Uncharacterized protein n=1 Tax=Aphanomyces euteic... [more]
A0A7S3ESW8_9EUKA7.160e-3653.04Hypothetical protein n=1 Tax=Haptolina ericina Tax... [more]
A0A7S4BIB1_CHRCT1.160e-3559.63Hypothetical protein n=1 Tax=Chrysotila carterae T... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig11795contigM-pyrifera_M_contig11795:508..870 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score212.2
Seed ortholog evalue1.3e-52
Seed eggNOG ortholog2880.D7FV66
Preferred namePms1
KEGG koko:K10858
KEGG Pathwayko03430,ko03460,map03430,map03460
KEGG ModuleM00295
Hectar predicted targeting categoryother localisation
GOsGO:0000003,GO:0002200,GO:0002376,GO:0002377,GO:0002440,GO:0002520,GO:0002566,GO:0003006,GO:0003674,GO:0003676,GO:0003677,GO:0003690,GO:0003697,GO:0003824,GO:0004518,GO:0004519,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005737,GO:0005829,GO:0005856,GO:0005886,GO:0006139,GO:0006259,GO:0006281,GO:0006298,GO:0006310,GO:0006725,GO:0006807,GO:0006950,GO:0006974,GO:0007275,GO:0008150,GO:0008152,GO:0009555,GO:0009791,GO:0009987,GO:0010154,GO:0015630,GO:0016020,GO:0016445,GO:0016446,GO:0016462,GO:0016787,GO:0016788,GO:0016817,GO:0016818,GO:0016887,GO:0017111,GO:0022414,GO:0030983,GO:0031974,GO:0031981,GO:0032135,GO:0032138,GO:0032300,GO:0032389,GO:0032501,GO:0032502,GO:0032991,GO:0033554,GO:0034641,GO:0035770,GO:0036464,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0044237,GO:0044238,GO:0044260,GO:0044422,GO:0044424,GO:0044428,GO:0044444,GO:0044446,GO:0044464,GO:0046483,GO:0048229,GO:0048316,GO:0048608,GO:0048731,GO:0048856,GO:0050896,GO:0051716,GO:0061458,GO:0070013,GO:0071704,GO:0071944,GO:0090304,GO:0090305,GO:0097159,GO:1901360,GO:1901363,GO:1990391,GO:1990904
EggNOG free text desc.mismatched DNA binding
EggNOG OGsCOG0323@1,KOG1978@2759
COG Functional cat.L
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko03400
Exons1
Model size363
Cds size363
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815698.073144-CDS-M-pyrifera_M_contig11795:507..8701622815698.073144-CDS-M-pyrifera_M_contig11795:507..870Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig11795 508..870 +
1692277527.1740744-CDS-M-pyrifera_M_contig11795:507..8701692277527.1740744-CDS-M-pyrifera_M_contig11795:507..870Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig11795 508..870 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig11795.3716.1prot_M-pyrifera_M_contig11795.3716.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig11795 508..870 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig11795.3716.1

>prot_M-pyrifera_M_contig11795.3716.1 ID=prot_M-pyrifera_M_contig11795.3716.1|Name=mRNA_M-pyrifera_M_contig11795.3716.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=121bp
VDEDAPTTKKLKITAVPFSKRTQFGVDDVHELASIVAESDSPGEMARLPK
ARAMFASRACRSSIMIGKALDRGQMERVVAKMATIEQPWNCPHGRPTMRH
LADVSKSLRTAAGLDPLLEG*
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mRNA from alignment at M-pyrifera_M_contig11795:508..870+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig11795.3716.1 ID=mRNA_M-pyrifera_M_contig11795.3716.1|Name=mRNA_M-pyrifera_M_contig11795.3716.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=363bp|location=Sequence derived from alignment at M-pyrifera_M_contig11795:508..870+ (Macrocystis pyrifera P11B4 male)
GTCGACGAGGATGCGCCCACGACGAAGAAGCTCAAGATAACGGCGGTCCC CTTCAGCAAACGCACGCAGTTCGGCGTAGATGACGTCCACGAGCTGGCGT CCATCGTGGCCGAGAGTGATAGCCCAGGCGAGATGGCCAGGTTGCCGAAA GCGCGTGCCATGTTCGCGAGTCGAGCGTGCCGCAGCTCGATCATGATCGG AAAGGCGCTTGACAGGGGGCAGATGGAGCGCGTGGTGGCCAAGATGGCGA CCATCGAGCAGCCTTGGAATTGTCCACACGGCCGACCGACCATGAGGCAT CTCGCAGACGTATCCAAGAGCTTGAGGACGGCGGCGGGGTTGGATCCGTT GCTCGAAGGCTAG
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig11795:508..870+

>mRNA_M-pyrifera_M_contig11795.3716.1 ID=mRNA_M-pyrifera_M_contig11795.3716.1|Name=mRNA_M-pyrifera_M_contig11795.3716.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=726bp|location=Sequence derived from alignment at M-pyrifera_M_contig11795:508..870+ (Macrocystis pyrifera P11B4 male)
GTCGACGAGGATGCGCCCACGACGAAGAAGCTCAAGATAACGGCGGTCCC
CTTCAGCAAACGCACGCAGTTCGGCGTAGATGACGTCCACGAGCTGGCGT
CCATCGTGGCCGAGAGTGATAGCCCAGGCGAGATGGCCAGGTTGCCGAAA
GCGCGTGCCATGTTCGCGAGTCGAGCGTGCCGCAGCTCGATCATGATCGG
AAAGGCGCTTGACAGGGGGCAGATGGAGCGCGTGGTGGCCAAGATGGCGA
CCATCGAGCAGCCTTGGAATTGTCCACACGGCCGACCGACCATGAGGCAT
CTCGCAGACGTATCCAAGAGCTTGAGGACGGCGGCGGGGTTGGATCCGTT
GCTCGAAGGCTAGGTCGACGAGGATGCGCCCACGACGAAGAAGCTCAAGA
TAACGGCGGTCCCCTTCAGCAAACGCACGCAGTTCGGCGTAGATGACGTC
CACGAGCTGGCGTCCATCGTGGCCGAGAGTGATAGCCCAGGCGAGATGGC
CAGGTTGCCGAAAGCGCGTGCCATGTTCGCGAGTCGAGCGTGCCGCAGCT
CGATCATGATCGGAAAGGCGCTTGACAGGGGGCAGATGGAGCGCGTGGTG
GCCAAGATGGCGACCATCGAGCAGCCTTGGAATTGTCCACACGGCCGACC
GACCATGAGGCATCTCGCAGACGTATCCAAGAGCTTGAGGACGGCGGCGG
GGTTGGATCCGTTGCTCGAAGGCTAG
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