mRNA_M-pyrifera_M_contig117949.3715.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig117949.3715.1
Unique NamemRNA_M-pyrifera_M_contig117949.3715.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
[Close]
BLAST of mRNA_M-pyrifera_M_contig117949.3715.1 vs. uniprot
Match: A0A2H1CBF8_FASHE (MOR2-PAG1_N domain-containing protein n=1 Tax=Fasciola hepatica TaxID=6192 RepID=A0A2H1CBF8_FASHE)

HSP 1 Score: 58.9 bits (141), Expect = 8.010e-8
Identity = 29/100 (29.00%), Postives = 55/100 (55.00%), Query Frame = 1 
Query:   13 RKALYQVLAMVDTQIGSA--LAYNHPGRHTAQEVLSKDKLPLLELLRTCITCVRRVPPADIGIVPLLGLIVPYCFHLDINVKVEAKHFCTGLLCTVPSLR 306
            R+A   +L  +DTQ+     L      +   +E+++ ++ P L+LL+TC+ C+ R+ P D+G   LL L+   C H+D +++  A+     L+  +P+ R
Sbjct:   80 RRAFESILRQLDTQVCRVMILPKQEVSQKEVEELMTTERKPKLDLLKTCVACIPRLLPNDMGQPELLELLAKVCLHVDEDLRKMAQQAMANLIVELPAFR 179
[Close]
BLAST of mRNA_M-pyrifera_M_contig117949.3715.1 vs. uniprot
Match: A0A504YMH5_FASGI (Protein furry n=1 Tax=Fasciola gigantica TaxID=46835 RepID=A0A504YMH5_FASGI)

HSP 1 Score: 58.9 bits (141), Expect = 9.190e-8
Identity = 29/100 (29.00%), Postives = 55/100 (55.00%), Query Frame = 1 
Query:   13 RKALYQVLAMVDTQIGSA--LAYNHPGRHTAQEVLSKDKLPLLELLRTCITCVRRVPPADIGIVPLLGLIVPYCFHLDINVKVEAKHFCTGLLCTVPSLR 306
            R+A   +L  +DTQ+     L      +   +E+++ ++ P L+LL+TC+ C+ R+ P D+G   LL L+   C H+D +++  A+     L+  +P+ R
Sbjct:  570 RRAFESILRQLDTQVCRVMILPKQEVSQKEVEELMTTERKPKLDLLKTCVACIPRLLPNDMGQPELLELLAKVCLHVDEDLRKMAQQAMANLIVELPAFR 669
[Close]
BLAST of mRNA_M-pyrifera_M_contig117949.3715.1 vs. uniprot
Match: A0A4E0RSF5_FASHE (Protein furry n=3 Tax=Fasciola hepatica TaxID=6192 RepID=A0A4E0RSF5_FASHE)

HSP 1 Score: 58.9 bits (141), Expect = 9.570e-8
Identity = 29/100 (29.00%), Postives = 55/100 (55.00%), Query Frame = 1 
Query:   13 RKALYQVLAMVDTQIGSA--LAYNHPGRHTAQEVLSKDKLPLLELLRTCITCVRRVPPADIGIVPLLGLIVPYCFHLDINVKVEAKHFCTGLLCTVPSLR 306
            R+A   +L  +DTQ+     L      +   +E+++ ++ P L+LL+TC+ C+ R+ P D+G   LL L+   C H+D +++  A+     L+  +P+ R
Sbjct:  570 RRAFESILRQLDTQVCRVMILPKQEVSQKEVEELMTTERKPKLDLLKTCVACIPRLLPNDMGQPELLELLAKVCLHVDEDLRKMAQQAMANLIVELPAFR 669
[Close]
BLAST of mRNA_M-pyrifera_M_contig117949.3715.1 vs. uniprot
Match: A0A419QID0_CLOSI (Protein furry-like protein-like (Fragment) n=7 Tax=Opisthorchiidae TaxID=6196 RepID=A0A419QID0_CLOSI)

HSP 1 Score: 57.8 bits (138), Expect = 2.430e-7
Identity = 31/104 (29.81%), Postives = 57/104 (54.81%), Query Frame = 1 
Query:    1 LLRFRKALYQVLAMVDTQIGSALAYNH--PGRHTAQEVLSKDKLPLLELLRTCITCVRRVPPADIGIVPLLGLIVPYCFHLDINVKVEAKHFCTGLLCTVPSLR 306
            LL  R+A   +L  +DTQ+   +  +     +   +E++S ++ P ++LL+TC+ C+ R+ P D+    LL L+   C HLD +V+  A+     L+  +P+ R
Sbjct:  553 LLPIRRAFELILRQLDTQVCRTMMLSKLDVSQKEFEELMSAERKPKMDLLKTCVACIPRLLPNDMTKPELLELLAKVCLHLDEDVRNMAQQAMANLIVELPAFR 656
[Close]
BLAST of mRNA_M-pyrifera_M_contig117949.3715.1 vs. uniprot
Match: A0A183PW91_9TREM (MOR2-PAG1_N domain-containing protein n=1 Tax=Schistosoma mattheei TaxID=31246 RepID=A0A183PW91_9TREM)

HSP 1 Score: 56.2 bits (134), Expect = 3.140e-7
Identity = 30/107 (28.04%), Postives = 57/107 (53.27%), Query Frame = 1 
Query:   13 RKALYQVLAMVDTQIGSALAYNHPGRHTAQ----EVLSKDKLPLLELLRTCITCVRRVPPADIGIVPLLGLIVPYCFHLDINVKVEAKHFCTGLLCTVPSLRAVLLE 321
            R+A   +L  +DTQ+   +    P +   Q    E+++ D+ P L+LL+TC+ C+ R+ P D+    +L ++   C H+D +V+  A+     L+  +P+ R   +E
Sbjct:   94 RRAFEHILRQLDTQVCRTMML--PKQEVTQKEFDELMTADRKPKLDLLKTCVACIPRLLPIDMTKQEILEILAKVCLHVDEDVRKMAQQAMANLIVELPAYRVKTIE 198
[Close]
BLAST of mRNA_M-pyrifera_M_contig117949.3715.1 vs. uniprot
Match: A0A183RZV6_9TREM (MOR2-PAG1_N domain-containing protein n=1 Tax=Schistosoma rodhaini TaxID=6188 RepID=A0A183RZV6_9TREM)

HSP 1 Score: 55.1 bits (131), Expect = 4.420e-7
Identity = 29/102 (28.43%), Postives = 55/102 (53.92%), Query Frame = 1 
Query:   13 RKALYQVLAMVDTQIGSALAYNHPGRHTAQ----EVLSKDKLPLLELLRTCITCVRRVPPADIGIVPLLGLIVPYCFHLDINVKVEAKHFCTGLLCTVPSLR 306
            R+A   +L  +DTQ+   +    P +   Q    E+++ D+ P L+LL+TC+ C+ R+ P D+    +L ++   C H+D +V+  A+     L+  +P+ R
Sbjct:   47 RRAFEHILRQLDTQVCRPMML--PKQEVTQKEFDELMTADRKPKLDLLKTCVACIPRLLPIDMTKQEILEILAKVCLHVDEDVRKMAQQAMANLIVELPAYR 146
[Close]
BLAST of mRNA_M-pyrifera_M_contig117949.3715.1 vs. uniprot
Match: A0A8E0S0E8_9TREM (Protein furry n=1 Tax=Fasciolopsis buski TaxID=27845 RepID=A0A8E0S0E8_9TREM)

HSP 1 Score: 56.6 bits (135), Expect = 5.950e-7
Identity = 28/100 (28.00%), Postives = 54/100 (54.00%), Query Frame = 1 
Query:   13 RKALYQVLAMVDTQIGSA--LAYNHPGRHTAQEVLSKDKLPLLELLRTCITCVRRVPPADIGIVPLLGLIVPYCFHLDINVKVEAKHFCTGLLCTVPSLR 306
            R+A   +L  +DTQ+     L      +   +E+++ ++ P L+LL+TC+ C+ R+ P D+    LL L+   C H+D +++  A+     L+  +P+ R
Sbjct:   92 RRAFESILRQLDTQVCRVMILPKQEVSQKEVEELMTAERKPKLDLLKTCVACIPRLLPNDMSQPELLELLAKVCLHVDEDLRKMAQQAMANLIVELPAFR 191
[Close]
BLAST of mRNA_M-pyrifera_M_contig117949.3715.1 vs. uniprot
Match: A0A430QF60_SCHBO (Uncharacterized protein n=1 Tax=Schistosoma bovis TaxID=6184 RepID=A0A430QF60_SCHBO)

HSP 1 Score: 55.5 bits (132), Expect = 1.370e-6
Identity = 29/102 (28.43%), Postives = 55/102 (53.92%), Query Frame = 1 
Query:   13 RKALYQVLAMVDTQIGSALAYNHPGRHTAQ----EVLSKDKLPLLELLRTCITCVRRVPPADIGIVPLLGLIVPYCFHLDINVKVEAKHFCTGLLCTVPSLR 306
            R+A   +L  +DTQ+   +    P +   Q    E+++ D+ P L+LL+TC+ C+ R+ P D+    +L ++   C H+D +V+  A+     L+  +P+ R
Sbjct:  308 RRAFEHILRQLDTQVCRTMML--PKQEVTQKEFDELMTADRKPKLDLLKTCVACIPRLLPIDMTKQEILEILAKVCLHVDEDVRKMAQQAMANLIVELPAYR 407
[Close]
BLAST of mRNA_M-pyrifera_M_contig117949.3715.1 vs. uniprot
Match: A0A183MHW3_9TREM (Uncharacterized protein n=2 Tax=Schistosoma margrebowiei TaxID=48269 RepID=A0A183MHW3_9TREM)

HSP 1 Score: 55.5 bits (132), Expect = 1.420e-6
Identity = 29/102 (28.43%), Postives = 55/102 (53.92%), Query Frame = 1 
Query:   13 RKALYQVLAMVDTQIGSALAYNHPGRHTAQ----EVLSKDKLPLLELLRTCITCVRRVPPADIGIVPLLGLIVPYCFHLDINVKVEAKHFCTGLLCTVPSLR 306
            R+A   +L  +DTQ+   +    P +   Q    E+++ D+ P L+LL+TC+ C+ R+ P D+    +L ++   C H+D +V+  A+     L+  +P+ R
Sbjct:  294 RRAFEHILRQLDTQVCRTMML--PKQEVTQKEFDELMTADRKPKLDLLKTCVACIPRLLPIDMTKQEILEILAKVCLHVDEDVRKMAQQAMANLIVELPAYR 393
[Close]
BLAST of mRNA_M-pyrifera_M_contig117949.3715.1 vs. uniprot
Match: A0A4Z2DN18_SCHJA (Protein furry (Fragment) n=1 Tax=Schistosoma japonicum TaxID=6182 RepID=A0A4Z2DN18_SCHJA)

HSP 1 Score: 55.5 bits (132), Expect = 1.550e-6
Identity = 29/102 (28.43%), Postives = 55/102 (53.92%), Query Frame = 1 
Query:   13 RKALYQVLAMVDTQIGSALAYNHPGRHTAQ----EVLSKDKLPLLELLRTCITCVRRVPPADIGIVPLLGLIVPYCFHLDINVKVEAKHFCTGLLCTVPSLR 306
            R+A   +L  +DTQ+   +    P +   Q    E+++ D+ P L+LL+TC+ C+ R+ P D+    +L ++   C H+D +V+  A+     L+  +P+ R
Sbjct:  557 RRAFEHILRQLDTQVCRTMML--PKQEVTQKEFDELMTADRKPKLDLLKTCVACIPRLLPIDMTKQEILEILAKVCLHVDEDVRKMAQQAMANLIVELPAYR 656
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig117949.3715.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A2H1CBF8_FASHE8.010e-829.00MOR2-PAG1_N domain-containing protein n=1 Tax=Fasc... [more]
A0A504YMH5_FASGI9.190e-829.00Protein furry n=1 Tax=Fasciola gigantica TaxID=468... [more]
A0A4E0RSF5_FASHE9.570e-829.00Protein furry n=3 Tax=Fasciola hepatica TaxID=6192... [more]
A0A419QID0_CLOSI2.430e-729.81Protein furry-like protein-like (Fragment) n=7 Tax... [more]
A0A183PW91_9TREM3.140e-728.04MOR2-PAG1_N domain-containing protein n=1 Tax=Schi... [more]
A0A183RZV6_9TREM4.420e-728.43MOR2-PAG1_N domain-containing protein n=1 Tax=Schi... [more]
A0A8E0S0E8_9TREM5.950e-728.00Protein furry n=1 Tax=Fasciolopsis buski TaxID=278... [more]
A0A430QF60_SCHBO1.370e-628.43Uncharacterized protein n=1 Tax=Schistosoma bovis ... [more]
A0A183MHW3_9TREM1.420e-628.43Uncharacterized protein n=2 Tax=Schistosoma margre... [more]
A0A4Z2DN18_SCHJA1.550e-628.43Protein furry (Fragment) n=1 Tax=Schistosoma japon... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig117949contigM-pyrifera_M_contig117949:6..344 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal peptide
Exons1
Model size339
Cds size339
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815698.0232656-CDS-M-pyrifera_M_contig117949:5..3441622815698.0232656-CDS-M-pyrifera_M_contig117949:5..344Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig117949 6..344 -
1692277527.1612802-CDS-M-pyrifera_M_contig117949:5..3441692277527.1612802-CDS-M-pyrifera_M_contig117949:5..344Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig117949 6..344 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig117949.3715.1prot_M-pyrifera_M_contig117949.3715.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig117949 6..344 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig117949.3715.1

>prot_M-pyrifera_M_contig117949.3715.1 ID=prot_M-pyrifera_M_contig117949.3715.1|Name=mRNA_M-pyrifera_M_contig117949.3715.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=113bp
LLRFRKALYQVLAMVDTQIGSALAYNHPGRHTAQEVLSKDKLPLLELLRT
CITCVRRVPPADIGIVPLLGLIVPYCFHLDINVKVEAKHFCTGLLCTVPS
LRAVLLEALCKVV
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mRNA from alignment at M-pyrifera_M_contig117949:6..344-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig117949.3715.1 ID=mRNA_M-pyrifera_M_contig117949.3715.1|Name=mRNA_M-pyrifera_M_contig117949.3715.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=339bp|location=Sequence derived from alignment at M-pyrifera_M_contig117949:6..344- (Macrocystis pyrifera P11B4 male)
TTGCTGCGCTTTCGCAAGGCCCTCTACCAGGTGCTCGCCATGGTAGACAC
CCAGATCGGCTCTGCCCTCGCTTACAACCACCCTGGGAGACACACTGCCC
AGGAAGTGCTCTCCAAGGACAAGCTTCCGCTCCTCGAGCTCCTGCGCACG
TGCATCACTTGCGTGAGGCGCGTGCCGCCGGCCGACATCGGCATTGTACC
GCTGCTGGGCCTCATCGTGCCCTATTGCTTTCACCTGGACATCAACGTCA
AGGTCGAGGCCAAACACTTCTGCACGGGCTTGCTCTGCACCGTTCCGTCT
CTCCGAGCTGTCCTGCTGGAAGCCCTCTGCAAGGTCGTC
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig117949:6..344-

>mRNA_M-pyrifera_M_contig117949.3715.1 ID=mRNA_M-pyrifera_M_contig117949.3715.1|Name=mRNA_M-pyrifera_M_contig117949.3715.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=678bp|location=Sequence derived from alignment at M-pyrifera_M_contig117949:6..344- (Macrocystis pyrifera P11B4 male)
TTGCTGCGCTTTCGCAAGGCCCTCTACCAGGTGCTCGCCATGGTAGACAC
CCAGATCGGCTCTGCCCTCGCTTACAACCACCCTGGGAGACACACTGCCC
AGGAAGTGCTCTCCAAGGACAAGCTTCCGCTCCTCGAGCTCCTGCGCACG
TGCATCACTTGCGTGAGGCGCGTGCCGCCGGCCGACATCGGCATTGTACC
GCTGCTGGGCCTCATCGTGCCCTATTGCTTTCACCTGGACATCAACGTCA
AGGTCGAGGCCAAACACTTCTGCACGGGCTTGCTCTGCACCGTTCCGTCT
CTCCGAGCTGTCCTGCTGGAAGCCCTCTGCAAGGTCGTCTTGCTGCGCTT
TCGCAAGGCCCTCTACCAGGTGCTCGCCATGGTAGACACCCAGATCGGCT
CTGCCCTCGCTTACAACCACCCTGGGAGACACACTGCCCAGGAAGTGCTC
TCCAAGGACAAGCTTCCGCTCCTCGAGCTCCTGCGCACGTGCATCACTTG
CGTGAGGCGCGTGCCGCCGGCCGACATCGGCATTGTACCGCTGCTGGGCC
TCATCGTGCCCTATTGCTTTCACCTGGACATCAACGTCAAGGTCGAGGCC
AAACACTTCTGCACGGGCTTGCTCTGCACCGTTCCGTCTCTCCGAGCTGT
CCTGCTGGAAGCCCTCTGCAAGGTCGTC
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