mRNA_M-pyrifera_M_contig117948.3714.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig117948.3714.1
Unique NamemRNA_M-pyrifera_M_contig117948.3714.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig117948.3714.1 vs. uniprot
Match: A0A3P3Y609_PLABS (PNPLA domain-containing protein n=2 Tax=Plasmodiophora brassicae TaxID=37360 RepID=A0A3P3Y609_PLABS)

HSP 1 Score: 141 bits (355), Expect = 1.100e-36
Identity = 67/128 (52.34%), Postives = 87/128 (67.97%), Query Frame = 1
Query:    7 TTQFTHAMKMEFFRTAMHTVGRTALCLSGGGSLSMYHTGVIKAMVEHGVMPSVVSGTSGGSICAAMLACKTDEEMVGSVIHPRVSTKYGVRWFAPLPDQLRHFAAHGVLMRNDAFAKTCRAYWGEFTF 390
            T   T   K+ FF +A  TVG TALCLSGGGSLSMYH GV+KA++E   +P  +SGTSGGSI  A++   TDEE++  +I   ++ +YGV WF P+  Q+ HFA  GVLM N  FA TC+AY+ + TF
Sbjct:  222 TPMLTPEEKLAFFESASLTVGHTALCLSGGGSLSMYHMGVVKALLEGNALPRYISGTSGGSIVCAVVGMYTDEELLNDIIREDIAKRYGVSWFEPMASQVLHFATRGVLMDNGFFANTCKAYFKDTTF 349          
BLAST of mRNA_M-pyrifera_M_contig117948.3714.1 vs. uniprot
Match: A0A0G4FZD3_VITBC (PNPLA domain-containing protein n=2 Tax=Vitrella brassicaformis TaxID=1169539 RepID=A0A0G4FZD3_VITBC)

HSP 1 Score: 140 bits (354), Expect = 3.230e-36
Identity = 67/120 (55.83%), Postives = 87/120 (72.50%), Query Frame = 1
Query:   31 KMEFFRTAMHTVGRTALCLSGGGSLSMYHTGVIKAMVEHGVMPSVVSGTSGGSICAAMLACKTDEEMVGSVIHPRVSTKYGVRWFAPLPDQLRHFAAHGVLMRNDAFAKTCRAYWGEFTF 390
            K+ FF     ++GRTALCLSGGG+L+MYH GV+K ++EHG+MP V+SGTSGGSI A MLA  T+EEM   VI P VS +YGVRWF P   Q+ +F   G +M+   F KTC+ Y+G++TF
Sbjct:  445 KLTFFTNLRLSIGRTALCLSGGGALAMYHLGVVKTLMEHGLMPRVISGTSGGSIVAGMLAICTNEEMK-DVIRPDVSERYGVRWFPPFGRQVANFLIGGYMMQTSFFTKTCKVYFGDWTF 563          
BLAST of mRNA_M-pyrifera_M_contig117948.3714.1 vs. uniprot
Match: A0A7S1CAQ2_9STRA (Hypothetical protein (Fragment) n=1 Tax=Bicosoecida sp. CB-2014 TaxID=1486930 RepID=A0A7S1CAQ2_9STRA)

HSP 1 Score: 136 bits (342), Expect = 5.200e-35
Identity = 69/132 (52.27%), Postives = 91/132 (68.94%), Query Frame = 1
Query:   13 QFTHAMKMEFFRTAMHTVGRTALCLSGGGSLSMYHTGVIKAMVEHGVMPSVVSGTSGGSICAAMLACKTDEEMVGSVIHPRVSTKYGVRWFAPLPDQLRHFAAHGV------LMRNDAFAKTCRAYWGEFTF 390
            + T + K  FF +A   +GR+ALCLSGGG+LSM H GV+++++E G MP VVSGTSGGSI AAMLA  TD+EM+  V  P +S K+GVRWF P+  Q+  FA+  +      +M N+ FA TCRAY+G  TF
Sbjct:  132 RLTFSDKAAFFASAKKALGRSALCLSGGGALSMGHLGVVRSLIEAGAMPPVVSGTSGGSIGAAMLAFNTDKEMLEEVCQPDISNKHGVRWFKPVHKQVMSFASTFLSQQGARMMENEDFANTCRAYYGSITF 263          
BLAST of mRNA_M-pyrifera_M_contig117948.3714.1 vs. uniprot
Match: A0A5A8CA36_CAFRO (PNPLA domain-containing protein n=1 Tax=Cafeteria roenbergensis TaxID=33653 RepID=A0A5A8CA36_CAFRO)

HSP 1 Score: 134 bits (338), Expect = 1.740e-34
Identity = 65/126 (51.59%), Postives = 89/126 (70.63%), Query Frame = 1
Query:   31 KMEFFRTAMHTVGRTALCLSGGGSLSMYHTGVIKAMVEHGVMPSVVSGTSGGSICAAMLACKTDEEMVGSVIHPRVSTKYGVRWFAPLPDQLRHFAAHGVL------MRNDAFAKTCRAYWGEFTF 390
            K+EFF  A   +GRTALCLSGGG+L+MYH GV++A+++   MP +VSGTSGG+I A MLA +TD+EMV  VI   ++ +YGV WF P+P Q+  FAA  +       MR++ FA TC+ Y+G +TF
Sbjct:  234 KLEFFEGARLAMGRTALCLSGGGALAMYHMGVVRALIQADAMPRIVSGTSGGAIVAGMLAIRTDKEMVDDVIASDIADRYGVTWFDPIPTQVATFAASLLTSDRPHTMRSERFAATCKRYFGAYTF 359          
BLAST of mRNA_M-pyrifera_M_contig117948.3714.1 vs. uniprot
Match: A0A0M0K308_9EUKA (PNPLA domain-containing protein n=1 Tax=Chrysochromulina tobinii TaxID=1460289 RepID=A0A0M0K308_9EUKA)

HSP 1 Score: 135 bits (340), Expect = 2.470e-34
Identity = 61/119 (51.26%), Postives = 86/119 (72.27%), Query Frame = 1
Query:   34 MEFFRTAMHTVGRTALCLSGGGSLSMYHTGVIKAMVEHGVMPSVVSGTSGGSICAAMLACKTDEEMVGSVIHPRVSTKYGVRWFAPLPDQLRHFAAHGVLMRNDAFAKTCRAYWGEFTF 390
            ++FF  ++  +G TALCLSGGGSL+MYH GVIK ++E+  MPS+V+GTSGG+I A MLA  +DEEM+  VI P ++ +Y  RWF P+  QL ++  +G L+ +D FA  CR Y+G+ TF
Sbjct:  278 IDFFERSIVCLGHTALCLSGGGSLAMYHMGVIKTLIENECMPSIVTGTSGGAIIAGMLAISSDEEMLEKVIQPDIAVRYPERWFPPMEQQLFNYVRNGCLVEHDEFANCCRRYYGDVTF 396          
BLAST of mRNA_M-pyrifera_M_contig117948.3714.1 vs. uniprot
Match: A0A5A8CB75_CAFRO (PNPLA domain-containing protein n=3 Tax=Cafeteria roenbergensis TaxID=33653 RepID=A0A5A8CB75_CAFRO)

HSP 1 Score: 134 bits (337), Expect = 5.940e-34
Identity = 65/126 (51.59%), Postives = 89/126 (70.63%), Query Frame = 1
Query:   31 KMEFFRTAMHTVGRTALCLSGGGSLSMYHTGVIKAMVEHGVMPSVVSGTSGGSICAAMLACKTDEEMVGSVIHPRVSTKYGVRWFAPLPDQLRHFAAHGVL------MRNDAFAKTCRAYWGEFTF 390
            K+EFF  A   +GRTALCLSGGG+L+MYH GV++A+++   MP +VSGTSGG+I A MLA +TD+EMV  VI   ++ +YGV WF P+P Q+  FAA  +       MR++ FA TC+ Y+G +TF
Sbjct:  294 KLEFFEGARLAMGRTALCLSGGGALAMYHMGVVRALIQADAMPRIVSGTSGGAIVAGMLAIRTDKEMVEDVIASDIADRYGVTWFDPIPTQVATFAASLLTSDRPHTMRSERFAATCKRYFGAYTF 419          
BLAST of mRNA_M-pyrifera_M_contig117948.3714.1 vs. uniprot
Match: A0A7S0PEZ4_CAFRO (Hypothetical protein (Fragment) n=1 Tax=Cafeteria roenbergensis TaxID=33653 RepID=A0A7S0PEZ4_CAFRO)

HSP 1 Score: 132 bits (332), Expect = 7.370e-34
Identity = 64/126 (50.79%), Postives = 88/126 (69.84%), Query Frame = 1
Query:   31 KMEFFRTAMHTVGRTALCLSGGGSLSMYHTGVIKAMVEHGVMPSVVSGTSGGSICAAMLACKTDEEMVGSVIHPRVSTKYGVRWFAPLPDQLRHFAAHGVL------MRNDAFAKTCRAYWGEFTF 390
            K+EF   A   +GRTALCLSGGG+L+MYH GV++A+++   MP +VSGTSGG+I A MLA +TD+EMV  VI   ++ +YGV WF P+P Q+  FAA  +       MR++ FA TC+ Y+G +TF
Sbjct:  294 KLEFLEGARLAMGRTALCLSGGGALAMYHMGVVRALIQADAMPRIVSGTSGGAIVAGMLAIRTDKEMVDDVIASDIADRYGVTWFDPIPTQVATFAASLLTSDRPHTMRSERFAATCKRYFGAYTF 419          
BLAST of mRNA_M-pyrifera_M_contig117948.3714.1 vs. uniprot
Match: A0A1J4MAZ5_9CRYT (PNPLA domain-containing protein n=1 Tax=Cryptosporidium ubiquitum TaxID=857276 RepID=A0A1J4MAZ5_9CRYT)

HSP 1 Score: 133 bits (334), Expect = 1.510e-33
Identity = 58/111 (52.25%), Postives = 81/111 (72.97%), Query Frame = 1
Query:   58 HTVGRTALCLSGGGSLSMYHTGVIKAMVEHGVMPSVVSGTSGGSICAAMLACKTDEEMVGSVIHPRVSTKYGVRWFAPLPDQLRHFAAHGVLMRNDAFAKTCRAYWGEFTF 390
            H+ G+TALCLSGGG+L+MYH GV+K ++E  +MP +++GTSGGSI AA+LA K++EE++   I P VS  +G RWF PL DQ+RHF   G ++    F KTC+ Y+  +TF
Sbjct:  442 HSTGKTALCLSGGGALAMYHLGVVKVLLEQNIMPKIINGTSGGSIVAALLATKSNEEILNEYIKPTVSNMHGHRWFPPLLDQIRHFLVKGYMIDPKEFIKTCQTYFKNYTF 552          
BLAST of mRNA_M-pyrifera_M_contig117948.3714.1 vs. uniprot
Match: Q5CT82_CRYPI (PNPLA domain-containing protein n=4 Tax=Cryptosporidium TaxID=5806 RepID=Q5CT82_CRYPI)

HSP 1 Score: 132 bits (332), Expect = 2.870e-33
Identity = 58/111 (52.25%), Postives = 81/111 (72.97%), Query Frame = 1
Query:   58 HTVGRTALCLSGGGSLSMYHTGVIKAMVEHGVMPSVVSGTSGGSICAAMLACKTDEEMVGSVIHPRVSTKYGVRWFAPLPDQLRHFAAHGVLMRNDAFAKTCRAYWGEFTF 390
            H+ G+TALCLSGGG+L+MYH GV+K ++E  +MP +++GTSGGSI AA+LA K++EE++   I P VS  +G RWF PL DQ+RHF   G ++    F KTC+ Y+  +TF
Sbjct:  469 HSTGKTALCLSGGGALAMYHLGVVKVLLEQDIMPKIINGTSGGSIVAAILATKSNEEILNEYIKPTVSNMHGHRWFPPLLDQIRHFLVKGYMIDPKEFIKTCQTYFKNYTF 579          
BLAST of mRNA_M-pyrifera_M_contig117948.3714.1 vs. uniprot
Match: H3GR10_PHYRM (PNPLA domain-containing protein n=1 Tax=Phytophthora ramorum TaxID=164328 RepID=H3GR10_PHYRM)

HSP 1 Score: 131 bits (330), Expect = 4.930e-33
Identity = 62/126 (49.21%), Postives = 90/126 (71.43%), Query Frame = 1
Query:   13 QFTHAMKMEFFRTAMHTVGRTALCLSGGGSLSMYHTGVIKAMVEHGVMPSVVSGTSGGSICAAMLACKTDEEMVGSVIHPRVSTKY---GVRWFAPLPDQLRHFAAHGVLMRNDAFAKTCRAYWGE 381
            +F  A K++FF+    + G TALCLSGGGS++MYH G+IKA++E  VMP++VSG+SGG+I AAM+ACKT++E++  +I   VST++   G+RWF PL DQ+ H    G L+    F +T + Y+GE
Sbjct:  336 EFPRAEKIDFFKHMKQSFGSTALCLSGGGSIAMYHKGIIKALLEADVMPNIVSGSSGGAITAAMVACKTNKELLDDIIQDDVSTRFIPLGIRWFPPLLDQITHCIKTGFLIECSTFERTTQHYYGE 461          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig117948.3714.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A3P3Y609_PLABS1.100e-3652.34PNPLA domain-containing protein n=2 Tax=Plasmodiop... [more]
A0A0G4FZD3_VITBC3.230e-3655.83PNPLA domain-containing protein n=2 Tax=Vitrella b... [more]
A0A7S1CAQ2_9STRA5.200e-3552.27Hypothetical protein (Fragment) n=1 Tax=Bicosoecid... [more]
A0A5A8CA36_CAFRO1.740e-3451.59PNPLA domain-containing protein n=1 Tax=Cafeteria ... [more]
A0A0M0K308_9EUKA2.470e-3451.26PNPLA domain-containing protein n=1 Tax=Chrysochro... [more]
A0A5A8CB75_CAFRO5.940e-3451.59PNPLA domain-containing protein n=3 Tax=Cafeteria ... [more]
A0A7S0PEZ4_CAFRO7.370e-3450.79Hypothetical protein (Fragment) n=1 Tax=Cafeteria ... [more]
A0A1J4MAZ5_9CRYT1.510e-3352.25PNPLA domain-containing protein n=1 Tax=Cryptospor... [more]
Q5CT82_CRYPI2.870e-3352.25PNPLA domain-containing protein n=4 Tax=Cryptospor... [more]
H3GR10_PHYRM4.930e-3349.21PNPLA domain-containing protein n=1 Tax=Phytophtho... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig117948contigM-pyrifera_M_contig117948:2..391 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score133.3
Seed ortholog evalue8.4e-29
Seed eggNOG ortholog164328.Phyra79285
KEGG rclassRC00004,RC00020,RC00037,RC00041,RC00055,RC00094,RC00523
KEGG koko:K14674
KEGG ReactionR01315,R01317,R01462,R02053,R02241,R02250,R02687,R07064,R07379,R07387,R07859
KEGG Pathwayko00100,ko00561,ko00564,ko00565,ko00590,ko00591,ko00592,ko01100,ko01110,map00100,map00561,map00564,map00565,map00590,map00591,map00592,map01100,map01110
KEGG ModuleM00089,M00098
Hectar predicted targeting categoryother localisation
EggNOG free text desc.Domain of unknown function (DUF3336)
EggNOG OGs3QEGQ@4776,COG1752@1,KOG2214@2759
EC2.3.1.51,3.1.1.13,3.1.1.3,3.1.1.4
COG Functional cat.C
Best tax levelPeronosporales
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000
Exons1
Model size390
Cds size390
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815697.9788191-CDS-M-pyrifera_M_contig117948:1..3911622815697.9788191-CDS-M-pyrifera_M_contig117948:1..391Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig117948 2..391 -
1692277527.1502497-CDS-M-pyrifera_M_contig117948:1..3911692277527.1502497-CDS-M-pyrifera_M_contig117948:1..391Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig117948 2..391 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig117948.3714.1prot_M-pyrifera_M_contig117948.3714.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig117948 2..391 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig117948.3714.1

>prot_M-pyrifera_M_contig117948.3714.1 ID=prot_M-pyrifera_M_contig117948.3714.1|Name=mRNA_M-pyrifera_M_contig117948.3714.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=130bp
MTTTQFTHAMKMEFFRTAMHTVGRTALCLSGGGSLSMYHTGVIKAMVEHG
VMPSVVSGTSGGSICAAMLACKTDEEMVGSVIHPRVSTKYGVRWFAPLPD
QLRHFAAHGVLMRNDAFAKTCRAYWGEFTF
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mRNA from alignment at M-pyrifera_M_contig117948:2..391-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig117948.3714.1 ID=mRNA_M-pyrifera_M_contig117948.3714.1|Name=mRNA_M-pyrifera_M_contig117948.3714.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=390bp|location=Sequence derived from alignment at M-pyrifera_M_contig117948:2..391- (Macrocystis pyrifera P11B4 male)
ATGACAACGACGCAGTTCACGCACGCCATGAAAATGGAGTTTTTCCGCAC GGCCATGCACACCGTGGGCCGCACCGCGCTGTGCCTCAGCGGCGGCGGTT CGCTGTCCATGTACCACACTGGCGTGATCAAGGCGATGGTGGAGCACGGG GTGATGCCCAGCGTGGTGAGCGGCACGAGCGGCGGCAGCATCTGCGCGGC CATGCTGGCGTGCAAGACGGACGAGGAGATGGTGGGCTCCGTGATCCACC CGCGGGTGTCGACCAAGTACGGCGTGCGCTGGTTTGCGCCGCTGCCGGAC CAGCTGCGGCACTTTGCGGCGCACGGCGTGCTGATGCGCAACGACGCGTT CGCCAAGACGTGCCGCGCGTACTGGGGCGAGTTCACCTTT
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig117948:2..391-

>mRNA_M-pyrifera_M_contig117948.3714.1 ID=mRNA_M-pyrifera_M_contig117948.3714.1|Name=mRNA_M-pyrifera_M_contig117948.3714.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=780bp|location=Sequence derived from alignment at M-pyrifera_M_contig117948:2..391- (Macrocystis pyrifera P11B4 male)
ATGACAACGACGCAGTTCACGCACGCCATGAAAATGGAGTTTTTCCGCAC
GGCCATGCACACCGTGGGCCGCACCGCGCTGTGCCTCAGCGGCGGCGGTT
CGCTGTCCATGTACCACACTGGCGTGATCAAGGCGATGGTGGAGCACGGG
GTGATGCCCAGCGTGGTGAGCGGCACGAGCGGCGGCAGCATCTGCGCGGC
CATGCTGGCGTGCAAGACGGACGAGGAGATGGTGGGCTCCGTGATCCACC
CGCGGGTGTCGACCAAGTACGGCGTGCGCTGGTTTGCGCCGCTGCCGGAC
CAGCTGCGGCACTTTGCGGCGCACGGCGTGCTGATGCGCAACGACGCGTT
CGCCAAGACGTGCCGCGCGTACTGGGGCGAGTTCACCTTTATGACAACGA
CGCAGTTCACGCACGCCATGAAAATGGAGTTTTTCCGCACGGCCATGCAC
ACCGTGGGCCGCACCGCGCTGTGCCTCAGCGGCGGCGGTTCGCTGTCCAT
GTACCACACTGGCGTGATCAAGGCGATGGTGGAGCACGGGGTGATGCCCA
GCGTGGTGAGCGGCACGAGCGGCGGCAGCATCTGCGCGGCCATGCTGGCG
TGCAAGACGGACGAGGAGATGGTGGGCTCCGTGATCCACCCGCGGGTGTC
GACCAAGTACGGCGTGCGCTGGTTTGCGCCGCTGCCGGACCAGCTGCGGC
ACTTTGCGGCGCACGGCGTGCTGATGCGCAACGACGCGTTCGCCAAGACG
TGCCGCGCGTACTGGGGCGAGTTCACCTTT
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