mRNA_M-pyrifera_M_contig117944.3713.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig117944.3713.1
Unique NamemRNA_M-pyrifera_M_contig117944.3713.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig117944.3713.1 vs. uniprot
Match: UPI001F3BB9E9 (ATP-binding protein n=1 Tax=Yinghuangia sp. KLBMP8922 TaxID=2908204 RepID=UPI001F3BB9E9)

HSP 1 Score: 58.9 bits (141), Expect = 3.610e-8
Identity = 41/105 (39.05%), Postives = 57/105 (54.29%), Query Frame = 1
Query:    1 PTTAELAP-----LRSSLRGFLAESDEPADEWLLIATELVTNAIEAAPDASVIHIDLEVGDEWVELQVVDMGAGFELDPASSVPV--ANHRGRGLMMVNALSDDF 294
            P T E  P     LR S+R  +A   EP D   L+ +ELVTNA++ AP  S + ++L      + + V D GA   L P    PV  A+  GRGLM+V AL++D+
Sbjct:   78 PATVEAVPRARHALRGSVRADIAA--EPLDTLELLVSELVTNAVQHAPQTSTVTVELLRTGRTLRIAVTDAGA---LLPRPRTPVQSADEHGRGLMLVEALAEDW 177          
BLAST of mRNA_M-pyrifera_M_contig117944.3713.1 vs. uniprot
Match: A0A7V9LPZ2_9ACTN (SpoIIE family protein phosphatase n=1 Tax=Nocardioidaceae bacterium TaxID=1871072 RepID=A0A7V9LPZ2_9ACTN)

HSP 1 Score: 57.0 bits (136), Expect = 5.260e-7
Identity = 43/121 (35.54%), Postives = 60/121 (49.59%), Query Frame = 1
Query:   10 AELAPLRSSLRGFLAESDEPADEWLLIATELVTNAIEAAPDASVIHIDLEVGDEWVELQVVDMG--------AGFELDPASSVPVANHRGRGLMMVNALSDDFSV-SIEDGLTVATVRRRR 345
            A +   R  L  +L E D   D+ +L+A EL+ NA+  A   +V+ + L+   + V L+V D G        AG+ L    S      RGRGL +V A+SD+ S  S EDG  V  V R R
Sbjct:  800 AGIRAARHGLMAWLVEQDVEVDDPVLVAAELLANAVVVARSTAVLSVTLDEEGDRVVLEVSDDGDGSDHVRTAGWRLPATDS-----ERGRGLYLVRAVSDEVSTTSSEDGTVVRCVIRLR 915          
BLAST of mRNA_M-pyrifera_M_contig117944.3713.1 vs. uniprot
Match: UPI00200B3968 (ATP-binding protein n=1 Tax=Streptomyces lichenis TaxID=2306967 RepID=UPI00200B3968)

HSP 1 Score: 53.5 bits (127), Expect = 1.900e-6
Identity = 31/82 (37.80%), Postives = 46/82 (56.10%), Query Frame = 1
Query:   64 EPADEWLLIATELVTNAIEAAPDASVIHID-LEVGDEWVELQVVDMGAGFELDPASSVPVANHRGRGLMMVNALSDDFSVSI 306
            E  D+  L+ TELV NA++ APD + I +  + +    + + VVD GA   L P  +      RGRGL++V ALSD + V +
Sbjct:   53 ELVDDAALVVTELVANAVDHAPDGATIRVAVIRIRTTRIRISVVD-GAAHRLPPLRAAGPDAERGRGLLLVEALSDQWGVDL 133          
BLAST of mRNA_M-pyrifera_M_contig117944.3713.1 vs. uniprot
Match: A0A838JZ42_9ACTN (ATP-binding protein n=1 Tax=Euzebyaceae bacterium TaxID=2740542 RepID=A0A838JZ42_9ACTN)

HSP 1 Score: 52.8 bits (125), Expect = 2.520e-6
Identity = 35/94 (37.23%), Postives = 48/94 (51.06%), Query Frame = 1
Query:   64 EPADEWLLIATELVTNAIEAAPDASVIHIDLEVGDEWVELQVVDMGAGFELDPASSVPVANHR-GRGLMMVNALSDDFSVSIEDGLTVATVRRR 342
            E  D+  L  TE   NA+  A  A+   + L VG E  E+ V+DMG GF+  P +S   A+   GRGL ++ AL DD     ED  T   + +R
Sbjct:   20 EAIDDIQLAVTEACGNAVRHATGAAEYSVRLGVGVEACEVDVIDMGPGFDPPPLTSPTHADFETGRGLYLIQALVDDLQFIREDHATHVRLVKR 113          
BLAST of mRNA_M-pyrifera_M_contig117944.3713.1 vs. uniprot
Match: A0A1H8PTG6_9PSEU (Anti-sigma regulatory factor (Ser/Thr protein kinase) n=1 Tax=Amycolatopsis saalfeldensis TaxID=394193 RepID=A0A1H8PTG6_9PSEU)

HSP 1 Score: 50.8 bits (120), Expect = 1.560e-5
Identity = 36/103 (34.95%), Postives = 54/103 (52.43%), Query Frame = 1
Query:   10 AELAPLRSSLRGFLAESD-EPADEWLLIATELVTNAIEAAPDASVIHIDLEVGDEWVELQVVDMGAGFELDPASSVPVANHRGRGLMMVNALSDDFSVSIEDG 315
            + LAPLR  +R  L     E   +  L+ATELVTNA E A     + ++L      + L+V D         A++ P  ++RGRGL++V+ALS  +  +  DG
Sbjct:   19 SSLAPLRKWVRARLTGLPRETVQDAELLATELVTNAFEHAGGPMALRLELPDDHTVIRLEVEDCAPNLLPTTATASP-DSYRGRGLLLVDALSAGWGAATRDG 120          
BLAST of mRNA_M-pyrifera_M_contig117944.3713.1 vs. uniprot
Match: A0A1Q5HQ47_9ACTN (HATPase_c domain-containing protein n=2 Tax=Streptomyces sp. CB02009 TaxID=1703938 RepID=A0A1Q5HQ47_9ACTN)

HSP 1 Score: 50.4 bits (119), Expect = 2.420e-5
Identity = 30/88 (34.09%), Postives = 50/88 (56.82%), Query Frame = 1
Query:   82 LLIATELVTNAIEAAPDASVIHIDLEVGDEWVELQVVDMGAGFELDPASSVPVANHRGRGLMMVNALSDDFSVSIEDGLTVATVRRRR 345
            LL+A+ELVTNA+E A    V+H+  +  D+ + + V D G   +    ++    +  GRGL++V +L+DD+ + +    T AT R  R
Sbjct:   50 LLVASELVTNAVEHAQAPIVLHLSRQHADDQLWIGVTDGGPADQEGAWTTSCTPDEHGRGLILVESLTDDYGI-LTHATTPATTRWAR 136          
BLAST of mRNA_M-pyrifera_M_contig117944.3713.1 vs. uniprot
Match: A0A7V9R0Z9_9ACTN (SpoIIE family protein phosphatase n=1 Tax=Nocardioidaceae bacterium TaxID=1871072 RepID=A0A7V9R0Z9_9ACTN)

HSP 1 Score: 52.0 bits (123), Expect = 2.960e-5
Identity = 41/114 (35.96%), Postives = 64/114 (56.14%), Query Frame = 1
Query:   28 RSSLRGFLAESDEPADEWLLIATELVTNAIEAAPDASVIHIDLEVGDEWVELQVVDMGAGFE-LDPAS-SVPVAN-HRGRGLMMVNALSDDFSVSIEDGLTVA--TVRRRRATP 354
            R  L  +L      AD+ +L+A+EL+ NA+ AA  + V+   ++  D+ + L+V D G+G + LD    ++P  +  RGRGL +V ALSDD S+      TVA   V  R++ P
Sbjct:  789 RRGLGEWLGNQRRDADDAVLVASELMANAVMAASTSVVLTAVMK--DDQLVLEVTDDGSGHDHLDQLGLTLPATDCERGRGLFLVRALSDDVSILSSPTGTVARCVVPARQSAP 900          
BLAST of mRNA_M-pyrifera_M_contig117944.3713.1 vs. uniprot
Match: A0A7Y2WSH7_9ACTN (ATP-binding protein n=2 Tax=unclassified Streptomyces TaxID=2593676 RepID=A0A7Y2WSH7_9ACTN)

HSP 1 Score: 50.1 bits (118), Expect = 3.500e-5
Identity = 32/87 (36.78%), Postives = 48/87 (55.17%), Query Frame = 1
Query:   64 EPADEWLLIATELVTNAIEAAPDASVIHIDLEVGDEWVELQVVDMGAGFELDPASSVPVANHRGRGLMMVNALSDDFSV-SIEDGLT 321
            E AD  L++ +ELVTNA+E A    ++H+  E  D  V ++V D G      P +S   A+  GRGL +V+AL++      +E G T
Sbjct:   47 ETADAVLMVVSELVTNAVEHARPPLMLHLHREEDDGRVCIEVTDNGPAPHDGPWTSSCAADEHGRGLAIVDALTEAHGTHGVEGGRT 133          
BLAST of mRNA_M-pyrifera_M_contig117944.3713.1 vs. uniprot
Match: UPI0018DB7791 (ATP-binding protein n=1 Tax=Kitasatospora azatica TaxID=58347 RepID=UPI0018DB7791)

HSP 1 Score: 50.4 bits (119), Expect = 4.350e-5
Identity = 32/83 (38.55%), Postives = 50/83 (60.24%), Query Frame = 1
Query:   85 LIATELVTNAIEAAPDASVIHIDLEVGDEWVELQVVDMGAGFELDPASSVPVANHRGRGLMMVNALSDDF--SVSIEDGLTVA 327
            L+A+ELVTNAI+ APD   I I +++ ++W+ L V D  A +   PA  VP +   GRGL++V  L+  +  +   + G TV+
Sbjct:   53 LVASELVTNAIQHAPDQRPITITVDLDEQWLSLAVRDHSADWPR-PAEPVP-SQENGRGLLLVGRLAGSWHCAAHTDGGKTVS 133          
BLAST of mRNA_M-pyrifera_M_contig117944.3713.1 vs. uniprot
Match: UPI00068D67C7 (ATP-binding protein n=1 Tax=Streptomyces sp. NRRL WC-3626 TaxID=1463926 RepID=UPI00068D67C7)

HSP 1 Score: 50.1 bits (118), Expect = 4.850e-5
Identity = 39/114 (34.21%), Postives = 59/114 (51.75%), Query Frame = 1
Query:    4 TTAELAPLRSSLRGFLAE---SDEPADEWLLIATELVTNAI-EAAPDASVIHIDLEVGDEWVELQVVDMGAGFELDPASSVPVANHRGRGLMMVNALSDDFSVSIEDGLTVATV 333
            T A +   R+ +R  L     +DE  D  +++ +ELVTNA+  AA D  V  + L  G   V ++V D   G +L         +  GRGL++V+ALSDD++V+   G    TV
Sbjct:   45 TAASVGAARAGVRELLRAWDVADEVRDNAVIVTSELVTNALTHAAGDRVVCRVRLLAG--RVRIEVEDEARGPDLPMLRRPGPDDQSGRGLLLVDALSDDWAVTRTPGQPGRTV 156          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig117944.3713.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 10
Match NameE-valueIdentityDescription
UPI001F3BB9E93.610e-839.05ATP-binding protein n=1 Tax=Yinghuangia sp. KLBMP8... [more]
A0A7V9LPZ2_9ACTN5.260e-735.54SpoIIE family protein phosphatase n=1 Tax=Nocardio... [more]
UPI00200B39681.900e-637.80ATP-binding protein n=1 Tax=Streptomyces lichenis ... [more]
A0A838JZ42_9ACTN2.520e-637.23ATP-binding protein n=1 Tax=Euzebyaceae bacterium ... [more]
A0A1H8PTG6_9PSEU1.560e-534.95Anti-sigma regulatory factor (Ser/Thr protein kina... [more]
A0A1Q5HQ47_9ACTN2.420e-534.09HATPase_c domain-containing protein n=2 Tax=Strept... [more]
A0A7V9R0Z9_9ACTN2.960e-535.96SpoIIE family protein phosphatase n=1 Tax=Nocardio... [more]
A0A7Y2WSH7_9ACTN3.500e-536.78ATP-binding protein n=2 Tax=unclassified Streptomy... [more]
UPI0018DB77914.350e-538.55ATP-binding protein n=1 Tax=Kitasatospora azatica ... [more]
UPI00068D67C74.850e-534.21ATP-binding protein n=1 Tax=Streptomyces sp. NRRL ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig117944contigM-pyrifera_M_contig117944:21..377 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size357
Cds size357
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815697.9481544-CDS-M-pyrifera_M_contig117944:20..3771622815697.9481544-CDS-M-pyrifera_M_contig117944:20..377Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig117944 21..377 +
1692277527.1367178-CDS-M-pyrifera_M_contig117944:20..3771692277527.1367178-CDS-M-pyrifera_M_contig117944:20..377Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig117944 21..377 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig117944.3713.1prot_M-pyrifera_M_contig117944.3713.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig117944 21..377 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig117944.3713.1

>prot_M-pyrifera_M_contig117944.3713.1 ID=prot_M-pyrifera_M_contig117944.3713.1|Name=mRNA_M-pyrifera_M_contig117944.3713.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=119bp
PTTAELAPLRSSLRGFLAESDEPADEWLLIATELVTNAIEAAPDASVIHI
DLEVGDEWVELQVVDMGAGFELDPASSVPVANHRGRGLMMVNALSDDFSV
SIEDGLTVATVRRRRATP*
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mRNA from alignment at M-pyrifera_M_contig117944:21..377+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig117944.3713.1 ID=mRNA_M-pyrifera_M_contig117944.3713.1|Name=mRNA_M-pyrifera_M_contig117944.3713.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=357bp|location=Sequence derived from alignment at M-pyrifera_M_contig117944:21..377+ (Macrocystis pyrifera P11B4 male)
CCGACGACCGCCGAACTTGCGCCACTGCGCTCATCGCTCCGCGGCTTCCT CGCCGAGAGCGACGAACCGGCCGACGAGTGGCTGCTGATCGCCACCGAAC TCGTCACCAACGCCATCGAAGCCGCACCCGACGCCAGCGTCATCCACATC GACCTCGAGGTCGGCGACGAGTGGGTCGAACTCCAGGTCGTCGACATGGG GGCGGGATTCGAGCTCGACCCCGCATCATCGGTGCCGGTGGCCAACCATC GGGGTCGAGGCCTCATGATGGTCAATGCGCTGTCGGACGACTTCAGCGTC TCCATCGAGGACGGGCTCACCGTGGCGACTGTCAGACGGCGGAGAGCGAC GCCGTAG
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig117944:21..377+

>mRNA_M-pyrifera_M_contig117944.3713.1 ID=mRNA_M-pyrifera_M_contig117944.3713.1|Name=mRNA_M-pyrifera_M_contig117944.3713.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=714bp|location=Sequence derived from alignment at M-pyrifera_M_contig117944:21..377+ (Macrocystis pyrifera P11B4 male)
CCGACGACCGCCGAACTTGCGCCACTGCGCTCATCGCTCCGCGGCTTCCT
CGCCGAGAGCGACGAACCGGCCGACGAGTGGCTGCTGATCGCCACCGAAC
TCGTCACCAACGCCATCGAAGCCGCACCCGACGCCAGCGTCATCCACATC
GACCTCGAGGTCGGCGACGAGTGGGTCGAACTCCAGGTCGTCGACATGGG
GGCGGGATTCGAGCTCGACCCCGCATCATCGGTGCCGGTGGCCAACCATC
GGGGTCGAGGCCTCATGATGGTCAATGCGCTGTCGGACGACTTCAGCGTC
TCCATCGAGGACGGGCTCACCGTGGCGACTGTCAGACGGCGGAGAGCGAC
GCCGTAGCCGACGACCGCCGAACTTGCGCCACTGCGCTCATCGCTCCGCG
GCTTCCTCGCCGAGAGCGACGAACCGGCCGACGAGTGGCTGCTGATCGCC
ACCGAACTCGTCACCAACGCCATCGAAGCCGCACCCGACGCCAGCGTCAT
CCACATCGACCTCGAGGTCGGCGACGAGTGGGTCGAACTCCAGGTCGTCG
ACATGGGGGCGGGATTCGAGCTCGACCCCGCATCATCGGTGCCGGTGGCC
AACCATCGGGGTCGAGGCCTCATGATGGTCAATGCGCTGTCGGACGACTT
CAGCGTCTCCATCGAGGACGGGCTCACCGTGGCGACTGTCAGACGGCGGA
GAGCGACGCCGTAG
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