mRNA_M-pyrifera_M_contig117943.3712.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig117943.3712.1
Unique NamemRNA_M-pyrifera_M_contig117943.3712.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig117943.3712.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig117943contigM-pyrifera_M_contig117943:95..547 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score84.3
Seed ortholog evalue5.2e-14
Seed eggNOG ortholog55529.EKX53999
Hectar predicted targeting categoryother localisation
EggNOG OGs2EKSF@1,2SQKE@2759
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons1
Model size453
Cds size453
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815697.9050076-CDS-M-pyrifera_M_contig117943:94..5471622815697.9050076-CDS-M-pyrifera_M_contig117943:94..547Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig117943 95..547 +
1692277527.1221266-CDS-M-pyrifera_M_contig117943:94..5471692277527.1221266-CDS-M-pyrifera_M_contig117943:94..547Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig117943 95..547 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig117943.3712.1prot_M-pyrifera_M_contig117943.3712.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig117943 95..547 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig117943.3712.1

>prot_M-pyrifera_M_contig117943.3712.1 ID=prot_M-pyrifera_M_contig117943.3712.1|Name=mRNA_M-pyrifera_M_contig117943.3712.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=151bp
VIQGTRLKPELTVRAFSGAAHTGLTAVVTVTYEDESSDISDLRFDGSTQQ
YVATKFFAADVLGAVSFQYSMRLFVVGIGEVSFAVSSEKTVGYNMQVSAN
AVHDMTGQVVQEGKDVSVGTTFNFEITMSNVAEPSITEGDFNLIFSVLDS
A
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mRNA from alignment at M-pyrifera_M_contig117943:95..547+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig117943.3712.1 ID=mRNA_M-pyrifera_M_contig117943.3712.1|Name=mRNA_M-pyrifera_M_contig117943.3712.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=453bp|location=Sequence derived from alignment at M-pyrifera_M_contig117943:95..547+ (Macrocystis pyrifera P11B4 male)
GTCATTCAGGGCACTCGCCTCAAGCCTGAGCTGACTGTGCGTGCCTTCAG
CGGTGCTGCCCACACTGGCCTCACCGCCGTCGTGACCGTGACCTACGAGG
ACGAGAGCTCGGATATCTCCGACCTCAGGTTTGACGGCAGCACGCAGCAG
TACGTTGCCACCAAGTTCTTTGCTGCCGATGTTCTTGGCGCTGTCTCCTT
CCAGTACAGCATGCGCCTGTTCGTGGTCGGCATCGGCGAGGTTAGCTTCG
CCGTCAGCTCTGAGAAGACCGTGGGTTACAACATGCAGGTCTCGGCCAAC
GCCGTGCATGACATGACTGGCCAGGTTGTCCAGGAGGGCAAGGACGTCTC
TGTTGGTACCACTTTCAACTTCGAGATCACCATGTCCAACGTTGCTGAGC
CTTCGATCACCGAGGGAGACTTCAACCTCATTTTCAGCGTCCTCGACTCT
GCC
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig117943:95..547+

>mRNA_M-pyrifera_M_contig117943.3712.1 ID=mRNA_M-pyrifera_M_contig117943.3712.1|Name=mRNA_M-pyrifera_M_contig117943.3712.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=906bp|location=Sequence derived from alignment at M-pyrifera_M_contig117943:95..547+ (Macrocystis pyrifera P11B4 male)
GTCATTCAGGGCACTCGCCTCAAGCCTGAGCTGACTGTGCGTGCCTTCAG
CGGTGCTGCCCACACTGGCCTCACCGCCGTCGTGACCGTGACCTACGAGG
ACGAGAGCTCGGATATCTCCGACCTCAGGTTTGACGGCAGCACGCAGCAG
TACGTTGCCACCAAGTTCTTTGCTGCCGATGTTCTTGGCGCTGTCTCCTT
CCAGTACAGCATGCGCCTGTTCGTGGTCGGCATCGGCGAGGTTAGCTTCG
CCGTCAGCTCTGAGAAGACCGTGGGTTACAACATGCAGGTCTCGGCCAAC
GCCGTGCATGACATGACTGGCCAGGTTGTCCAGGAGGGCAAGGACGTCTC
TGTTGGTACCACTTTCAACTTCGAGATCACCATGTCCAACGTTGCTGAGC
CTTCGATCACCGAGGGAGACTTCAACCTCATTTTCAGCGTCCTCGACTCT
GCCGTCATTCAGGGCACTCGCCTCAAGCCTGAGCTGACTGTGCGTGCCTT
CAGCGGTGCTGCCCACACTGGCCTCACCGCCGTCGTGACCGTGACCTACG
AGGACGAGAGCTCGGATATCTCCGACCTCAGGTTTGACGGCAGCACGCAG
CAGTACGTTGCCACCAAGTTCTTTGCTGCCGATGTTCTTGGCGCTGTCTC
CTTCCAGTACAGCATGCGCCTGTTCGTGGTCGGCATCGGCGAGGTTAGCT
TCGCCGTCAGCTCTGAGAAGACCGTGGGTTACAACATGCAGGTCTCGGCC
AACGCCGTGCATGACATGACTGGCCAGGTTGTCCAGGAGGGCAAGGACGT
CTCTGTTGGTACCACTTTCAACTTCGAGATCACCATGTCCAACGTTGCTG
AGCCTTCGATCACCGAGGGAGACTTCAACCTCATTTTCAGCGTCCTCGAC
TCTGCC
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