mRNA_M-pyrifera_M_contig117937.3707.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig117937.3707.1
Unique NamemRNA_M-pyrifera_M_contig117937.3707.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig117937.3707.1 vs. uniprot
Match: A0A8J9RM56_9CHLO (General transcription factor 3C polypeptide 5 at N-terminal half n=1 Tax=Coccomyxa sp. Obi TaxID=2315456 RepID=A0A8J9RM56_9CHLO)

HSP 1 Score: 67.8 bits (164), Expect = 1.540e-10
Identity = 33/68 (48.53%), Postives = 43/68 (63.24%), Query Frame = 1
Query:  208 AGRKVWARSALAVRVPESLAGELGQALPYVAYRFRNGPFRSSWCPFGYDPRTDSSTAMYQSIDYRMTE 411
            A R VW  +AL  RV      E    LP +AY FRNGP+R  W   G+DPR+DSS+ MYQ+++YR+ E
Sbjct:  223 AQRPVWTSAALKERVSGFTDPEFEWMLPRIAYMFRNGPWRGLWVRRGFDPRSDSSSRMYQALEYRVEE 290          
BLAST of mRNA_M-pyrifera_M_contig117937.3707.1 vs. uniprot
Match: A0A6P8HPX3_ACTTE (general transcription factor 3C polypeptide 5-like n=1 Tax=Actinia tenebrosa TaxID=6105 RepID=A0A6P8HPX3_ACTTE)

HSP 1 Score: 67.4 bits (163), Expect = 2.020e-10
Identity = 30/64 (46.88%), Postives = 42/64 (65.62%), Query Frame = 1
Query:  214 RKVWARSALAVRVPESLAGELGQALPYVAYRFRNGPFRSSWCPFGYDPRTDSSTAMYQSIDYRM 405
            R +W+R+AL V + +   G L Q L  VAY F NGP+R+ W  FGYDPR + S  +YQ +D+R+
Sbjct:  250 RPIWSRNALEVHMSQVSHGRLKQLLSLVAYYFLNGPWRTLWVKFGYDPRKNPSAKIYQMLDFRL 313          
BLAST of mRNA_M-pyrifera_M_contig117937.3707.1 vs. uniprot
Match: A0A443SEL8_9ACAR (General transcription factor 3C polypeptide 5-like protein n=1 Tax=Leptotrombidium deliense TaxID=299467 RepID=A0A443SEL8_9ACAR)

HSP 1 Score: 65.5 bits (158), Expect = 9.410e-10
Identity = 30/64 (46.88%), Postives = 43/64 (67.19%), Query Frame = 1
Query:  214 RKVWARSALAVRVPESLAGELGQALPYVAYRFRNGPFRSSWCPFGYDPRTDSSTAMYQSIDYRM 405
            R +W+R+AL  ++  S   +L   LP +AY F NGPFR  W  FGYDPR D S+ +YQ++D+R+
Sbjct:  253 RPIWSRNALMYKLKCSRP-DLKYILPCIAYYFANGPFRCMWIRFGYDPRNDKSSKVYQTLDFRV 315          
BLAST of mRNA_M-pyrifera_M_contig117937.3707.1 vs. uniprot
Match: UPI001EB04768 (general transcription factor 3C polypeptide 5-like n=1 Tax=Haliotis rufescens TaxID=6454 RepID=UPI001EB04768)

HSP 1 Score: 65.1 bits (157), Expect = 1.060e-9
Identity = 27/66 (40.91%), Postives = 40/66 (60.61%), Query Frame = 1
Query:  214 RKVWARSALAVRVPESLAGELGQALPYVAYRFRNGPFRSSWCPFGYDPRTDSSTAMYQSIDYRMTE 411
            R +W+++ +   +P      L   LP VAY F NGP+R+ W  FGYDPR D +  MYQ +D+R+ +
Sbjct:  262 RLIWSKNGIRCNMPAKYHPRLKYVLPLVAYYFCNGPWRTLWVKFGYDPRKDKNAKMYQILDFRLRQ 327          
BLAST of mRNA_M-pyrifera_M_contig117937.3707.1 vs. uniprot
Match: A0A7S0T2Q9_9CHLO (Hypothetical protein (Fragment) n=1 Tax=Mantoniella antarctica TaxID=81844 RepID=A0A7S0T2Q9_9CHLO)

HSP 1 Score: 62.4 bits (150), Expect = 1.160e-9
Identity = 30/58 (51.72%), Postives = 36/58 (62.07%), Query Frame = 1
Query:  214 RKVWARSALAVRVPESLAGELGQALPYVAYRFRNGPFRSSWCPFGYDPRTDSSTAMYQ 387
            R VWAR AL   +P  + G   + LP++AYRF NGPFR  W   G DPR+D S A YQ
Sbjct:   84 RPVWARLALLEALPAEVRGAAKRCLPFLAYRFGNGPFRRLWIKRGVDPRSDVSFAKYQ 141          
BLAST of mRNA_M-pyrifera_M_contig117937.3707.1 vs. uniprot
Match: A0A369S926_9METZ (General transcription factor 3C polypeptide 5 n=1 Tax=Trichoplax sp. H2 TaxID=287889 RepID=A0A369S926_9METZ)

HSP 1 Score: 64.7 bits (156), Expect = 1.740e-9
Identity = 30/64 (46.88%), Postives = 42/64 (65.62%), Query Frame = 1
Query:  214 RKVWARSALAVRVPESLAGELGQALPYVAYRFRNGPFRSSWCPFGYDPRTDSSTAMYQSIDYRM 405
            R +W+++AL V +      +L   LP VAY F++GP+RS W  FGYDPR D S+ +YQ  D+RM
Sbjct:  256 RPIWSKNALRVHIKNEW--KLKIVLPAVAYHFKSGPWRSLWVKFGYDPRRDPSSKVYQVFDFRM 317          
BLAST of mRNA_M-pyrifera_M_contig117937.3707.1 vs. uniprot
Match: UPI001EE57BC9 (general transcription factor 3C polypeptide 5-like n=1 Tax=Haliotis rubra TaxID=36100 RepID=UPI001EE57BC9)

HSP 1 Score: 64.3 bits (155), Expect = 2.390e-9
Identity = 27/66 (40.91%), Postives = 40/66 (60.61%), Query Frame = 1
Query:  214 RKVWARSALAVRVPESLAGELGQALPYVAYRFRNGPFRSSWCPFGYDPRTDSSTAMYQSIDYRMTE 411
            R +W+++ +   +P      L   LP VAY F NGP+R+ W  FGYDPR D +  MYQ +D+R+ +
Sbjct:  237 RPIWSKNGIRCNLPLKYHPRLKYVLPLVAYYFCNGPWRTLWVKFGYDPRKDRNAKMYQILDFRLRQ 302          
BLAST of mRNA_M-pyrifera_M_contig117937.3707.1 vs. uniprot
Match: T1HR27_RHOPR (Uncharacterized protein (Fragment) n=3 Tax=Triatominae TaxID=70999 RepID=T1HR27_RHOPR)

HSP 1 Score: 63.2 bits (152), Expect = 5.970e-9
Identity = 31/64 (48.44%), Postives = 41/64 (64.06%), Query Frame = 1
Query:  214 RKVWARSALAVRVPESLAGELGQALPYVAYRFRNGPFRSSWCPFGYDPRTDSSTAMYQSIDYRM 405
            R VW++ AL + V      +L   LP VAY F  GPFR+ W  FGYDPR D S+ +YQ++DYR+
Sbjct:  231 RPVWSKLAL-MAVTRMNHDQLKYLLPAVAYYFATGPFRAMWVRFGYDPRKDPSSRIYQTLDYRI 293          
BLAST of mRNA_M-pyrifera_M_contig117937.3707.1 vs. uniprot
Match: A0A6B2L250_9EUKA (Uncharacterized protein n=1 Tax=Arcella intermedia TaxID=1963864 RepID=A0A6B2L250_9EUKA)

HSP 1 Score: 63.2 bits (152), Expect = 6.050e-9
Identity = 26/64 (40.62%), Postives = 41/64 (64.06%), Query Frame = 1
Query:  214 RKVWARSALAVRVPESLAGELGQALPYVAYRFRNGPFRSSWCPFGYDPRTDSSTAMYQSIDYRM 405
            R  W+R AL + +P     +L   LP VAY F +GP+R+ W  +GYDPR ++ + ++Q ID+R+
Sbjct:  217 RPAWSRVALEMNIPTKYVKKLKATLPKVAYHFTDGPWRNCWVKYGYDPRKNAESRVFQVIDFRV 280          
BLAST of mRNA_M-pyrifera_M_contig117937.3707.1 vs. uniprot
Match: F2QUA6_KOMPC (RNA polymerase III transcription initiation factor complex subunit n=2 Tax=Komagataella phaffii TaxID=460519 RepID=F2QUA6_KOMPC)

HSP 1 Score: 62.8 bits (151), Expect = 8.530e-9
Identity = 44/130 (33.85%), Postives = 63/130 (48.46%), Query Frame = 1
Query:   25 QATPTGPKRRTMPTVAVVGTSAEDSRAQVRTVQVDAGEATGATKEC-MDWLLALFSATSGADAGRKVWARSALAVRVPESLAGELGQALPYVAYRFRNGPFRSSWCPFGYDPRTDSSTAMYQSIDYRMTE 411
            +ATP GP    +        + ED R +V+ +++D   +    +E     LL      + A   R +W RS L    P+     +  ALPYV+Y  R GP+RSS   FGYDPR D S+ +YQ   +R  E
Sbjct:  245 EATPLGPPNELL-------NNLEDLRKEVQQMRIDKRNSEEFIRESPAQTLLDTIELLNVAFRVRPIWLRSNLVKLFPDRFKSSIKFALPYVSYLMRKGPWRSSPIVFGYDPRLDPSSKVYQIETFRTVE 367          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig117937.3707.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A8J9RM56_9CHLO1.540e-1048.53General transcription factor 3C polypeptide 5 at N... [more]
A0A6P8HPX3_ACTTE2.020e-1046.88general transcription factor 3C polypeptide 5-like... [more]
A0A443SEL8_9ACAR9.410e-1046.88General transcription factor 3C polypeptide 5-like... [more]
UPI001EB047681.060e-940.91general transcription factor 3C polypeptide 5-like... [more]
A0A7S0T2Q9_9CHLO1.160e-951.72Hypothetical protein (Fragment) n=1 Tax=Mantoniell... [more]
A0A369S926_9METZ1.740e-946.88General transcription factor 3C polypeptide 5 n=1 ... [more]
UPI001EE57BC92.390e-940.91general transcription factor 3C polypeptide 5-like... [more]
T1HR27_RHOPR5.970e-948.44Uncharacterized protein (Fragment) n=3 Tax=Triatom... [more]
A0A6B2L250_9EUKA6.050e-940.63Uncharacterized protein n=1 Tax=Arcella intermedia... [more]
F2QUA6_KOMPC8.530e-933.85RNA polymerase III transcription initiation factor... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig117937contigM-pyrifera_M_contig117937:10..420 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeViridiplantae
Seed ortholog score63.9
Seed ortholog evalue6.6e-08
Seed eggNOG ortholog248742.XP_005645148.1
KEGG koko:K15202
Hectar predicted targeting categoryother localisation
EggNOG free text desc.RNA polymerase III transcription factor (TF)IIIC subunit
EggNOG OGs34IWC@3041,37IQE@33090,KOG2473@1,KOG2473@2759
COG Functional cat.K
Best tax levelChlorophyta
Best eggNOG OGNA|NA|NA
BRITEko00000,ko03021
Exons1
Model size411
Cds size411
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815697.6884623-CDS-M-pyrifera_M_contig117937:9..4201622815697.6884623-CDS-M-pyrifera_M_contig117937:9..420Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig117937 10..420 -
1692277527.0224624-CDS-M-pyrifera_M_contig117937:9..4201692277527.0224624-CDS-M-pyrifera_M_contig117937:9..420Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig117937 10..420 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig117937.3707.1prot_M-pyrifera_M_contig117937.3707.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig117937 10..420 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig117937.3707.1

>prot_M-pyrifera_M_contig117937.3707.1 ID=prot_M-pyrifera_M_contig117937.3707.1|Name=mRNA_M-pyrifera_M_contig117937.3707.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=137bp
MVQAVGVQQATPTGPKRRTMPTVAVVGTSAEDSRAQVRTVQVDAGEATGA
TKECMDWLLALFSATSGADAGRKVWARSALAVRVPESLAGELGQALPYVA
YRFRNGPFRSSWCPFGYDPRTDSSTAMYQSIDYRMTE
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mRNA from alignment at M-pyrifera_M_contig117937:10..420-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig117937.3707.1 ID=mRNA_M-pyrifera_M_contig117937.3707.1|Name=mRNA_M-pyrifera_M_contig117937.3707.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=411bp|location=Sequence derived from alignment at M-pyrifera_M_contig117937:10..420- (Macrocystis pyrifera P11B4 male)
ATGGTGCAGGCGGTGGGCGTCCAGCAGGCCACGCCCACCGGCCCCAAGCG GCGCACGATGCCCACGGTGGCCGTGGTCGGCACCAGTGCAGAGGACTCGC GAGCGCAGGTGCGGACGGTGCAGGTGGACGCGGGCGAGGCCACCGGCGCC ACGAAGGAGTGCATGGACTGGCTCCTGGCGCTGTTTTCTGCTACCTCTGG CGCAGACGCCGGCAGGAAGGTGTGGGCCCGCTCCGCACTCGCCGTTCGCG TGCCTGAGAGCCTTGCAGGCGAGCTGGGCCAGGCGCTGCCCTACGTCGCC TACCGCTTCAGGAACGGCCCTTTCCGCAGCTCTTGGTGTCCCTTTGGCTA CGACCCCAGGACAGACTCGAGCACCGCGATGTACCAGTCGATCGACTACC GCATGACGGAA
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig117937:10..420-

>mRNA_M-pyrifera_M_contig117937.3707.1 ID=mRNA_M-pyrifera_M_contig117937.3707.1|Name=mRNA_M-pyrifera_M_contig117937.3707.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=822bp|location=Sequence derived from alignment at M-pyrifera_M_contig117937:10..420- (Macrocystis pyrifera P11B4 male)
ATGGTGCAGGCGGTGGGCGTCCAGCAGGCCACGCCCACCGGCCCCAAGCG
GCGCACGATGCCCACGGTGGCCGTGGTCGGCACCAGTGCAGAGGACTCGC
GAGCGCAGGTGCGGACGGTGCAGGTGGACGCGGGCGAGGCCACCGGCGCC
ACGAAGGAGTGCATGGACTGGCTCCTGGCGCTGTTTTCTGCTACCTCTGG
CGCAGACGCCGGCAGGAAGGTGTGGGCCCGCTCCGCACTCGCCGTTCGCG
TGCCTGAGAGCCTTGCAGGCGAGCTGGGCCAGGCGCTGCCCTACGTCGCC
TACCGCTTCAGGAACGGCCCTTTCCGCAGCTCTTGGTGTCCCTTTGGCTA
CGACCCCAGGACAGACTCGAGCACCGCGATGTACCAGTCGATCGACTACC
GCATGACGGAAATGGTGCAGGCGGTGGGCGTCCAGCAGGCCACGCCCACC
GGCCCCAAGCGGCGCACGATGCCCACGGTGGCCGTGGTCGGCACCAGTGC
AGAGGACTCGCGAGCGCAGGTGCGGACGGTGCAGGTGGACGCGGGCGAGG
CCACCGGCGCCACGAAGGAGTGCATGGACTGGCTCCTGGCGCTGTTTTCT
GCTACCTCTGGCGCAGACGCCGGCAGGAAGGTGTGGGCCCGCTCCGCACT
CGCCGTTCGCGTGCCTGAGAGCCTTGCAGGCGAGCTGGGCCAGGCGCTGC
CCTACGTCGCCTACCGCTTCAGGAACGGCCCTTTCCGCAGCTCTTGGTGT
CCCTTTGGCTACGACCCCAGGACAGACTCGAGCACCGCGATGTACCAGTC
GATCGACTACCGCATGACGGAA
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