mRNA_M-pyrifera_M_contig11790.3704.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig11790.3704.1
Unique NamemRNA_M-pyrifera_M_contig11790.3704.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
[Close]
BLAST of mRNA_M-pyrifera_M_contig11790.3704.1 vs. uniprot
Match: D7FVD5_ECTSI (Small ubiquitin-like modifier n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FVD5_ECTSI)

HSP 1 Score: 124 bits (310), Expect = 4.160e-31
Identity = 64/68 (94.12%), Postives = 66/68 (97.06%), Query Frame = 1 
Query:    1 TGEETYFKVKKTTRMEKVFTTYATRKGVSVAALRFLLDGQRVAAEDTPTSLELEDQDQIDCMLEQQGG 204
            TGEETYFKVKKTTRMEKVFTTYA+RKGVSV+ALRFLLDG RV AEDTPTSLELEDQDQIDCMLEQQGG
Sbjct:   14 TGEETYFKVKKTTRMEKVFTTYASRKGVSVSALRFLLDGSRVGAEDTPTSLELEDQDQIDCMLEQQGG 81
[Close]
BLAST of mRNA_M-pyrifera_M_contig11790.3704.1 vs. uniprot
Match: A0A7S2UU84_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2UU84_9STRA)

HSP 1 Score: 107 bits (267), Expect = 1.220e-24
Identity = 56/68 (82.35%), Postives = 60/68 (88.24%), Query Frame = 1 
Query:    1 TGEETYFKVKKTTRMEKVFTTYATRKGVSVAALRFLLDGQRVAAEDTPTSLELEDQDQIDCMLEQQGG 204
            TGEET+FKVKKTTRMEKVFTTYA+RKGV V ALRFLLDG+RV    TP  L+LEDQDQIDCMLEQQGG
Sbjct:   33 TGEETFFKVKKTTRMEKVFTTYASRKGVQVNALRFLLDGERVNPAHTPKMLDLEDQDQIDCMLEQQGG 100
[Close]
BLAST of mRNA_M-pyrifera_M_contig11790.3704.1 vs. uniprot
Match: A0A835YTL0_9STRA (Ubiquitin-related domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YTL0_9STRA)

HSP 1 Score: 102 bits (255), Expect = 4.680e-23
Identity = 53/68 (77.94%), Postives = 57/68 (83.82%), Query Frame = 1 
Query:    1 TGEETYFKVKKTTRMEKVFTTYATRKGVSVAALRFLLDGQRVAAEDTPTSLELEDQDQIDCMLEQQGG 204
            TGEET+FKVKKTTRMEKVF+TYA RKGV  +ALRFLLDG RV    TP  L+LEDQD IDCMLEQQGG
Sbjct:   29 TGEETFFKVKKTTRMEKVFSTYAQRKGVQASALRFLLDGDRVDPNQTPGELDLEDQDMIDCMLEQQGG 96
[Close]
BLAST of mRNA_M-pyrifera_M_contig11790.3704.1 vs. uniprot
Match: A0A6U5EFS5_9STRA (Hypothetical protein n=1 Tax=Corethron hystrix TaxID=216773 RepID=A0A6U5EFS5_9STRA)

HSP 1 Score: 102 bits (255), Expect = 5.250e-23
Identity = 51/68 (75.00%), Postives = 57/68 (83.82%), Query Frame = 1 
Query:    1 TGEETYFKVKKTTRMEKVFTTYATRKGVSVAALRFLLDGQRVAAEDTPTSLELEDQDQIDCMLEQQGG 204
            TGEET+FK+KKTT+M KVF TYA RKGV V +LRFLLDG R+  EDTP  LEL+DQDQIDCMLEQ GG
Sbjct:   25 TGEETFFKIKKTTKMSKVFNTYAQRKGVQVNSLRFLLDGDRIQNEDTPAKLELDDQDQIDCMLEQMGG 92
[Close]
BLAST of mRNA_M-pyrifera_M_contig11790.3704.1 vs. uniprot
Match: A0A1Z5JHQ4_FISSO (Small ubiquitin-related modifier n=1 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5JHQ4_FISSO)

HSP 1 Score: 101 bits (252), Expect = 9.850e-23
Identity = 50/67 (74.63%), Postives = 58/67 (86.57%), Query Frame = 1 
Query:    4 GEETYFKVKKTTRMEKVFTTYATRKGVSVAALRFLLDGQRVAAEDTPTSLELEDQDQIDCMLEQQGG 204
            GEET+FK+KKTT+M+KVF TYATRKG+ +A+LRFLLDG+RV    TP  LELEDQDQIDCMLEQ GG
Sbjct:   21 GEETFFKIKKTTKMQKVFETYATRKGLQIASLRFLLDGERVEPTSTPKMLELEDQDQIDCMLEQAGG 87
[Close]
BLAST of mRNA_M-pyrifera_M_contig11790.3704.1 vs. uniprot
Match: B7G0R2_PHATC (Small ubiquitin-like modifier n=3 Tax=Phaeodactylum tricornutum TaxID=2850 RepID=B7G0R2_PHATC)

HSP 1 Score: 101 bits (251), Expect = 2.030e-22
Identity = 50/68 (73.53%), Postives = 58/68 (85.29%), Query Frame = 1 
Query:    1 TGEETYFKVKKTTRMEKVFTTYATRKGVSVAALRFLLDGQRVAAEDTPTSLELEDQDQIDCMLEQQGG 204
            TGEET+FK+KKTT+M+KVF TYATRKGV V +LRFLLDG R+  + TP  LELEDQDQIDC+LEQ GG
Sbjct:   25 TGEETFFKIKKTTKMQKVFETYATRKGVQVNSLRFLLDGDRITPDQTPKMLELEDQDQIDCVLEQTGG 92
[Close]
BLAST of mRNA_M-pyrifera_M_contig11790.3704.1 vs. uniprot
Match: A0A7S2G492_9STRA (Hypothetical protein n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2G492_9STRA)

HSP 1 Score: 101 bits (251), Expect = 2.950e-22
Identity = 49/68 (72.06%), Postives = 60/68 (88.24%), Query Frame = 1 
Query:    1 TGEETYFKVKKTTRMEKVFTTYATRKGVSVAALRFLLDGQRVAAEDTPTSLELEDQDQIDCMLEQQGG 204
            TGEET+FKVKK+TR EKVF+TYA RKGV+VA+LRFL+DG+R+    +P  L++EDQDQIDCMLEQQGG
Sbjct:   48 TGEETFFKVKKSTRFEKVFSTYAQRKGVNVASLRFLIDGERINPSQSPAELDMEDQDQIDCMLEQQGG 115
[Close]
BLAST of mRNA_M-pyrifera_M_contig11790.3704.1 vs. uniprot
Match: A0A448ZJ15_9STRA (Ubiquitin-like domain-containing protein n=1 Tax=Pseudo-nitzschia multistriata TaxID=183589 RepID=A0A448ZJ15_9STRA)

HSP 1 Score: 99.4 bits (246), Expect = 7.280e-22
Identity = 48/68 (70.59%), Postives = 58/68 (85.29%), Query Frame = 1 
Query:    1 TGEETYFKVKKTTRMEKVFTTYATRKGVSVAALRFLLDGQRVAAEDTPTSLELEDQDQIDCMLEQQGG 204
            TGEET+FK+KKTT+M KVF TYA RKGV +++LRFLLDG+R+  + TP  LEL+DQDQIDCMLEQ GG
Sbjct:   23 TGEETFFKIKKTTKMSKVFGTYANRKGVQLSSLRFLLDGERIEPDQTPKMLELDDQDQIDCMLEQSGG 90
[Close]
BLAST of mRNA_M-pyrifera_M_contig11790.3704.1 vs. uniprot
Match: A0A1E7FWC5_9STRA (Small ubiquitin-like protein n=1 Tax=Fragilariopsis cylindrus CCMP1102 TaxID=635003 RepID=A0A1E7FWC5_9STRA)

HSP 1 Score: 98.2 bits (243), Expect = 2.090e-21
Identity = 48/68 (70.59%), Postives = 58/68 (85.29%), Query Frame = 1 
Query:    1 TGEETYFKVKKTTRMEKVFTTYATRKGVSVAALRFLLDGQRVAAEDTPTSLELEDQDQIDCMLEQQGG 204
            TGEET+FK+KK+T+M KVF TYA RKGV +++LRFLLDG+R+A   TP  LEL+DQDQIDCMLEQ GG
Sbjct:   26 TGEETFFKIKKSTKMSKVFNTYAQRKGVQMSSLRFLLDGERIAETMTPQDLELDDQDQIDCMLEQSGG 93
[Close]
BLAST of mRNA_M-pyrifera_M_contig11790.3704.1 vs. uniprot
Match: A0A8J9S3P1_PHATR (Hypothetical protein n=2 Tax=Phaeodactylum tricornutum TaxID=2850 RepID=A0A8J9S3P1_PHATR)

HSP 1 Score: 96.7 bits (239), Expect = 3.680e-21
Identity = 48/65 (73.85%), Postives = 55/65 (84.62%), Query Frame = 1 
Query:   10 ETYFKVKKTTRMEKVFTTYATRKGVSVAALRFLLDGQRVAAEDTPTSLELEDQDQIDCMLEQQGG 204
            ET+FK+KKTT+M KVF TYATRKGV  ++LRFLLDG+ +A E TP  LELEDQDQIDCMLEQ GG
Sbjct:    1 ETFFKIKKTTKMSKVFDTYATRKGVQASSLRFLLDGETIAPESTPKMLELEDQDQIDCMLEQTGG 65
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig11790.3704.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FVD5_ECTSI4.160e-3194.12Small ubiquitin-like modifier n=2 Tax=Ectocarpus T... [more]
A0A7S2UU84_9STRA1.220e-2482.35Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]
A0A835YTL0_9STRA4.680e-2377.94Ubiquitin-related domain-containing protein n=1 Ta... [more]
A0A6U5EFS5_9STRA5.250e-2375.00Hypothetical protein n=1 Tax=Corethron hystrix Tax... [more]
A0A1Z5JHQ4_FISSO9.850e-2374.63Small ubiquitin-related modifier n=1 Tax=Fistulife... [more]
B7G0R2_PHATC2.030e-2273.53Small ubiquitin-like modifier n=3 Tax=Phaeodactylu... [more]
A0A7S2G492_9STRA2.950e-2272.06Hypothetical protein n=1 Tax=Florenciella parvula ... [more]
A0A448ZJ15_9STRA7.280e-2270.59Ubiquitin-like domain-containing protein n=1 Tax=P... [more]
A0A1E7FWC5_9STRA2.090e-2170.59Small ubiquitin-like protein n=1 Tax=Fragilariopsi... [more]
A0A8J9S3P1_PHATR3.680e-2173.85Hypothetical protein n=2 Tax=Phaeodactylum tricorn... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig11790contigM-pyrifera_M_contig11790:1969..3302 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score101.7
Seed ortholog evalue1.1e-19
Seed eggNOG ortholog2880.D7FVD5
KEGG koko:K12160
KEGG Pathwayko03013,ko05418,map03013,map05418
KEGG ModuleM00427
Hectar predicted targeting categoryno signal peptide or anchor
GOsGO:0001221,GO:0001222,GO:0003674,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0006464,GO:0006807,GO:0008134,GO:0008150,GO:0008152,GO:0009893,GO:0009894,GO:0009896,GO:0009987,GO:0010604,GO:0016604,GO:0016605,GO:0016925,GO:0018193,GO:0018205,GO:0019222,GO:0019538,GO:0019899,GO:0030162,GO:0031323,GO:0031325,GO:0031329,GO:0031331,GO:0031386,GO:0031625,GO:0031974,GO:0031981,GO:0032268,GO:0032270,GO:0032434,GO:0032436,GO:0032446,GO:0036211,GO:0042176,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0043412,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0044389,GO:0044422,GO:0044424,GO:0044428,GO:0044446,GO:0044451,GO:0044464,GO:0045732,GO:0045862,GO:0048518,GO:0048522,GO:0050789,GO:0050794,GO:0051171,GO:0051173,GO:0051246,GO:0051247,GO:0060255,GO:0061136,GO:0065007,GO:0070013,GO:0070647,GO:0071704,GO:0080090,GO:1901564,GO:1901800,GO:1903050,GO:1903052,GO:1903362,GO:1903364,GO:2000058,GO:2000060
EggNOG free text desc.Small ubiquitinrelated modifier
EggNOG OGsCOG5227@1,KOG1769@2759
COG Functional cat.O
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko03019,ko03029,ko04121,ko04812
Exons1
Model size1334
Cds size165
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig11790.3704.1prot_M-pyrifera_M_contig11790.3704.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig11790 2011..2175 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815697.4695628-UTR-M-pyrifera_M_contig11790:1968..20101622815697.4695628-UTR-M-pyrifera_M_contig11790:1968..2010Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig11790 1969..2010 +
1692277526.9072428-UTR-M-pyrifera_M_contig11790:1968..20101692277526.9072428-UTR-M-pyrifera_M_contig11790:1968..2010Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig11790 1969..2010 +
1622815697.4978707-UTR-M-pyrifera_M_contig11790:2175..33021622815697.4978707-UTR-M-pyrifera_M_contig11790:2175..3302Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig11790 2176..3302 +
1692277526.9310129-UTR-M-pyrifera_M_contig11790:2175..33021692277526.9310129-UTR-M-pyrifera_M_contig11790:2175..3302Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig11790 2176..3302 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815697.4824643-CDS-M-pyrifera_M_contig11790:2010..21751622815697.4824643-CDS-M-pyrifera_M_contig11790:2010..2175Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig11790 2011..2175 +
1692277526.9217515-CDS-M-pyrifera_M_contig11790:2010..21751692277526.9217515-CDS-M-pyrifera_M_contig11790:2010..2175Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig11790 2011..2175 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig11790.3704.1

>prot_M-pyrifera_M_contig11790.3704.1 ID=prot_M-pyrifera_M_contig11790.3704.1|Name=mRNA_M-pyrifera_M_contig11790.3704.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=55bp
MEKVFTTYATRKGVSVAALRFLLDGQRVAAEDTPTSLELEDQDQIDCMLE
QQGG*
back to top

mRNA from alignment at M-pyrifera_M_contig11790:1969..3302+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig11790.3704.1 ID=mRNA_M-pyrifera_M_contig11790.3704.1|Name=mRNA_M-pyrifera_M_contig11790.3704.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=1334bp|location=Sequence derived from alignment at M-pyrifera_M_contig11790:1969..3302+ (Macrocystis pyrifera P11B4 male)
ACTGGAGAGGAGACTTACTTCAAGGTGAAAAAGACGACGCGAATGGAGAA
AGTGTTTACGACCTACGCAACAAGGAAGGGTGTGAGCGTGGCTGCCTTGC
GGTTCCTTCTGGATGGTCAACGTGTGGCCGCGGAGGACACCCCTACATCA
TTGGAGCTTGAAGACCAAGACCAGATTGACTGCATGTTGGAGCAGCAGGG
CGGTTGAGTCGAGCAGCGAGGTTGCTCTCGTGTAATTCAAAAATAGCATG
ATGGTTGGATGGTTCGCCGCGACCAGTAAAGAAATTGCAAACCGGTACGG
TACCTGTGTTGGATTTTGGGACACCAGTATAGGACAAGTTGTTATTTCAC
TTCGGACTTTTTTTTCCATTTGTAGTTGTCGAGGACTTCAGTTGAGCATC
TACCCACTGTCTCTGATGTGGAGGCCAGTCCTTTACGAGCAGAGTGCATA
TCATTCGCTTCTTCTGAGCCGTGATCCAATAGACAGTACTGGGCTGCTGA
AGGTGTAACACCAAGGACCAGTGTGTCCTTTTGGCACAGGCAGTGTTTCA
ATTTTCCCAGGCAGGTGTAGCGCTTCCCTGGGATTCGCTGTTAATTTAGT
GGCCATTAACGTGTGATTGAGGCACGGCTATTGGCCTCGCGCGGTTGACT
ATGATGGTTGGGCGGGCAGCTGCGCTCTGTGGGCAAAGTGCTGCAGGTGT
GTCCCTATGATGGCTCTTCGATGGATCCTCGTACGGTAGGTGACACTACA
TGCGCAAATGCCGCGTTTTTTATAAATGGTGCGCACTACGAAGATCGCGG
GTAGTTCGCTTCTGCGTATATATCAGGTAGACCACCGGCGAACAACACTA
GCTACCGATGTATGTAATTTGTAGCAGCATCGGCGATATCATCGACAAGG
ATGGAGGGGCAAGACGCGACGGTTCCGCTTCAATTGGCCTTGTTTTTCGA
GATCGTGTCCTACACCGTTAACGTTGACTAGGCAGAGAAGGAGAAGGAGA
CAGCTCGGGCGTGCCTCGTCTCGATAGTGTGGGTGGGGGGTCCGAATAGC
CAAGGGTAAACAACCAAGATAGGATGCGCCTGTGTGAGTGACACAGAGGA
CGGTATACCGCATACGTTCTATTGAGTGGGTGCATACGGGTCCATTGTGT
GGTTGTGTTTACTTTGTTCCTCCTTGTTGAAGACGGCCGTCAATTGGAGT
TGTAGTCAGTTGTAGTTTCAGGCCTGTTAAGGCGAAGAGAAAGCAGCAAA
TGAGCTATATTATGAACATGACATGATAACTTGGAAGCTGGACTATGTCG
TAAATGAAAATGCAATCTGATGCGACCAAAAGCT
back to top

Coding sequence (CDS) from alignment at M-pyrifera_M_contig11790:1969..3302+

>mRNA_M-pyrifera_M_contig11790.3704.1 ID=mRNA_M-pyrifera_M_contig11790.3704.1|Name=mRNA_M-pyrifera_M_contig11790.3704.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=330bp|location=Sequence derived from alignment at M-pyrifera_M_contig11790:1969..3302+ (Macrocystis pyrifera P11B4 male)
ATGGAGAAAGTGTTTACGACCTACGCAACAAGGAAGGGTGTGAGCGTGGC
TGCCTTGCGGTTCCTTCTGGATGGTCAACGTGTGGCCGCGGAGGACACCC
CTACATCATTGGAGCTTGAAGACCAAGACCAGATTGACTGCATGTTGGAG
CAGCAGGGCGGTTGAATGGAGAAAGTGTTTACGACCTACGCAACAAGGAA
GGGTGTGAGCGTGGCTGCCTTGCGGTTCCTTCTGGATGGTCAACGTGTGG
CCGCGGAGGACACCCCTACATCATTGGAGCTTGAAGACCAAGACCAGATT
GACTGCATGTTGGAGCAGCAGGGCGGTTGA
back to top