mRNA_M-pyrifera_M_contig117861.3696.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig117861.3696.1
Unique NamemRNA_M-pyrifera_M_contig117861.3696.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig117861.3696.1 vs. uniprot
Match: A0A812ZPK7_SYMMI (YbjT protein n=11 Tax=cellular organisms TaxID=131567 RepID=A0A812ZPK7_SYMMI)

HSP 1 Score: 145 bits (366), Expect = 7.830e-40
Identity = 68/70 (97.14%), Postives = 69/70 (98.57%), Query Frame = 1
Query:    1 LRLAAEMKLPGRAWLEFEVKEDAQGSTISQTAIFDPVGLWGRLYWYAVCPLHYFVFAGMLKNIARAAEGI 210
            LRLAAEMKLPGRAWLEFEVKEDAQGSTISQTA+FDPVGLWGRLYWYAVCPLHYFVFAGMLKNIARA EGI
Sbjct:  417 LRLAAEMKLPGRAWLEFEVKEDAQGSTISQTAMFDPVGLWGRLYWYAVCPLHYFVFAGMLKNIARATEGI 486          
BLAST of mRNA_M-pyrifera_M_contig117861.3696.1 vs. uniprot
Match: A0A3C0AR86_9PLAN (Uncharacterized protein (Fragment) n=1 Tax=Planctomycetaceae bacterium TaxID=2026779 RepID=A0A3C0AR86_9PLAN)

HSP 1 Score: 120 bits (300), Expect = 6.440e-34
Identity = 56/70 (80.00%), Postives = 61/70 (87.14%), Query Frame = 1
Query:    1 LRLAAEMKLPGRAWLEFEVKEDAQGSTISQTAIFDPVGLWGRLYWYAVCPLHYFVFAGMLKNIARAAEGI 210
            LRL AEMKLPGRAWLEFEV    + STI+QTAIFDPVGLWGRLYWYAVCPLH+FVF+GM+ NIA AAE I
Sbjct:   13 LRLLAEMKLPGRAWLEFEVTGTGETSTITQTAIFDPVGLWGRLYWYAVCPLHHFVFSGMIHNIAAAAERI 82          
BLAST of mRNA_M-pyrifera_M_contig117861.3696.1 vs. uniprot
Match: A0A517XA46_9PLAN (3 beta-hydroxysteroid dehydrogenase/Delta 5-->4-isomerase n=9 Tax=Planctomycetaceae TaxID=126 RepID=A0A517XA46_9PLAN)

HSP 1 Score: 120 bits (302), Expect = 1.190e-30
Identity = 56/70 (80.00%), Postives = 61/70 (87.14%), Query Frame = 1
Query:    1 LRLAAEMKLPGRAWLEFEVKEDAQGSTISQTAIFDPVGLWGRLYWYAVCPLHYFVFAGMLKNIARAAEGI 210
            LRL AEMKLPGRAWLEFEV    + STI+QTAIFDPVGLWGRLYWYAVCPLH+FVF+GM+ NIA AAE I
Sbjct:  419 LRLLAEMKLPGRAWLEFEVTGTGETSTITQTAIFDPVGLWGRLYWYAVCPLHHFVFSGMIHNIAAAAEAI 488          
BLAST of mRNA_M-pyrifera_M_contig117861.3696.1 vs. uniprot
Match: A0A518IB16_9PLAN (3 beta-hydroxysteroid dehydrogenase/Delta 5-->4-isomerase n=2 Tax=Gimesia TaxID=1649453 RepID=A0A518IB16_9PLAN)

HSP 1 Score: 120 bits (301), Expect = 1.670e-30
Identity = 54/68 (79.41%), Postives = 62/68 (91.18%), Query Frame = 1
Query:    1 LRLAAEMKLPGRAWLEFEVKEDAQGSTISQTAIFDPVGLWGRLYWYAVCPLHYFVFAGMLKNIARAAE 204
            LRL+AEMKLPGRAWLEFEV  D   STI+QTAIFDP+GLWGR+YWYAVCPLH+FVF+GMLKNIA A++
Sbjct:  421 LRLSAEMKLPGRAWLEFEVTGDEVSSTITQTAIFDPIGLWGRIYWYAVCPLHHFVFSGMLKNIAVASQ 488          
BLAST of mRNA_M-pyrifera_M_contig117861.3696.1 vs. uniprot
Match: A0A517VYX7_9PLAN (3 beta-hydroxysteroid dehydrogenase/Delta 5-->4-isomerase n=2 Tax=Gimesia aquarii TaxID=2527964 RepID=A0A517VYX7_9PLAN)

HSP 1 Score: 114 bits (286), Expect = 2.190e-28
Identity = 52/67 (77.61%), Postives = 61/67 (91.04%), Query Frame = 1
Query:    1 LRLAAEMKLPGRAWLEFEVKEDAQGSTISQTAIFDPVGLWGRLYWYAVCPLHYFVFAGMLKNIARAA 201
            LRL AEMKLPGRAWLEF+V  + Q STI+QTAI+DP+GL GRLYWYAVCPLH+FVF+GML+NIA+AA
Sbjct:  420 LRLVAEMKLPGRAWLEFQVTGNDQSSTITQTAIYDPIGLLGRLYWYAVCPLHHFVFSGMLRNIAKAA 486          
BLAST of mRNA_M-pyrifera_M_contig117861.3696.1 vs. uniprot
Match: A0A1F2V6U1_9BACT (Uncharacterized protein n=1 Tax=Acidobacteria bacterium RIFCSPLOWO2_12_FULL_60_22 TaxID=1797188 RepID=A0A1F2V6U1_9BACT)

HSP 1 Score: 103 bits (257), Expect = 1.470e-27
Identity = 47/68 (69.12%), Postives = 55/68 (80.88%), Query Frame = 1
Query:    1 LRLAAEMKLPGRAWLEFEVKEDAQGSTISQTAIFDPVGLWGRLYWYAVCPLHYFVFAGMLKNIARAAE 204
            LRL AEM LPGRAWL+FE++ D  GSTI QTAIFDP+G+ G LYWY+V PLH F+FAGML  I +AAE
Sbjct:    7 LRLFAEMNLPGRAWLQFEIEPDGSGSTIRQTAIFDPLGIRGLLYWYSVYPLHQFIFAGMLSGITKAAE 74          
BLAST of mRNA_M-pyrifera_M_contig117861.3696.1 vs. uniprot
Match: A0A3L7V2J0_9BACT (SDR family oxidoreductase n=1 Tax=Planctomycetes bacterium TaxID=2026780 RepID=A0A3L7V2J0_9BACT)

HSP 1 Score: 110 bits (275), Expect = 7.870e-27
Identity = 53/68 (77.94%), Postives = 57/68 (83.82%), Query Frame = 1
Query:    1 LRLAAEMKLPGRAWLEFEVKEDAQGSTISQTAIFDPVGLWGRLYWYAVCPLHYFVFAGMLKNIARAAE 204
            LRL AEMKLPGRAWLEFEV    QGSTI QTAIFDP+GL G LYWY + PLH FVFAGML+N+ARAAE
Sbjct:  409 LRLKAEMKLPGRAWLEFEVNPCEQGSTIRQTAIFDPLGLAGLLYWYGIYPLHQFVFAGMLRNLARAAE 476          
BLAST of mRNA_M-pyrifera_M_contig117861.3696.1 vs. uniprot
Match: A0A7C3DJP7_9BACT (SDR family oxidoreductase n=1 Tax=Verrucomicrobia subdivision 3 bacterium TaxID=2052186 RepID=A0A7C3DJP7_9BACT)

HSP 1 Score: 109 bits (273), Expect = 1.320e-26
Identity = 49/69 (71.01%), Postives = 58/69 (84.06%), Query Frame = 1
Query:    1 LRLAAEMKLPGRAWLEFEVKEDAQGSTISQTAIFDPVGLWGRLYWYAVCPLHYFVFAGMLKNIARAAEG 207
            LRL AEMKLPGRAWL+FEV++D + + ++QTAIFDPVGLWG  YWY V PLH  VFAGML+ +ARAAEG
Sbjct:  413 LRLQAEMKLPGRAWLDFEVEQDGEHARLNQTAIFDPVGLWGLAYWYGVWPLHQLVFAGMLRGLARAAEG 481          
BLAST of mRNA_M-pyrifera_M_contig117861.3696.1 vs. uniprot
Match: UPI00198BF070 (SDR family oxidoreductase n=1 Tax=Burkholderiales bacterium TaxID=1891238 RepID=UPI00198BF070)

HSP 1 Score: 106 bits (264), Expect = 1.660e-26
Identity = 48/68 (70.59%), Postives = 54/68 (79.41%), Query Frame = 1
Query:    1 LRLAAEMKLPGRAWLEFEVKEDAQGSTISQTAIFDPVGLWGRLYWYAVCPLHYFVFAGMLKNIARAAE 204
            LRL AEMKLPGRAWLEFEV+ D  G+ + QTA FDP+GLWG  YWY V PLH  VFAGML+ +ARAAE
Sbjct:  201 LRLTAEMKLPGRAWLEFEVQPDGNGARLRQTATFDPLGLWGLAYWYGVWPLHQLVFAGMLRGLARAAE 268          
BLAST of mRNA_M-pyrifera_M_contig117861.3696.1 vs. uniprot
Match: A0A3N5RIN8_9PLAN (SDR family oxidoreductase (Fragment) n=1 Tax=Planctomycetaceae bacterium TaxID=2026779 RepID=A0A3N5RIN8_9PLAN)

HSP 1 Score: 107 bits (268), Expect = 2.590e-26
Identity = 50/68 (73.53%), Postives = 56/68 (82.35%), Query Frame = 1
Query:    1 LRLAAEMKLPGRAWLEFEVKEDAQGSTISQTAIFDPVGLWGRLYWYAVCPLHYFVFAGMLKNIARAAE 204
            LRL AEMKLPGRAWLEFEV     GSTI QTAIFDP+GLWG +YWY + PLH FVFAGML+N+A+AA 
Sbjct:  286 LRLHAEMKLPGRAWLEFEVTPCDLGSTIRQTAIFDPLGLWGLMYWYGIYPLHQFVFAGMLRNLAQAAS 353          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig117861.3696.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A812ZPK7_SYMMI7.830e-4097.14YbjT protein n=11 Tax=cellular organisms TaxID=131... [more]
A0A3C0AR86_9PLAN6.440e-3480.00Uncharacterized protein (Fragment) n=1 Tax=Plancto... [more]
A0A517XA46_9PLAN1.190e-3080.003 beta-hydroxysteroid dehydrogenase/Delta 5-->4-is... [more]
A0A518IB16_9PLAN1.670e-3079.413 beta-hydroxysteroid dehydrogenase/Delta 5-->4-is... [more]
A0A517VYX7_9PLAN2.190e-2877.613 beta-hydroxysteroid dehydrogenase/Delta 5-->4-is... [more]
A0A1F2V6U1_9BACT1.470e-2769.12Uncharacterized protein n=1 Tax=Acidobacteria bact... [more]
A0A3L7V2J0_9BACT7.870e-2777.94SDR family oxidoreductase n=1 Tax=Planctomycetes b... [more]
A0A7C3DJP7_9BACT1.320e-2671.01SDR family oxidoreductase n=1 Tax=Verrucomicrobia ... [more]
UPI00198BF0701.660e-2670.59SDR family oxidoreductase n=1 Tax=Burkholderiales ... [more]
A0A3N5RIN8_9PLAN2.590e-2673.53SDR family oxidoreductase (Fragment) n=1 Tax=Planc... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig117861contigM-pyrifera_M_contig117861:153..362 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeBacteria
Seed ortholog score112.5
Seed ortholog evalue7.5e-23
Seed eggNOG ortholog344747.PM8797T_00899
Preferred nameybjT
Hectar predicted targeting categoryother localisation
GOsGO:0005575,GO:0005623,GO:0005886,GO:0016020,GO:0044464,GO:0071944
EggNOG free text desc.PFAM NAD-dependent epimerase dehydratase
EggNOG OGs2IYQV@203682,COG0702@1,COG0702@2
COG Functional cat.GM
Best tax levelPlanctomycetes
Best eggNOG OGNA|NA|NA
Exons1
Model size210
Cds size192
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815696.601334-UTR-M-pyrifera_M_contig117861:152..1701622815696.601334-UTR-M-pyrifera_M_contig117861:152..170Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig117861 153..170 +
1692277526.355311-UTR-M-pyrifera_M_contig117861:152..1701692277526.355311-UTR-M-pyrifera_M_contig117861:152..170Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig117861 153..170 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815696.6148932-CDS-M-pyrifera_M_contig117861:170..3621622815696.6148932-CDS-M-pyrifera_M_contig117861:170..362Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig117861 171..362 +
1692277526.3650055-CDS-M-pyrifera_M_contig117861:170..3621692277526.3650055-CDS-M-pyrifera_M_contig117861:170..362Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig117861 171..362 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig117861.3696.1prot_M-pyrifera_M_contig117861.3696.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig117861 171..362 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig117861.3696.1

>prot_M-pyrifera_M_contig117861.3696.1 ID=prot_M-pyrifera_M_contig117861.3696.1|Name=mRNA_M-pyrifera_M_contig117861.3696.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=64bp
MKLPGRAWLEFEVKEDAQGSTISQTAIFDPVGLWGRLYWYAVCPLHYFVF
AGMLKNIARAAEGI
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mRNA from alignment at M-pyrifera_M_contig117861:153..362+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig117861.3696.1 ID=mRNA_M-pyrifera_M_contig117861.3696.1|Name=mRNA_M-pyrifera_M_contig117861.3696.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=210bp|location=Sequence derived from alignment at M-pyrifera_M_contig117861:153..362+ (Macrocystis pyrifera P11B4 male)
CTGCGACTGGCGGCCGAGATGAAGCTGCCGGGTCGCGCCTGGCTGGAGTT CGAAGTTAAAGAGGATGCGCAGGGTTCGACGATCTCGCAGACGGCGATAT TTGATCCGGTGGGACTGTGGGGGCGGCTGTACTGGTATGCGGTCTGTCCG CTGCATTATTTCGTGTTTGCGGGGATGCTGAAGAATATCGCCCGGGCGGC GGAAGGGATC
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig117861:153..362+

>mRNA_M-pyrifera_M_contig117861.3696.1 ID=mRNA_M-pyrifera_M_contig117861.3696.1|Name=mRNA_M-pyrifera_M_contig117861.3696.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=384bp|location=Sequence derived from alignment at M-pyrifera_M_contig117861:153..362+ (Macrocystis pyrifera P11B4 male)
ATGAAGCTGCCGGGTCGCGCCTGGCTGGAGTTCGAAGTTAAAGAGGATGC
GCAGGGTTCGACGATCTCGCAGACGGCGATATTTGATCCGGTGGGACTGT
GGGGGCGGCTGTACTGGTATGCGGTCTGTCCGCTGCATTATTTCGTGTTT
GCGGGGATGCTGAAGAATATCGCCCGGGCGGCGGAAGGGATCATGAAGCT
GCCGGGTCGCGCCTGGCTGGAGTTCGAAGTTAAAGAGGATGCGCAGGGTT
CGACGATCTCGCAGACGGCGATATTTGATCCGGTGGGACTGTGGGGGCGG
CTGTACTGGTATGCGGTCTGTCCGCTGCATTATTTCGTGTTTGCGGGGAT
GCTGAAGAATATCGCCCGGGCGGCGGAAGGGATC
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