mRNA_M-pyrifera_M_contig11785.3694.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig11785.3694.1
Unique NamemRNA_M-pyrifera_M_contig11785.3694.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig11785.3694.1 vs. uniprot
Match: A0A836CI02_9STRA (Ribose-5-phosphate isomerase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CI02_9STRA)

HSP 1 Score: 93.6 bits (231), Expect = 4.720e-21
Identity = 53/97 (54.64%), Postives = 61/97 (62.89%), Query Frame = 1 
Query:    1 RVGQLLASGDLTDIRAVPTSERTAEQARSLGIPLTTLDAERGAPLDVAIDGADTANLETFGLVKGGXXXXXXXXXXXXXXXXFVVIVDGSKLADGLG 291
            R+GQLL  G L DI A+PTS RT EQA  LGIPLTTLD+     +DVAIDGADT +  T  LVKGG                F+VIVD SK+ADG+G
Sbjct:   81 RLGQLLKDGTLKDIIAIPTSIRTKEQAEGLGIPLTTLDSHPN--IDVAIDGADTVDNATLALVKGGGGALLREKIVEVQAKEFIVIVDESKMADGVG 175
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BLAST of mRNA_M-pyrifera_M_contig11785.3694.1 vs. uniprot
Match: A0A7S0JD86_9EUKA (Ribose-5-phosphate isomerase n=1 Tax=Calcidiscus leptoporus TaxID=127549 RepID=A0A7S0JD86_9EUKA)

HSP 1 Score: 92.4 bits (228), Expect = 1.580e-20
Identity = 56/97 (57.73%), Postives = 62/97 (63.92%), Query Frame = 1 
Query:    1 RVGQLLASGDLTDIRAVPTSERTAEQARSLGIPLTTLDAERGAPLDVAIDGADTANLETFGLVKGGXXXXXXXXXXXXXXXXFVVIVDGSKLADGLG 291
            RVGQ LASG+L+DI AVPTS RT EQA SLGIPL TLD    + LDVAIDGAD  + +   LVKGG                F+VIVD SKL DGLG
Sbjct:   85 RVGQKLASGELSDILAVPTSVRTKEQAESLGIPLVTLDTH--SDLDVAIDGADEVDPD-LNLVKGGGGALLREKMVEVCAKKFIVIVDESKLCDGLG 178
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BLAST of mRNA_M-pyrifera_M_contig11785.3694.1 vs. uniprot
Match: A0A7S2JKY9_9EUKA (Ribose-5-phosphate isomerase (Fragment) n=2 Tax=Haptolina brevifila TaxID=156173 RepID=A0A7S2JKY9_9EUKA)

HSP 1 Score: 91.3 bits (225), Expect = 4.730e-20
Identity = 56/99 (56.57%), Postives = 62/99 (62.63%), Query Frame = 1 
Query:    1 RVGQLLASGDLTDIRAVPTSERTAEQARSLGIPLTTLDA--ERGAPLDVAIDGADTANLETFGLVKGGXXXXXXXXXXXXXXXXFVVIVDGSKLADGLG 291
            RVG+LL SG LTDI A+PTS RT EQA +LGIPLTTL     R + LDVAIDGAD  + E   LVKGG                F+VIVD SKL DGLG
Sbjct:   84 RVGELLKSGKLTDIVAIPTSVRTKEQAEALGIPLTTLGTPESRYSDLDVAIDGADEVDPE-LNLVKGGGGALLREKMVEVCAKKFIVIVDESKLCDGLG 181
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BLAST of mRNA_M-pyrifera_M_contig11785.3694.1 vs. uniprot
Match: A0A7S1AKJ2_NOCSC (Ribose-5-phosphate isomerase n=1 Tax=Noctiluca scintillans TaxID=2966 RepID=A0A7S1AKJ2_NOCSC)

HSP 1 Score: 90.1 bits (222), Expect = 5.480e-20
Identity = 55/97 (56.70%), Postives = 61/97 (62.89%), Query Frame = 1 
Query:    1 RVGQLLASGDLTDIRAVPTSERTAEQARSLGIPLTTLDAERGAPLDVAIDGADTANLETFGLVKGGXXXXXXXXXXXXXXXXFVVIVDGSKLADGLG 291
            RVGQ L SG+L DI AVPTS RT EQA SLGIPLTTLD+   + LDVAIDGAD  +     LVKGG                F+VIVD SKL +GLG
Sbjct:   40 RVGQKLKSGELVDILAVPTSIRTKEQAESLGIPLTTLDSH--SDLDVAIDGADGVD-PALNLVKGGGGAHFREKIVELSAKKFIVIVDESKLVEGLG 133
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BLAST of mRNA_M-pyrifera_M_contig11785.3694.1 vs. uniprot
Match: K0SNV8_THAOC (Ribose-5-phosphate isomerase n=1 Tax=Thalassiosira oceanica TaxID=159749 RepID=K0SNV8_THAOC)

HSP 1 Score: 90.5 bits (223), Expect = 6.700e-20
Identity = 54/97 (55.67%), Postives = 61/97 (62.89%), Query Frame = 1 
Query:    1 RVGQLLASGDLTDIRAVPTSERTAEQARSLGIPLTTLDAERGAPLDVAIDGADTANLETFGLVKGGXXXXXXXXXXXXXXXXFVVIVDGSKLADGLG 291
            R+G+ L SG+LTDI A+PTS RT EQA SLGIPL TLD    + LDVAIDGAD  +   F LVKGG                F+VIVD SKL DGLG
Sbjct:   40 RLGEKLKSGELTDIVAIPTSIRTKEQAESLGIPLVTLDTH--SKLDVAIDGADNVD-PGFNLVKGGGGALLREKMVELAADTFIVIVDESKLCDGLG 133
[Close]
BLAST of mRNA_M-pyrifera_M_contig11785.3694.1 vs. uniprot
Match: A0A7S3ATH6_9EUKA (Ribose-5-phosphate isomerase n=1 Tax=Haptolina ericina TaxID=156174 RepID=A0A7S3ATH6_9EUKA)

HSP 1 Score: 88.6 bits (218), Expect = 1.380e-19
Identity = 54/97 (55.67%), Postives = 60/97 (61.86%), Query Frame = 1 
Query:    1 RVGQLLASGDLTDIRAVPTSERTAEQARSLGIPLTTLDAERGAPLDVAIDGADTANLETFGLVKGGXXXXXXXXXXXXXXXXFVVIVDGSKLADGLG 291
            RVGQLL  G L DI A+PTS RT EQA  LGIPL+TLD    + LDVAIDGAD  + + F LVKGG                F+VIVD SKL DGLG
Sbjct:   16 RVGQLLKEGTLKDIIAIPTSVRTKEQAEELGIPLSTLDEY--SDLDVAIDGADEVDPD-FNLVKGGGGALLREKMVEVCAKKFIVIVDESKLCDGLG 109
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BLAST of mRNA_M-pyrifera_M_contig11785.3694.1 vs. uniprot
Match: A0A7S0CHS3_9STRA (Ribose-5-phosphate isomerase n=1 Tax=Proboscia inermis TaxID=420281 RepID=A0A7S0CHS3_9STRA)

HSP 1 Score: 89.0 bits (219), Expect = 2.670e-19
Identity = 53/97 (54.64%), Postives = 62/97 (63.92%), Query Frame = 1 
Query:    1 RVGQLLASGDLTDIRAVPTSERTAEQARSLGIPLTTLDAERGAPLDVAIDGADTANLETFGLVKGGXXXXXXXXXXXXXXXXFVVIVDGSKLADGLG 291
            R+GQLL+SG+L DI A+PTS RT EQA SLGIPL TLD    + LDVAIDGAD  + +   LVKGG                F+VIVD SKL +GLG
Sbjct:   74 RLGQLLSSGELKDIVAIPTSIRTKEQAESLGIPLVTLDTH--SKLDVAIDGADEVDPD-LNLVKGGGGALLREKMVEVCADKFIVIVDESKLCEGLG 167
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BLAST of mRNA_M-pyrifera_M_contig11785.3694.1 vs. uniprot
Match: A0A835YQR3_9STRA (Ribose-5-phosphate isomerase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YQR3_9STRA)

HSP 1 Score: 89.0 bits (219), Expect = 3.530e-19
Identity = 54/97 (55.67%), Postives = 58/97 (59.79%), Query Frame = 1 
Query:    1 RVGQLLASGDLTDIRAVPTSERTAEQARSLGIPLTTLDAERGAPLDVAIDGADTANLETFGLVKGGXXXXXXXXXXXXXXXXFVVIVDGSKLADGLG 291
            RVGQLLA+G L DI AVPTSERT   A  L IPL TLD      LDVAIDGADT +  T  LVKGG                 VVIVD SKL++GLG
Sbjct:   91 RVGQLLANGKLKDIVAVPTSERTRAHAAQLSIPLATLDEHPA--LDVAIDGADTVDRGTLALVKGGGGALLREKIVEVAAKKLVVIVDESKLSEGLG 185
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BLAST of mRNA_M-pyrifera_M_contig11785.3694.1 vs. uniprot
Match: A0A6T5NRP6_HETAK (Ribose-5-phosphate isomerase n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6T5NRP6_HETAK)

HSP 1 Score: 88.6 bits (218), Expect = 3.560e-19
Identity = 53/97 (54.64%), Postives = 61/97 (62.89%), Query Frame = 1 
Query:    1 RVGQLLASGDLTDIRAVPTSERTAEQARSLGIPLTTLDAERGAPLDVAIDGADTANLETFGLVKGGXXXXXXXXXXXXXXXXFVVIVDGSKLADGLG 291
            R+G+L+ASG+L DI A+PTS RT EQA SLGIPL TLD    + LDVAIDGAD  + E   LVKG                 F+VIVD SKL DGLG
Sbjct:   77 RLGELMASGELKDIVAIPTSVRTKEQAESLGIPLVTLDTH--SDLDVAIDGADEVDPE-LNLVKGRGGALLREKMVEVCAKKFIVIVDDSKLVDGLG 170
[Close]
BLAST of mRNA_M-pyrifera_M_contig11785.3694.1 vs. uniprot
Match: A0A448ZPR4_9STRA (Ribose-5-phosphate isomerase n=1 Tax=Pseudo-nitzschia multistriata TaxID=183589 RepID=A0A448ZPR4_9STRA)

HSP 1 Score: 88.6 bits (218), Expect = 3.850e-19
Identity = 54/97 (55.67%), Postives = 60/97 (61.86%), Query Frame = 1 
Query:    1 RVGQLLASGDLTDIRAVPTSERTAEQARSLGIPLTTLDAERGAPLDVAIDGADTANLETFGLVKGGXXXXXXXXXXXXXXXXFVVIVDGSKLADGLG 291
            RVG LL SG+L DI A+PTSERT EQA SL IPL TLD    + LDVAIDGAD  + +   LVKGG                F+VIVD SKL DGLG
Sbjct:   76 RVGNLLKSGELKDIVAIPTSERTKEQALSLDIPLVTLDTH--SKLDVAIDGADEVDPD-LNLVKGGGGALLREKMVEVMADKFIVIVDESKLCDGLG 169
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig11785.3694.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A836CI02_9STRA4.720e-2154.64Ribose-5-phosphate isomerase n=1 Tax=Tribonema min... [more]
A0A7S0JD86_9EUKA1.580e-2057.73Ribose-5-phosphate isomerase n=1 Tax=Calcidiscus l... [more]
A0A7S2JKY9_9EUKA4.730e-2056.57Ribose-5-phosphate isomerase (Fragment) n=2 Tax=Ha... [more]
A0A7S1AKJ2_NOCSC5.480e-2056.70Ribose-5-phosphate isomerase n=1 Tax=Noctiluca sci... [more]
K0SNV8_THAOC6.700e-2055.67Ribose-5-phosphate isomerase n=1 Tax=Thalassiosira... [more]
A0A7S3ATH6_9EUKA1.380e-1955.67Ribose-5-phosphate isomerase n=1 Tax=Haptolina eri... [more]
A0A7S0CHS3_9STRA2.670e-1954.64Ribose-5-phosphate isomerase n=1 Tax=Proboscia ine... [more]
A0A835YQR3_9STRA3.530e-1955.67Ribose-5-phosphate isomerase n=1 Tax=Tribonema min... [more]
A0A6T5NRP6_HETAK3.560e-1954.64Ribose-5-phosphate isomerase n=1 Tax=Heterosigma a... [more]
A0A448ZPR4_9STRA3.850e-1955.67Ribose-5-phosphate isomerase n=1 Tax=Pseudo-nitzsc... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig11785contigM-pyrifera_M_contig11785:8600..8902 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score90.5
Seed ortholog evalue4.8e-16
Seed eggNOG ortholog159749.K0SNV8
Preferred nameRPI2
KEGG rclassRC00434
KEGG koko:K01807
KEGG ReactionR01056
KEGG Pathwayko00030,ko00710,ko01100,ko01110,ko01120,ko01130,ko01200,ko01230,map00030,map00710,map01100,map01110,map01120,map01130,map01200,map01230
KEGG ModuleM00004,M00007,M00165,M00167,M00580
Hectar predicted targeting categoryother localisation
GOsGO:0000003,GO:0000271,GO:0003006,GO:0003674,GO:0003824,GO:0004751,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005975,GO:0005976,GO:0006073,GO:0006139,GO:0006213,GO:0006725,GO:0006807,GO:0006950,GO:0006952,GO:0007275,GO:0008150,GO:0008152,GO:0008219,GO:0009058,GO:0009059,GO:0009116,GO:0009119,GO:0009163,GO:0009250,GO:0009507,GO:0009526,GO:0009532,GO:0009534,GO:0009535,GO:0009536,GO:0009570,GO:0009579,GO:0009605,GO:0009607,GO:0009617,GO:0009628,GO:0009719,GO:0009725,GO:0009735,GO:0009791,GO:0009941,GO:0009987,GO:0010033,GO:0010228,GO:0015977,GO:0015979,GO:0016020,GO:0016051,GO:0016853,GO:0016860,GO:0016861,GO:0018130,GO:0019253,GO:0019438,GO:0019685,GO:0022414,GO:0030243,GO:0030244,GO:0031967,GO:0031975,GO:0031976,GO:0031984,GO:0032501,GO:0032502,GO:0033692,GO:0034357,GO:0034404,GO:0034637,GO:0034641,GO:0034645,GO:0034654,GO:0042221,GO:0042455,GO:0042651,GO:0042742,GO:0043170,GO:0043207,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044042,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044262,GO:0044264,GO:0044271,GO:0044281,GO:0044283,GO:0044422,GO:0044424,GO:0044434,GO:0044435,GO:0044436,GO:0044444,GO:0044446,GO:0044464,GO:0046108,GO:0046109,GO:0046131,GO:0046132,GO:0046134,GO:0046483,GO:0048608,GO:0048731,GO:0048856,GO:0050896,GO:0051273,GO:0051274,GO:0051704,GO:0051707,GO:0055035,GO:0055086,GO:0061458,GO:0071704,GO:0072527,GO:0072528,GO:0080167,GO:0098542,GO:1901135,GO:1901137,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576,GO:1901657,GO:1901659
EggNOG free text desc.Ribose 5-phosphate isomerase A (phosphoriboisomerase A)
EggNOG OGs2XFB9@2836,COG0120@1,KOG3075@2759
EC5.3.1.6
COG Functional cat.G
Best tax levelBacillariophyta
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000
Exons1
Model size303
Cds size303
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815696.5331357-CDS-M-pyrifera_M_contig11785:8599..89021622815696.5331357-CDS-M-pyrifera_M_contig11785:8599..8902Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig11785 8600..8902 +
1692277526.3321915-CDS-M-pyrifera_M_contig11785:8599..89021692277526.3321915-CDS-M-pyrifera_M_contig11785:8599..8902Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig11785 8600..8902 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig11785.3694.1prot_M-pyrifera_M_contig11785.3694.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig11785 8600..8902 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig11785.3694.1

>prot_M-pyrifera_M_contig11785.3694.1 ID=prot_M-pyrifera_M_contig11785.3694.1|Name=mRNA_M-pyrifera_M_contig11785.3694.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=101bp
RVGQLLASGDLTDIRAVPTSERTAEQARSLGIPLTTLDAERGAPLDVAID
GADTANLETFGLVKGGGGALLREKLVAAAAKKFVVIVDGSKLADGLGAAL
*
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mRNA from alignment at M-pyrifera_M_contig11785:8600..8902+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig11785.3694.1 ID=mRNA_M-pyrifera_M_contig11785.3694.1|Name=mRNA_M-pyrifera_M_contig11785.3694.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=303bp|location=Sequence derived from alignment at M-pyrifera_M_contig11785:8600..8902+ (Macrocystis pyrifera P11B4 male)
CGGGTCGGGCAGCTGCTAGCCTCGGGCGACCTCACGGACATCAGGGCGGT
GCCCACTTCCGAGCGCACGGCGGAGCAGGCCCGGTCCCTGGGCATCCCCC
TTACCACCCTCGACGCGGAGAGGGGTGCGCCGCTGGACGTCGCTATCGAC
GGTGCGGACACCGCCAACCTGGAAACCTTCGGCCTTGTCAAGGGAGGGGG
GGGGGCGCTGCTGAGGGAGAAGCTGGTGGCGGCGGCGGCGAAAAAGTTCG
TCGTTATTGTGGACGGGTCTAAGCTTGCTGATGGCCTGGGAGCTGCGTTG
TGA
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig11785:8600..8902+

>mRNA_M-pyrifera_M_contig11785.3694.1 ID=mRNA_M-pyrifera_M_contig11785.3694.1|Name=mRNA_M-pyrifera_M_contig11785.3694.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=606bp|location=Sequence derived from alignment at M-pyrifera_M_contig11785:8600..8902+ (Macrocystis pyrifera P11B4 male)
CGGGTCGGGCAGCTGCTAGCCTCGGGCGACCTCACGGACATCAGGGCGGT
GCCCACTTCCGAGCGCACGGCGGAGCAGGCCCGGTCCCTGGGCATCCCCC
TTACCACCCTCGACGCGGAGAGGGGTGCGCCGCTGGACGTCGCTATCGAC
GGTGCGGACACCGCCAACCTGGAAACCTTCGGCCTTGTCAAGGGAGGGGG
GGGGGCGCTGCTGAGGGAGAAGCTGGTGGCGGCGGCGGCGAAAAAGTTCG
TCGTTATTGTGGACGGGTCTAAGCTTGCTGATGGCCTGGGAGCTGCGTTG
TGACGGGTCGGGCAGCTGCTAGCCTCGGGCGACCTCACGGACATCAGGGC
GGTGCCCACTTCCGAGCGCACGGCGGAGCAGGCCCGGTCCCTGGGCATCC
CCCTTACCACCCTCGACGCGGAGAGGGGTGCGCCGCTGGACGTCGCTATC
GACGGTGCGGACACCGCCAACCTGGAAACCTTCGGCCTTGTCAAGGGAGG
GGGGGGGGCGCTGCTGAGGGAGAAGCTGGTGGCGGCGGCGGCGAAAAAGT
TCGTCGTTATTGTGGACGGGTCTAAGCTTGCTGATGGCCTGGGAGCTGCG
TTGTGA
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