mRNA_M-pyrifera_M_contig117836.3692.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig117836.3692.1
Unique NamemRNA_M-pyrifera_M_contig117836.3692.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig117836.3692.1 vs. uniprot
Match: A0A7Y5CBW3_9BACT (Uncharacterized protein n=1 Tax=Candidatus Hydrogenedentes bacterium TaxID=2030809 RepID=A0A7Y5CBW3_9BACT)

HSP 1 Score: 108 bits (271), Expect = 2.530e-25
Identity = 68/187 (36.36%), Postives = 102/187 (54.55%), Query Frame = 1
Query:    4 GLEDCGCFGTAFQMGPLESIAKNVVLLIMTGYAWYELHN---------ASPDVDRKLRSPALAA---AVAGLAAVFAIGILNDEAVAPDKNLVEVVLSDDQLKEQPFAKFVYKKEDGTEINLGEGKYIVPVLNATCDHCRDSIAPLNEASQTPDFPQVVGLVMADDEAAIDELRAMTSPQFEMFRID 528
            GL DCGCFG   +MGP  SIAKNVVLL MTG AW+   N           P V++  +S   AA   A+AG+  V     + + A AP  +     ++    + +PFA+FV  +  G  + L +G+Y+V +L+A+C+HC+     LNE  Q P  P VV ++M  D   +++  ++T PQF +  I+
Sbjct:   98 GLADCGCFGEYIKMGPGTSIAKNVVLLGMTGMAWFGFRNRPVAAQAEEGDPAVEKPRKSNQTAAVGLALAGILIVAGALAMGEPAPAPT-SAANTPVNTAIAEAKPFAEFV-PRLGGAPVPLAQGEYLVAMLSASCEHCQAVARTLNELMQAPGAPMVVAIMMGTD-GEMNDFMSLTDPQFPIQTIE 281          
BLAST of mRNA_M-pyrifera_M_contig117836.3692.1 vs. uniprot
Match: A0A7C3SSC3_9BACT (Uncharacterized protein n=1 Tax=Candidatus Hydrogenedentes bacterium TaxID=2030809 RepID=A0A7C3SSC3_9BACT)

HSP 1 Score: 70.9 bits (172), Expect = 2.480e-11
Identity = 51/178 (28.65%), Postives = 87/178 (48.88%), Query Frame = 1
Query:    1 HGLEDCGCFGTAFQMGPLESIAKNVVLLIMT-----GYAWYELHNASPDVDRKLRSPALAAAVAGLAAVFAIGILNDEAVAPDKNLVEVVLSDDQLKEQPFAKFVYKKEDGTEINLGEGKYIVPVLNATCDHCRDSIAPLNEASQTPDFPQVVGLVMADDEAAIDELRAMTSPQFEMF 519
            + L+DCGCFG   +MGPLESI KN++L+I++     G    E  +       K   P +   +  L + F    L  E +  DK  VE    D+ +   P++K   +  DG   +LG+G+Y+V +L+  CDHC +    +N+       P+++ L + + +   +E      P F ++
Sbjct:  106 NDLKDCGCFGK-LEMGPLESIIKNIILIIISIACFSGVKPIEERSEQKKTYIKYYLPLVILII--LTSFFCYQQLQSEQI--DKKNVE----DNNIT--PYSKMKIEI-DGNIYDLGQGEYLVALLSFGCDHCIEESPKINDYMSINGIPKIIALCLEESQEEKEEFINKVQPIFPIY 271          
BLAST of mRNA_M-pyrifera_M_contig117836.3692.1 vs. uniprot
Match: A0A7Y5G9C5_9BACT (Uncharacterized protein n=1 Tax=bacterium TaxID=1869227 RepID=A0A7Y5G9C5_9BACT)

HSP 1 Score: 65.1 bits (157), Expect = 2.330e-9
Identity = 42/166 (25.30%), Postives = 75/166 (45.18%), Query Frame = 1
Query:   13 DCGCFGTAFQMGPLESIAKNVVLLIMTGYAWYELHNASPDVDRKLRSPALAAAVAGLAAVFAIGILNDEAVAPDKNLVEVVLSDDQLKEQPFAKFVYKKEDGTEINLGEGKYIVPVLNATCDHCRDSIAPLNEASQTPDFPQVVGLVMADDEAAIDELRAMTSPQF 510
            DCGCFG    M P+ESI KN+VLL++     Y +   +  V    + PA         A+  I ++     AP K + + V          F  +   +E G  ++L EG+ ++ + N  C+HC+ +   L EA +    P+   L  +++  ++D    +   ++
Sbjct:  102 DCGCFGKLLAMSPIESIVKNIVLLMLV----YFVFRKAETVHHSWKIPA---------AILFISVVCVWTWAPVKTVDDFV----------FKNYTNFEERG-RVDLAEGENLICIFNLDCEHCQAAARELTEARKASKIPESYILFFSEEGISVDSFFTIAGARY 243          
BLAST of mRNA_M-pyrifera_M_contig117836.3692.1 vs. uniprot
Match: A0A7V4FJW0_9BACT (Uncharacterized protein n=1 Tax=Ignavibacteria bacterium TaxID=2053306 RepID=A0A7V4FJW0_9BACT)

HSP 1 Score: 62.4 bits (150), Expect = 2.220e-8
Identity = 44/174 (25.29%), Postives = 79/174 (45.40%), Query Frame = 1
Query:   10 EDCGCFGTAFQMGPLESIAKNVVLLIMTGYAWYELHNASPDVDRKLRSPALAAAVAGLAAVFAIGILNDEAVAPDKNLVEVVLSDDQLKEQPFAKFVYKKEDGTEINLGEGKYIVPVLNATCDHCRDSIAPLNEASQTPD-FPQVVGLVMADDEAAIDELRAMTSPQFEMFRID 528
            E+CGCFG   +M P+ESI KN++L+I+    + +      D  +K+  P LA        VF I  + D                  + E  F+KF+Y +  G  ++L  G+ +V V +  C+HC+ + + + +  +  +  P +  L  ++    +D   ++T   F    ID
Sbjct:  105 ENCGCFGEMLKMSPIESILKNILLIILLVILFVK----GNDNRKKIFLP-LAVVPLVFVMVFIISPIRD------------------VSEFKFSKFIYFEGAG-RVDLTSGEKLVAVFSLDCEHCQQTASEIADLQRNENNLPDLYVLFFSEGNFTVDLFNSITHSNFSYHMID 254          
BLAST of mRNA_M-pyrifera_M_contig117836.3692.1 vs. uniprot
Match: A0A2E7MLW5_9BACT (Uncharacterized protein n=1 Tax=Gemmatimonadetes bacterium TaxID=2026742 RepID=A0A2E7MLW5_9BACT)

HSP 1 Score: 57.0 bits (136), Expect = 1.880e-6
Identity = 41/174 (23.56%), Postives = 78/174 (44.83%), Query Frame = 1
Query:   13 DCGCFGTAFQMGPLESIAKNVVLLIMTGYAWYELHNASPDVDRKLRSPALAAAVAGLAAVFAIGILNDEAVAPDKNL-VEVVLSDDQLKEQPFAKFVYKKEDGTEINLGEGKYIVPVLNATCDHCRDSIAPLNEASQTPDFPQVVGLVMADDE--AAIDELRAMTSPQFEMFRI 525
            +CGCFG   +  P E+  ++  +L+   +AW+   +       + +   +  AV  L  V  +  +  EA     +L V + LS  +++E             ++I+LG+G Y+V + +  C  C+  +  LNE +  P  P +VGL   +      I+E +    P++ +  I
Sbjct:  107 NCGCFGALVERTPGEAAIEDAAMLVALIFAWWGTWSVVRPAWPQSKWIVIGGAVLALV-VCGVRFMPHEARLDGSDLQVGLELSGIEIQE-------------SDIDLGQGDYLVELFSPKCGRCKKEVPKLNEWTDKPGLPPIVGLYNIEQGKGGVIEEFKESLQPRYTIASI 266          
BLAST of mRNA_M-pyrifera_M_contig117836.3692.1 vs. uniprot
Match: A0A1G1BM68_9BACT (Uncharacterized protein n=3 Tax=Ignavibacteria TaxID=795747 RepID=A0A1G1BM68_9BACT)

HSP 1 Score: 56.6 bits (135), Expect = 2.380e-6
Identity = 43/172 (25.00%), Postives = 76/172 (44.19%), Query Frame = 1
Query:   10 EDCGCFGTAFQMGPLESIAKNVVLLIMTGYAWYELHNASPDVDRKLRSPALAAAVAGLAAVFAIGILNDEAVAPDKNLVEVVLSDDQLKEQPFAKFVYKKEDGTEINLGEGKYIVPVLNATCDHCRDSIAPLNEASQTPDFPQVVGLVMADDEAAIDELRAMTSPQFEMFRI 525
            ++CGCFG   ++ P+ESI KN++L+I        L     +  + +  PA +  +  +A VF I  +N             V+ D   K   +  F    E    ++L  G  ++ V N  C+HC+ +   L +      FP++  L  ++   ++D  + +T   F  FRI
Sbjct:  102 DNCGCFGEMLKLSPVESIFKNIMLMIPA----VVLERLIKEERKTVWIPA-SLLILSIALVFLISPVN-------------VVRD--FKFNQYTSF----EGSGRVDLSSGNKLLAVFNTECEHCQAAAKDLAKLKSHHSFPEMYVLFFSEGVVSVDSFKTVTHSNFP-FRI 248          
BLAST of mRNA_M-pyrifera_M_contig117836.3692.1 vs. uniprot
Match: A0A7W1SRS9_9BACT (DoxX family membrane protein n=1 Tax=Bacteroidetes bacterium TaxID=1898104 RepID=A0A7W1SRS9_9BACT)

HSP 1 Score: 55.8 bits (133), Expect = 4.620e-6
Identity = 42/178 (23.60%), Postives = 79/178 (44.38%), Query Frame = 1
Query:   13 DCGCFGTAFQMGPLESIAKNVVL----LIMTGYAWYELHNASPDVDRKLRSPALAAAVAGLAAVFAIGILNDEAVAPD-KNLVEVVLSDDQLKEQPFAKFVYKKEDGTEINLGEGKYIVPVLNATCDHCRDSIAPLNEASQTPDFPQVVGLVMADDEAAIDELR-AMTSPQFEMFRID 528
            DCGC GT FQ+ PL+SI KN++L    L +   +W   + A P          ++ A+  L++ F + + + +++     N V    +D+ L         + ++ G  +N  EG  ++  L+ +C HC      +    +  + P V  + +  +E   D  +    S  ++MF  D
Sbjct:  100 DCGCMGTYFQLTPLQSIIKNILLITAILFIPSKSWILKYKAIP----------ISLALLALSSGFLLHLPDFDSITNKYSNKVNFTFNDELLG--------FFEDKGEFVNFKEGDKLIAFLSVSCQHCEHLAQKIAILQKEMELPPVYYVFIGKEEKVPDFFKKTKRSQSYKMFNDD 259          
BLAST of mRNA_M-pyrifera_M_contig117836.3692.1 vs. uniprot
Match: A0A1Q3X9I6_9BACT (Uncharacterized protein n=1 Tax=Bacteroidetes bacterium 46-16 TaxID=1895925 RepID=A0A1Q3X9I6_9BACT)

HSP 1 Score: 55.5 bits (132), Expect = 6.770e-6
Identity = 49/179 (27.37%), Postives = 82/179 (45.81%), Query Frame = 1
Query:    1 HGLEDCGCFGTAFQMGPLESIAKNVVLLIMTGYAWYELHNASPDVDRKLRSPALAAAVAGLAAVFAIGILNDEAVAPDKNLVEVVLSDDQLKEQPFAKFVYKKEDGTEINLGEGKYIVPVLNATCDHCRDSIAPLNEA-SQTPDFPQVVGLVMAD--DEAAIDELRAMTSPQFEMFRID 528
            HG  +CGCFG   +M PL+S+ KNV+++I+T    Y ++ A P  ++++      A +  +AA+    ILN   +          +  + L         YK+       L  GK+IV  ++ TC HCR +   L+    + P  P  + L  +D  ++   DE  AM  P   +  I+
Sbjct:  128 HG--NCGCFGDNIEMTPLQSVWKNVIMIIITLILIY-IYPAKPYKNQEI-----IAVLLFMAALVTPFILNPLDLDNKPEAAHQTIDLNPL---------YKEAPVPATELRTGKHIVAFMSLTCPHCRKAAYMLHVIHDKNPGIPIYILLSGSDNHEKEFFDETHAMDVPHLHVKDIE 289          
BLAST of mRNA_M-pyrifera_M_contig117836.3692.1 vs. uniprot
Match: A0A4Q3CZ25_9SPHI (Uncharacterized protein n=1 Tax=Sphingobacteriales bacterium TaxID=2044944 RepID=A0A4Q3CZ25_9SPHI)

HSP 1 Score: 55.1 bits (131), Expect = 8.770e-6
Identity = 43/145 (29.66%), Postives = 62/145 (42.76%), Query Frame = 1
Query:   13 DCGCFGTAFQMGPLESIAKNVVLLIMTGYAWYELHNASPDVDRKLRSPALAAAVAGLAAVFAIGILNDEAVAPDKNLVEVVLSDDQLKEQPFAKFVYKKEDGTEI---NLGEGKYIVPVLNATCDHCRDSIAPLNEAS-QTPDFP 435
            +CGC G  F M PL+SI KNVVLL++ G  W      + +    + S  LAA V+                      V  +L   Q K     K +Y+  +   I    L +GK+ V  L+ TC HC  +   L++   + PD P
Sbjct:  109 NCGCMGDRFYMPPLQSILKNVVLLVLIGIIWKGAKRNNNNTQNWVASLLLAALVS----------------------VPYILFPYQTKVLKIEK-IYQATEAHRIPKEELRKGKHFVAFLSLTCSHCMVAGEALSKLKKENPDMP 230          
BLAST of mRNA_M-pyrifera_M_contig117836.3692.1 vs. uniprot
Match: A0A1J4TX86_9BACT (Methylamine utilization protein MauE n=4 Tax=unclassified Ignavibacteria TaxID=1798416 RepID=A0A1J4TX86_9BACT)

HSP 1 Score: 52.4 bits (124), Expect = 8.100e-5
Identity = 46/202 (22.77%), Postives = 79/202 (39.11%), Query Frame = 1
Query:   13 DCGCFGTAFQMGPLESIAKNVVLLIMTGYAWYELHNASPDVDRKLRSPALAAAVAGLAAVFAIGILNDEAVAPDKNLVEVVLSDDQLK-EQPFA----------------------------KFV-YKKEDGTEINLGEGKYIVPVLNATCDHCRDSIAPLNEASQTPDFPQVVGLVMADDEAAIDELRAMTSPQFEMFRID 528
            +CGCFG    M PL +  KN+++L +  Y    L+   P  ++  +       +   + +F   +          NL E V+  D  + +QP +                            +F  Y      ++NL EGK I+ +  A CDHCR++   +   S+  +FP+V  L M ++   I +    T   F    +D
Sbjct:  103 NCGCFGQLIDMSPLAAFIKNMIMLGLLIY----LYRIIPAEEKGKQKSICLILILFSSLLFMFILFPFSPCRQKINLEETVIKVDSAQSKQPSSTSSEAAADIGKKTTQNKSVVSEPKKVTSRFAGYSTFGNKQVNLDEGKKIICLFAAGCDHCREAAKEIYSLSKKDNFPEVYILFMDEETNLISDFFKETGGTFPYRVVD 300          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig117836.3692.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 10
Match NameE-valueIdentityDescription
A0A7Y5CBW3_9BACT2.530e-2536.36Uncharacterized protein n=1 Tax=Candidatus Hydroge... [more]
A0A7C3SSC3_9BACT2.480e-1128.65Uncharacterized protein n=1 Tax=Candidatus Hydroge... [more]
A0A7Y5G9C5_9BACT2.330e-925.30Uncharacterized protein n=1 Tax=bacterium TaxID=18... [more]
A0A7V4FJW0_9BACT2.220e-825.29Uncharacterized protein n=1 Tax=Ignavibacteria bac... [more]
A0A2E7MLW5_9BACT1.880e-623.56Uncharacterized protein n=1 Tax=Gemmatimonadetes b... [more]
A0A1G1BM68_9BACT2.380e-625.00Uncharacterized protein n=3 Tax=Ignavibacteria Tax... [more]
A0A7W1SRS9_9BACT4.620e-623.60DoxX family membrane protein n=1 Tax=Bacteroidetes... [more]
A0A1Q3X9I6_9BACT6.770e-627.37Uncharacterized protein n=1 Tax=Bacteroidetes bact... [more]
A0A4Q3CZ25_9SPHI8.770e-629.66Uncharacterized protein n=1 Tax=Sphingobacteriales... [more]
A0A1J4TX86_9BACT8.100e-522.77Methylamine utilization protein MauE n=4 Tax=uncla... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig117836contigM-pyrifera_M_contig117836:1..528 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size528
Cds size528
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815696.4608846-CDS-M-pyrifera_M_contig117836:0..5281622815696.4608846-CDS-M-pyrifera_M_contig117836:0..528Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig117836 1..528 +
1692277526.3130052-CDS-M-pyrifera_M_contig117836:0..5281692277526.3130052-CDS-M-pyrifera_M_contig117836:0..528Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig117836 1..528 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig117836.3692.1prot_M-pyrifera_M_contig117836.3692.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig117836 1..528 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig117836.3692.1

>prot_M-pyrifera_M_contig117836.3692.1 ID=prot_M-pyrifera_M_contig117836.3692.1|Name=mRNA_M-pyrifera_M_contig117836.3692.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=176bp
HGLEDCGCFGTAFQMGPLESIAKNVVLLIMTGYAWYELHNASPDVDRKLR
SPALAAAVAGLAAVFAIGILNDEAVAPDKNLVEVVLSDDQLKEQPFAKFV
YKKEDGTEINLGEGKYIVPVLNATCDHCRDSIAPLNEASQTPDFPQVVGL
VMADDEAAIDELRAMTSPQFEMFRID
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mRNA from alignment at M-pyrifera_M_contig117836:1..528+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig117836.3692.1 ID=mRNA_M-pyrifera_M_contig117836.3692.1|Name=mRNA_M-pyrifera_M_contig117836.3692.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=528bp|location=Sequence derived from alignment at M-pyrifera_M_contig117836:1..528+ (Macrocystis pyrifera P11B4 male)
CACGGGCTTGAAGATTGCGGATGTTTTGGCACGGCCTTTCAAATGGGACC CCTTGAATCGATCGCCAAGAACGTCGTCCTGCTGATCATGACGGGATATG CCTGGTACGAGTTACACAACGCTTCGCCCGATGTTGATCGCAAATTGCGG AGTCCAGCGTTGGCGGCTGCCGTTGCGGGGCTCGCGGCTGTTTTTGCTAT TGGAATTCTGAATGATGAAGCGGTTGCCCCGGACAAGAACTTGGTCGAGG TGGTACTAAGTGACGACCAACTGAAAGAACAACCTTTCGCCAAATTTGTC TACAAGAAAGAAGACGGCACGGAAATTAATCTTGGCGAAGGGAAGTACAT CGTCCCGGTGCTTAACGCGACGTGCGATCATTGCCGAGACTCTATCGCGC CTCTGAACGAAGCTTCACAAACACCGGATTTCCCGCAGGTGGTCGGCCTC GTGATGGCGGATGACGAGGCGGCCATAGATGAATTGCGGGCAATGACGTC GCCACAGTTTGAAATGTTCAGGATTGAT
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig117836:1..528+

>mRNA_M-pyrifera_M_contig117836.3692.1 ID=mRNA_M-pyrifera_M_contig117836.3692.1|Name=mRNA_M-pyrifera_M_contig117836.3692.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=1056bp|location=Sequence derived from alignment at M-pyrifera_M_contig117836:1..528+ (Macrocystis pyrifera P11B4 male)
CACGGGCTTGAAGATTGCGGATGTTTTGGCACGGCCTTTCAAATGGGACC
CCTTGAATCGATCGCCAAGAACGTCGTCCTGCTGATCATGACGGGATATG
CCTGGTACGAGTTACACAACGCTTCGCCCGATGTTGATCGCAAATTGCGG
AGTCCAGCGTTGGCGGCTGCCGTTGCGGGGCTCGCGGCTGTTTTTGCTAT
TGGAATTCTGAATGATGAAGCGGTTGCCCCGGACAAGAACTTGGTCGAGG
TGGTACTAAGTGACGACCAACTGAAAGAACAACCTTTCGCCAAATTTGTC
TACAAGAAAGAAGACGGCACGGAAATTAATCTTGGCGAAGGGAAGTACAT
CGTCCCGGTGCTTAACGCGACGTGCGATCATTGCCGAGACTCTATCGCGC
CTCTGAACGAAGCTTCACAAACACCGGATTTCCCGCAGGTGGTCGGCCTC
GTGATGGCGGATGACGAGGCGGCCATAGATGAATTGCGGGCAATGACGTC
GCCACAGTTTGAAATGTTCAGGATTGATCACGGGCTTGAAGATTGCGGAT
GTTTTGGCACGGCCTTTCAAATGGGACCCCTTGAATCGATCGCCAAGAAC
GTCGTCCTGCTGATCATGACGGGATATGCCTGGTACGAGTTACACAACGC
TTCGCCCGATGTTGATCGCAAATTGCGGAGTCCAGCGTTGGCGGCTGCCG
TTGCGGGGCTCGCGGCTGTTTTTGCTATTGGAATTCTGAATGATGAAGCG
GTTGCCCCGGACAAGAACTTGGTCGAGGTGGTACTAAGTGACGACCAACT
GAAAGAACAACCTTTCGCCAAATTTGTCTACAAGAAAGAAGACGGCACGG
AAATTAATCTTGGCGAAGGGAAGTACATCGTCCCGGTGCTTAACGCGACG
TGCGATCATTGCCGAGACTCTATCGCGCCTCTGAACGAAGCTTCACAAAC
ACCGGATTTCCCGCAGGTGGTCGGCCTCGTGATGGCGGATGACGAGGCGG
CCATAGATGAATTGCGGGCAATGACGTCGCCACAGTTTGAAATGTTCAGG
ATTGAT
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