mRNA_M-pyrifera_M_contig117809.3682.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig117809.3682.1
Unique NamemRNA_M-pyrifera_M_contig117809.3682.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig117809.3682.1 vs. uniprot
Match: A0A7Y5FB54_9BACT (Flagellar biosynthesis anti-sigma factor FlgM n=1 Tax=Candidatus Hydrogenedentes bacterium TaxID=2030809 RepID=A0A7Y5FB54_9BACT)

HSP 1 Score: 77.0 bits (188), Expect = 2.430e-16
Identity = 45/99 (45.45%), Postives = 67/99 (67.68%), Query Frame = 1
Query:    1 MVNIHGLGGVPEPTSDRPSGSREKRRDNNVNADNRR-DGVDISSQGRQAADISRIKAIADQEPDIRPERVEQAKQAIENGAHKNESVIVEIAKRLEDLL 294
            MV +HG+GGVPEP  +RP   R+KRRD  V + +   D V ISS+ + AA ++ + A+A Q  D+R +RV+QAKQA+E G +K+  V+ E+A+R+   L
Sbjct:    1 MVGVHGVGGVPEPAPERPVNVRDKRRDEAVASSSAETDDVLISSEAQAAAKLTALVALAKQS-DVRQDRVDQAKQALEQGTYKHPDVVSELAQRISKFL 98          
BLAST of mRNA_M-pyrifera_M_contig117809.3682.1 vs. uniprot
Match: A0A7V7EEC0_9BACT (FlgM domain-containing protein n=1 Tax=Candidatus Hydrogenedentes bacterium TaxID=2030809 RepID=A0A7V7EEC0_9BACT)

HSP 1 Score: 65.1 bits (157), Expect = 1.190e-11
Identity = 38/98 (38.78%), Postives = 61/98 (62.24%), Query Frame = 1
Query:    1 MVNIHGLGGVPEPTSDRPSGSREKRRDNNVNADNRRDGVDISSQGRQAADISRIKAIADQEPDIRPERVEQAKQAIENGAHKNESVIVEIAKRLEDLL 294
            MV I G+GG+ EPT +RP+  R+ R+ ++  +   +D + ISS+ + AA ++R   IA   P +RPE+V QAK+ +E   +K   V+ E+AKR+   L
Sbjct:    1 MVGIKGIGGIQEPTPERPANVRD-RKTSDTKSPEAKDDLLISSEAQAAATLARTIQIAKSAPQVRPEKVAQAKERLEREDYKRPEVVREVAKRVAKYL 97          
BLAST of mRNA_M-pyrifera_M_contig117809.3682.1 vs. uniprot
Match: A0A831XQE7_9BACT (FlgM domain-containing protein n=1 Tax=Candidatus Hydrogenedentes bacterium TaxID=2030809 RepID=A0A831XQE7_9BACT)

HSP 1 Score: 62.4 bits (150), Expect = 1.380e-10
Identity = 36/98 (36.73%), Postives = 58/98 (59.18%), Query Frame = 1
Query:    1 MVNIHGLGGVPEPTSDRPSGSREKRRDNNVNADNRRDGVDISSQGRQAADISRIKAIADQEPDIRPERVEQAKQAIENGAHKNESVIVEIAKRLEDLL 294
            MV I GLG +PEP  DRP+  RE +       D  +D V ISS+ + AA ++RI +     P +R +RV+ A++ +E G ++   VI ++A+R++  L
Sbjct:    1 MVGIEGLGEIPEPKPDRPAKVREVKAGKAPRVDKPKDDVLISSEAQAAASVARIISETKSIPTVRTDRVDAARERLEQGDYQRPEVIAKVAERIDKYL 98          
BLAST of mRNA_M-pyrifera_M_contig117809.3682.1 vs. uniprot
Match: A0A7V5STC5_9BACT (Flagellar biosynthesis anti-sigma factor FlgM n=1 Tax=Bacteroidetes bacterium TaxID=1898104 RepID=A0A7V5STC5_9BACT)

HSP 1 Score: 60.8 bits (146), Expect = 5.040e-10
Identity = 36/97 (37.11%), Postives = 59/97 (60.82%), Query Frame = 1
Query:    4 VNIHGLGGVPEPTSDRPSGSREKRRDNNVNADNRRDGVDISSQGRQAADISRIKAIADQEPDIRPERVEQAKQAIENGAHKNESVIVEIAKRLEDLL 294
            + I GL G+ +  +        K+ DN  N+D     ++IS + +Q AD+S+IK I +Q PDIR +++ + KQ IE+GA+ +E VI  +A+RL  +L
Sbjct:    1 MEIRGLNGINKIDNSNNLNRVSKKLDNKANSDV----IEISEEAKQLADLSKIKEIVNQTPDIRLDKINEVKQKIESGAYNSEEVINTVAERLMKIL 93          
BLAST of mRNA_M-pyrifera_M_contig117809.3682.1 vs. uniprot
Match: A0A7C7J2Z5_9BACT (FlgM domain-containing protein n=2 Tax=Bacteria TaxID=2 RepID=A0A7C7J2Z5_9BACT)

HSP 1 Score: 59.7 bits (143), Expect = 3.020e-9
Identity = 42/103 (40.78%), Postives = 60/103 (58.25%), Query Frame = 1
Query:    1 MVNIHGLGGVPEPTS-DRPSGSREKRR----DNNVNADNRRDGVDISSQGRQAADISRIKAIADQEPDIRPERVEQAKQAIENGAHKNESVIVEIAKRLEDLL 294
            MV I G+ GVP+P+  +RPSG+R   +    D   NA N  D V IS+Q + AA +    + A+ +PDIR +RV  AK AIE   +KN  V+  +A+R+   L
Sbjct:   27 MVGIQGIAGVPDPSKPERPSGTRSNSKSEAADAGSNAANS-DDVVISNQAQAAAQVIDALSSAENQPDIRADRVAAAKAAIERADYKNPDVVEVVAQRISKFL 128          
BLAST of mRNA_M-pyrifera_M_contig117809.3682.1 vs. uniprot
Match: A0A2A5DKX3_9BACT (FlgM domain-containing protein n=1 Tax=Candidatus Hydrogenedentes bacterium TaxID=2030809 RepID=A0A2A5DKX3_9BACT)

HSP 1 Score: 52.8 bits (125), Expect = 7.750e-7
Identity = 33/98 (33.67%), Postives = 51/98 (52.04%), Query Frame = 1
Query:    1 MVNIHGLGGVPEPTSDRPSGSREKRRDNNVNADNRRDGVDISSQGRQAADISRIKAIADQEPDIRPERVEQAKQAIENGAHKNESVIVEIAKRLEDLL 294
            M  I G+GG+PEP SDRPSG+R+  R  +                   A +++       + DIR +RVE AK A+++G ++N  V+  +A+RL   L
Sbjct:    1 MGGIQGIGGIPEPRSDRPSGARDTDRTASXXXXXXXXXXXXXXXXXXXAVVAQALQATSTQSDIRLDRVEAAKAALDSGDYQNPDVVATVAERLSKFL 98          
BLAST of mRNA_M-pyrifera_M_contig117809.3682.1 vs. uniprot
Match: A0A7V3RLN3_9SPIR (Flagellar biosynthesis anti-sigma factor FlgM n=1 Tax=Spirochaetes bacterium TaxID=2202144 RepID=A0A7V3RLN3_9SPIR)

HSP 1 Score: 49.3 bits (116), Expect = 1.650e-5
Identity = 23/62 (37.10%), Postives = 45/62 (72.58%), Query Frame = 1
Query:  109 DGVDISSQGRQAADISRIKAIADQEPDIRPERVEQAKQAIENGAHKNESVIVEIAKRLEDLL 294
            D  DIS + RQ A+ ++I+ + ++ PD+R ++V++A++ ++NGA++ E VI  +A+RL  +L
Sbjct:   33 DSADISLEARQLAEEAKIREMLEKTPDVREDKVQEAREKLQNGAYEKEEVINTVAERLMKVL 94          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig117809.3682.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 7
Match NameE-valueIdentityDescription
A0A7Y5FB54_9BACT2.430e-1645.45Flagellar biosynthesis anti-sigma factor FlgM n=1 ... [more]
A0A7V7EEC0_9BACT1.190e-1138.78FlgM domain-containing protein n=1 Tax=Candidatus ... [more]
A0A831XQE7_9BACT1.380e-1036.73FlgM domain-containing protein n=1 Tax=Candidatus ... [more]
A0A7V5STC5_9BACT5.040e-1037.11Flagellar biosynthesis anti-sigma factor FlgM n=1 ... [more]
A0A7C7J2Z5_9BACT3.020e-940.78FlgM domain-containing protein n=2 Tax=Bacteria Ta... [more]
A0A2A5DKX3_9BACT7.750e-733.67FlgM domain-containing protein n=1 Tax=Candidatus ... [more]
A0A7V3RLN3_9SPIR1.650e-537.10Flagellar biosynthesis anti-sigma factor FlgM n=1 ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig117809contigM-pyrifera_M_contig117809:41..340 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size300
Cds size300
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815695.924946-CDS-M-pyrifera_M_contig117809:40..3401622815695.924946-CDS-M-pyrifera_M_contig117809:40..340Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig117809 41..340 -
1692277526.0517886-CDS-M-pyrifera_M_contig117809:40..3401692277526.0517886-CDS-M-pyrifera_M_contig117809:40..340Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig117809 41..340 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig117809.3682.1prot_M-pyrifera_M_contig117809.3682.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig117809 41..340 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig117809.3682.1

>prot_M-pyrifera_M_contig117809.3682.1 ID=prot_M-pyrifera_M_contig117809.3682.1|Name=mRNA_M-pyrifera_M_contig117809.3682.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=100bp
MVNIHGLGGVPEPTSDRPSGSREKRRDNNVNADNRRDGVDISSQGRQAAD
ISRIKAIADQEPDIRPERVEQAKQAIENGAHKNESVIVEIAKRLEDLLS*
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mRNA from alignment at M-pyrifera_M_contig117809:41..340-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig117809.3682.1 ID=mRNA_M-pyrifera_M_contig117809.3682.1|Name=mRNA_M-pyrifera_M_contig117809.3682.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=300bp|location=Sequence derived from alignment at M-pyrifera_M_contig117809:41..340- (Macrocystis pyrifera P11B4 male)
ATGGTAAATATTCATGGACTTGGCGGCGTACCGGAGCCTACCTCGGATCG GCCTAGCGGCTCCCGAGAAAAGCGCCGGGACAACAACGTCAATGCAGATA ATCGTCGCGACGGAGTGGATATCAGCTCCCAAGGGCGTCAGGCCGCCGAT ATTTCACGAATTAAGGCGATTGCCGACCAAGAACCCGATATTCGGCCAGA GCGTGTTGAACAGGCCAAGCAGGCCATCGAGAACGGTGCTCACAAGAATG AGTCTGTAATTGTGGAGATTGCCAAGCGGCTCGAAGACCTGCTCTCTTAG
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig117809:41..340-

>mRNA_M-pyrifera_M_contig117809.3682.1 ID=mRNA_M-pyrifera_M_contig117809.3682.1|Name=mRNA_M-pyrifera_M_contig117809.3682.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=600bp|location=Sequence derived from alignment at M-pyrifera_M_contig117809:41..340- (Macrocystis pyrifera P11B4 male)
ATGGTAAATATTCATGGACTTGGCGGCGTACCGGAGCCTACCTCGGATCG
GCCTAGCGGCTCCCGAGAAAAGCGCCGGGACAACAACGTCAATGCAGATA
ATCGTCGCGACGGAGTGGATATCAGCTCCCAAGGGCGTCAGGCCGCCGAT
ATTTCACGAATTAAGGCGATTGCCGACCAAGAACCCGATATTCGGCCAGA
GCGTGTTGAACAGGCCAAGCAGGCCATCGAGAACGGTGCTCACAAGAATG
AGTCTGTAATTGTGGAGATTGCCAAGCGGCTCGAAGACCTGCTCTCTTAG
ATGGTAAATATTCATGGACTTGGCGGCGTACCGGAGCCTACCTCGGATCG
GCCTAGCGGCTCCCGAGAAAAGCGCCGGGACAACAACGTCAATGCAGATA
ATCGTCGCGACGGAGTGGATATCAGCTCCCAAGGGCGTCAGGCCGCCGAT
ATTTCACGAATTAAGGCGATTGCCGACCAAGAACCCGATATTCGGCCAGA
GCGTGTTGAACAGGCCAAGCAGGCCATCGAGAACGGTGCTCACAAGAATG
AGTCTGTAATTGTGGAGATTGCCAAGCGGCTCGAAGACCTGCTCTCTTAG
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