mRNA_M-pyrifera_M_contig117806.3681.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig117806.3681.1
Unique NamemRNA_M-pyrifera_M_contig117806.3681.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig117806.3681.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig117806contigM-pyrifera_M_contig117806:145..546 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score68.9
Seed ortholog evalue2e-09
Seed eggNOG ortholog44689.DDB0234209
Preferred namePIKFYVE
KEGG rclassRC00002,RC00078
KEGG koko:K00889,ko:K00921
KEGG ReactionR03469,R05802,R10951
KEGG Pathwayko00562,ko01100,ko04011,ko04070,ko04072,ko04139,ko04144,ko04145,ko04666,ko04810,ko05231,map00562,map01100,map04011,map04070,map04072,map04139,map04144,map04145,map04666,map04810,map05231
KEGG ModuleM00130
Hectar predicted targeting categoryother localisation
GOsGO:0000139,GO:0000166,GO:0000285,GO:0000322,GO:0000323,GO:0000324,GO:0000329,GO:0000749,GO:0000750,GO:0003674,GO:0003824,GO:0005488,GO:0005524,GO:0005543,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0005768,GO:0005769,GO:0005770,GO:0005773,GO:0005774,GO:0005794,GO:0005829,GO:0005911,GO:0005942,GO:0006464,GO:0006629,GO:0006644,GO:0006650,GO:0006661,GO:0006793,GO:0006796,GO:0006807,GO:0006810,GO:0006914,GO:0007034,GO:0007041,GO:0007154,GO:0007165,GO:0007186,GO:0007272,GO:0007275,GO:0007399,GO:0008104,GO:0008144,GO:0008150,GO:0008152,GO:0008270,GO:0008289,GO:0008333,GO:0008366,GO:0008610,GO:0008654,GO:0009056,GO:0009058,GO:0009653,GO:0009894,GO:0009987,GO:0010008,GO:0010033,GO:0010506,GO:0010927,GO:0012505,GO:0012506,GO:0016020,GO:0016043,GO:0016192,GO:0016197,GO:0016236,GO:0016241,GO:0016301,GO:0016307,GO:0016308,GO:0016310,GO:0016311,GO:0016482,GO:0016740,GO:0016772,GO:0016773,GO:0016787,GO:0016788,GO:0016791,GO:0017076,GO:0019222,GO:0019236,GO:0019538,GO:0019637,GO:0019898,GO:0022411,GO:0022607,GO:0023052,GO:0030054,GO:0030258,GO:0030424,GO:0030554,GO:0031090,GO:0031136,GO:0031137,GO:0031139,GO:0031323,GO:0031329,GO:0031410,GO:0031901,GO:0031902,GO:0031982,GO:0031984,GO:0032005,GO:0032266,GO:0032288,GO:0032501,GO:0032502,GO:0032553,GO:0032555,GO:0032559,GO:0032984,GO:0032989,GO:0032991,GO:0033036,GO:0033043,GO:0033365,GO:0034504,GO:0034593,GO:0034595,GO:0034613,GO:0035032,GO:0035091,GO:0035556,GO:0035639,GO:0036092,GO:0036094,GO:0036211,GO:0036477,GO:0042147,GO:0042221,GO:0042552,GO:0042578,GO:0042995,GO:0043005,GO:0043025,GO:0043167,GO:0043168,GO:0043169,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043412,GO:0043813,GO:0043900,GO:0043902,GO:0043933,GO:0044085,GO:0044087,GO:0044088,GO:0044237,GO:0044238,GO:0044248,GO:0044249,GO:0044255,GO:0044260,GO:0044267,GO:0044297,GO:0044422,GO:0044424,GO:0044425,GO:0044431,GO:0044433,GO:0044437,GO:0044440,GO:0044444,GO:0044446,GO:0044464,GO:0045017,GO:0045121,GO:0046474,GO:0046486,GO:0046488,GO:0046834,GO:0046854,GO:0046872,GO:0046907,GO:0046914,GO:0046999,GO:0048471,GO:0048518,GO:0048522,GO:0048646,GO:0048731,GO:0048856,GO:0048869,GO:0050789,GO:0050794,GO:0050896,GO:0051128,GO:0051179,GO:0051234,GO:0051641,GO:0051649,GO:0051716,GO:0052742,GO:0052810,GO:0052866,GO:0061695,GO:0061919,GO:0065007,GO:0070647,GO:0070727,GO:0070772,GO:0070887,GO:0071310,GO:0071444,GO:0071704,GO:0071840,GO:0090407,GO:0097159,GO:0097352,GO:0097367,GO:0097458,GO:0097708,GO:0098588,GO:0098589,GO:0098791,GO:0098796,GO:0098805,GO:0098852,GO:0098857,GO:0106018,GO:0120025,GO:1901265,GO:1901363,GO:1901564,GO:1901576,GO:1901981,GO:1902115,GO:1902494,GO:1904562,GO:1990234,GO:2000241,GO:2000243,GO:2000785
EggNOG free text desc.Translation initiation factor IF-2, N-terminal region
EggNOG OGs3X8R5@554915,COG5253@1,KOG0230@2759
EC2.7.1.150,2.7.1.68
COG Functional cat.T
Best tax levelAmoebozoa
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000,ko04131
Exons1
Model size402
Cds size402
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815695.889455-CDS-M-pyrifera_M_contig117806:144..5461622815695.889455-CDS-M-pyrifera_M_contig117806:144..546Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig117806 145..546 +
1692277526.036393-CDS-M-pyrifera_M_contig117806:144..5461692277526.036393-CDS-M-pyrifera_M_contig117806:144..546Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig117806 145..546 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig117806.3681.1prot_M-pyrifera_M_contig117806.3681.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig117806 145..546 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig117806.3681.1

>prot_M-pyrifera_M_contig117806.3681.1 ID=prot_M-pyrifera_M_contig117806.3681.1|Name=mRNA_M-pyrifera_M_contig117806.3681.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=134bp
PALFKFSPLARPTLFNQQHILYPHSLVCRETGKQCVPYSLHRIQFYTHTD
LTLQAFLLMHCFRNAACACCGGEYGILEHERAILPHHFRMNIHVEPAMPE
LRDRLGSSGRAILHWSYCAECQRASPVATLSDEA
back to top

mRNA from alignment at M-pyrifera_M_contig117806:145..546+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig117806.3681.1 ID=mRNA_M-pyrifera_M_contig117806.3681.1|Name=mRNA_M-pyrifera_M_contig117806.3681.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=402bp|location=Sequence derived from alignment at M-pyrifera_M_contig117806:145..546+ (Macrocystis pyrifera P11B4 male)
CCAGCGCTCTTCAAGTTCTCACCGCTGGCCAGGCCCACGCTCTTCAACCA
GCAGCACATCCTCTATCCACACAGCCTTGTGTGTAGGGAGACAGGCAAGC
AGTGTGTACCCTACTCGCTCCACCGCATCCAGTTCTACACTCACACCGAC
CTCACCCTCCAGGCATTTCTTCTCATGCACTGCTTCAGAAACGCAGCCTG
CGCTTGCTGCGGGGGAGAGTACGGTATTCTCGAGCACGAGCGAGCGATCC
TCCCCCACCACTTCCGCATGAACATCCACGTCGAGCCAGCCATGCCAGAG
CTCCGTGACAGACTCGGCTCCAGCGGCAGAGCAATCCTCCACTGGAGCTA
TTGTGCTGAGTGCCAGAGGGCCTCGCCTGTGGCCACCCTCTCTGACGAGG
CA
back to top

Coding sequence (CDS) from alignment at M-pyrifera_M_contig117806:145..546+

>mRNA_M-pyrifera_M_contig117806.3681.1 ID=mRNA_M-pyrifera_M_contig117806.3681.1|Name=mRNA_M-pyrifera_M_contig117806.3681.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=804bp|location=Sequence derived from alignment at M-pyrifera_M_contig117806:145..546+ (Macrocystis pyrifera P11B4 male)
CCAGCGCTCTTCAAGTTCTCACCGCTGGCCAGGCCCACGCTCTTCAACCA
GCAGCACATCCTCTATCCACACAGCCTTGTGTGTAGGGAGACAGGCAAGC
AGTGTGTACCCTACTCGCTCCACCGCATCCAGTTCTACACTCACACCGAC
CTCACCCTCCAGGCATTTCTTCTCATGCACTGCTTCAGAAACGCAGCCTG
CGCTTGCTGCGGGGGAGAGTACGGTATTCTCGAGCACGAGCGAGCGATCC
TCCCCCACCACTTCCGCATGAACATCCACGTCGAGCCAGCCATGCCAGAG
CTCCGTGACAGACTCGGCTCCAGCGGCAGAGCAATCCTCCACTGGAGCTA
TTGTGCTGAGTGCCAGAGGGCCTCGCCTGTGGCCACCCTCTCTGACGAGG
CACCAGCGCTCTTCAAGTTCTCACCGCTGGCCAGGCCCACGCTCTTCAAC
CAGCAGCACATCCTCTATCCACACAGCCTTGTGTGTAGGGAGACAGGCAA
GCAGTGTGTACCCTACTCGCTCCACCGCATCCAGTTCTACACTCACACCG
ACCTCACCCTCCAGGCATTTCTTCTCATGCACTGCTTCAGAAACGCAGCC
TGCGCTTGCTGCGGGGGAGAGTACGGTATTCTCGAGCACGAGCGAGCGAT
CCTCCCCCACCACTTCCGCATGAACATCCACGTCGAGCCAGCCATGCCAG
AGCTCCGTGACAGACTCGGCTCCAGCGGCAGAGCAATCCTCCACTGGAGC
TATTGTGCTGAGTGCCAGAGGGCCTCGCCTGTGGCCACCCTCTCTGACGA
GGCA
back to top