mRNA_M-pyrifera_M_contig117803.3680.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig117803.3680.1
Unique NamemRNA_M-pyrifera_M_contig117803.3680.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig117803.3680.1 vs. uniprot
Match: A0A7K4VWH3_9EMBE (TPP1 peptidase (Fragment) n=2 Tax=Passeriformes TaxID=9126 RepID=A0A7K4VWH3_9EMBE)

HSP 1 Score: 71.6 bits (174), Expect = 5.650e-13
Identity = 41/117 (35.04%), Postives = 63/117 (53.85%), Query Frame = 1
Query:    1 RMQAILNAVSDPRSDAYGEYLTPEELASIIAPPEERLDEFLAWLGEQGIEQCSVVRTKDAVKCIAHESTLEQALDIKFSAFRCKFTDKVIMRSGAPWSLPAEWDDLVELVHGVTDFP 351
            R+  ++ AVSDP+S  YG+YL+ E+L  ++ P    L   L WL   G+E C  V T D ++C    ST E+ L       R     + ++RS  P+S+PAE  + ++ V G+  FP
Sbjct:   31 RLARLVQAVSDPQSPRYGQYLSLEQLRDLVQPSPATLMTVLKWLQGHGVEDCRSVTTLDFLECYLPASTAERLLP-GAEFHRYVQGQQSLVRSPLPYSVPAELAEHLDFVGGLHRFP 146          
BLAST of mRNA_M-pyrifera_M_contig117803.3680.1 vs. uniprot
Match: A0A8N5I4Z6_GEOFO (tripeptidyl-peptidase 1 n=1 Tax=Geospiza fortis TaxID=48883 RepID=A0A8N5I4Z6_GEOFO)

HSP 1 Score: 73.2 bits (178), Expect = 9.830e-13
Identity = 42/117 (35.90%), Postives = 63/117 (53.85%), Query Frame = 1
Query:    1 RMQAILNAVSDPRSDAYGEYLTPEELASIIAPPEERLDEFLAWLGEQGIEQCSVVRTKDAVKCIAHESTLEQALDIKFSAFRCKFTDKVIMRSGAPWSLPAEWDDLVELVHGVTDFP 351
            R+  ++ AVSDPRS  YG+YL+ E+L  ++ P    L   L WL   G+E C  V T D ++C    ST E+ L       R     + ++RS  P+S+PAE  + ++ V G+  FP
Sbjct:   18 RLARLVQAVSDPRSPRYGQYLSLEQLRDLVQPSPATLMTVLKWLQGHGVEDCRSVTTLDFLECYLPASTAERLLP-GAEFHRYVQGQQSLVRSPLPYSVPAELAEHLDFVGGLHRFP 133          
BLAST of mRNA_M-pyrifera_M_contig117803.3680.1 vs. uniprot
Match: A0A7K6BFQ9_UPUEP (Tripeptidyl-peptidase 1 (Fragment) n=2 Tax=Upupiformes TaxID=57389 RepID=A0A7K6BFQ9_UPUEP)

HSP 1 Score: 72.0 bits (175), Expect = 2.080e-12
Identity = 42/114 (36.84%), Postives = 65/114 (57.02%), Query Frame = 1
Query:   13 ILNAVSDPRSDAYGEYLTPEELASIIAPPEERLDEFLAWLGEQGIEQCSVVRTKDAVKCIAHESTLEQALD-IKFSAFRCKFTDKVIMRSGAPWSLPAEWDDLVELVHGVTDFP 351
            +++AVSDPRS  YG++L+ E+L  ++ PP   L   LAWL   G+EQC  V T D ++C     T E  L   +F  +  K    V+ RS  P+++P +  +L++ V G+  FP
Sbjct:   34 LVDAVSDPRSPQYGQFLSLEQLRDLVQPPPAALMAVLAWLQGHGVEQCHSVTTLDFLECHMPARTAESLLPGAEFHRY-VKGRSSVV-RSPLPYTVPTKLAELLDFVGGLHRFP 145          
BLAST of mRNA_M-pyrifera_M_contig117803.3680.1 vs. uniprot
Match: A0A7K5BPR3_MOTAL (Tripeptidyl-peptidase 1 (Fragment) n=48 Tax=Passeriformes TaxID=9126 RepID=A0A7K5BPR3_MOTAL)

HSP 1 Score: 70.5 bits (171), Expect = 7.230e-12
Identity = 41/113 (36.28%), Postives = 61/113 (53.98%), Query Frame = 1
Query:   13 ILNAVSDPRSDAYGEYLTPEELASIIAPPEERLDEFLAWLGEQGIEQCSVVRTKDAVKCIAHESTLEQALDIKFSAFRCKFTDKVIMRSGAPWSLPAEWDDLVELVHGVTDFP 351
            ++ AVSDPRS  YG+YL+ E+L  +I P    L   L WL   G+E+C  V T D ++C    ST E+ L       R       ++RS  P+++PAE  + ++ V G+  FP
Sbjct:   31 LVQAVSDPRSPRYGQYLSLEQLRDLIQPSPATLMTVLKWLQGHGVEECRSVTTLDFLECYLPASTAERLLP-GAQFHRYVQGQHSLVRSPLPYTVPAELAEHLDFVGGMHRFP 142          
BLAST of mRNA_M-pyrifera_M_contig117803.3680.1 vs. uniprot
Match: H0YQR9_TAEGU (Tripeptidyl-peptidase 1 n=31 Tax=Passeriformes TaxID=9126 RepID=H0YQR9_TAEGU)

HSP 1 Score: 70.5 bits (171), Expect = 8.920e-12
Identity = 40/117 (34.19%), Postives = 62/117 (52.99%), Query Frame = 1
Query:    1 RMQAILNAVSDPRSDAYGEYLTPEELASIIAPPEERLDEFLAWLGEQGIEQCSVVRTKDAVKCIAHESTLEQALDIKFSAFRCKFTDKVIMRSGAPWSLPAEWDDLVELVHGVTDFP 351
            R+  ++ AVSDPRS  YG+YL+ E++  ++ P    L   L WL   G+E C  V T D ++C    S  E+ L       R     + ++RS  P+S+PAE  + ++ V G+  FP
Sbjct:   66 RLVRLVQAVSDPRSPQYGQYLSLEQVRDLVQPSAATLMTVLKWLQGHGVEDCRSVTTLDFLECYLPASAAERLLP-GAEFHRYVQGQRSLLRSPLPYSVPAELAEHLDFVGGMHRFP 181          
BLAST of mRNA_M-pyrifera_M_contig117803.3680.1 vs. uniprot
Match: UPI0011C482E7 (tripeptidyl-peptidase 1 isoform X1 n=2 Tax=Calypte anna TaxID=9244 RepID=UPI0011C482E7)

HSP 1 Score: 70.5 bits (171), Expect = 8.970e-12
Identity = 43/118 (36.44%), Postives = 64/118 (54.24%), Query Frame = 1
Query:    1 RMQAILNAVSDPRSDAYGEYLTPEELASIIAPPEERLDEFLAWLGEQGIEQCSVVRTKDAVKCIAHESTLEQALD-IKFSAFRCKFTDKVIMRSGAPWSLPAEWDDLVELVHGVTDFP 351
            R+  I++AVSDPRS  YG+YL+ E++  ++ P    L   L WL   G+E C  V T+D V+C    ST E+ L   +F  F  K     + RS  P+++P E    ++ V G+  FP
Sbjct:   85 RLAQIVDAVSDPRSPRYGQYLSLEQVRDLVQPSPTTLLTVLKWLQGHGVENCQSVTTRDFVECHMPASTAERLLPGAEFHRF-VKGQQSTV-RSPRPYTVPDELAQHLDFVSGLHRFP 200          
BLAST of mRNA_M-pyrifera_M_contig117803.3680.1 vs. uniprot
Match: A0A7L0MPI9_9PSIT (Tripeptidyl-peptidase 1 (Fragment) n=1 Tax=Amazona guildingii TaxID=175529 RepID=A0A7L0MPI9_9PSIT)

HSP 1 Score: 70.1 bits (170), Expect = 1.020e-11
Identity = 41/118 (34.75%), Postives = 64/118 (54.24%), Query Frame = 1
Query:    1 RMQAILNAVSDPRSDAYGEYLTPEELASIIAPPEERLDEFLAWLGEQGIEQCSVVRTKDAVKCIAHESTLEQALD-IKFSAFRCKFTDKVIMRSGAPWSLPAEWDDLVELVHGVTDFP 351
            R+  ++ AVSDPRS  YG+YL+ E +  ++ P    L   L WL E G+E C  V T D ++C    ST E+ L   +F  +      + I+RS  P+++P E  + ++ V G+  FP
Sbjct:   31 RLARLVEAVSDPRSSRYGQYLSLERVRDLVQPSRATLMVVLKWLQEHGVETCRSVATLDFLECRMPASTAERILPGAEFHQY--VKGQQSIVRSPRPYAVPPELAEHLDFVGGLHRFP 146          
BLAST of mRNA_M-pyrifera_M_contig117803.3680.1 vs. uniprot
Match: A0A7K5MKE7_CARCD (Tripeptidyl-peptidase 1 (Fragment) n=2 Tax=Passeroidea TaxID=175121 RepID=A0A7K5MKE7_CARCD)

HSP 1 Score: 69.7 bits (169), Expect = 1.390e-11
Identity = 39/117 (33.33%), Postives = 63/117 (53.85%), Query Frame = 1
Query:    1 RMQAILNAVSDPRSDAYGEYLTPEELASIIAPPEERLDEFLAWLGEQGIEQCSVVRTKDAVKCIAHESTLEQALDIKFSAFRCKFTDKVIMRSGAPWSLPAEWDDLVELVHGVTDFP 351
            R+  ++ AVSDP+S  YG+Y++ E+L  ++ P    L   L WL   G+E C  V T D ++C    ST E+ L       R     + ++RS  P+++PAE  + ++ V G+  FP
Sbjct:   31 RLARLVQAVSDPQSPRYGQYMSLEQLRDLVQPSPATLMTVLKWLQGHGVEDCRSVATLDFLECYLPASTAERLLP-GAEFHRYVQGQQSLVRSPLPYTVPAELAEHLDFVGGLHRFP 146          
BLAST of mRNA_M-pyrifera_M_contig117803.3680.1 vs. uniprot
Match: A0A7K8PZA8_COCCO (Tripeptidyl-peptidase 1 (Fragment) n=9 Tax=Neognathae TaxID=8825 RepID=A0A7K8PZA8_COCCO)

HSP 1 Score: 69.7 bits (169), Expect = 1.400e-11
Identity = 39/117 (33.33%), Postives = 62/117 (52.99%), Query Frame = 1
Query:    1 RMQAILNAVSDPRSDAYGEYLTPEELASIIAPPEERLDEFLAWLGEQGIEQCSVVRTKDAVKCIAHESTLEQALDIKFSAFRCKFTDKVIMRSGAPWSLPAEWDDLVELVHGVTDFP 351
            R+  +++AVSDPRS  YG+YL+ E++  ++ P    L + L WL   G+E C  + T D ++C    ST E  L       R     + ++RS  P+++P E    V+ V G+  FP
Sbjct:   31 RLARLVDAVSDPRSPRYGQYLSLEQVRDLVQPSPATLMQVLKWLQGHGVENCRSIVTLDFLECCMPASTAEHLLP-GAEFHRYVKGQRSVVRSPLPYAVPEELAGHVDFVGGLHRFP 146          
BLAST of mRNA_M-pyrifera_M_contig117803.3680.1 vs. uniprot
Match: A0A7K6FN03_9CORV (Tripeptidyl-peptidase 1 (Fragment) n=7 Tax=Passeriformes TaxID=9126 RepID=A0A7K6FN03_9CORV)

HSP 1 Score: 69.3 bits (168), Expect = 1.890e-11
Identity = 38/117 (32.48%), Postives = 63/117 (53.85%), Query Frame = 1
Query:    1 RMQAILNAVSDPRSDAYGEYLTPEELASIIAPPEERLDEFLAWLGEQGIEQCSVVRTKDAVKCIAHESTLEQALDIKFSAFRCKFTDKVIMRSGAPWSLPAEWDDLVELVHGVTDFP 351
            ++  ++ AVSDPRS  YG+YL+ E++  ++ P    L   L WL   G++ C  V T D ++C    ST E+ L       R     + ++RS  P+++PAE  + ++ V G+  FP
Sbjct:   31 QLARLVEAVSDPRSPRYGQYLSLEQVRDLVQPSPATLMTVLKWLQGHGVQDCRTVTTLDFLECYLPASTAERLLP-GAEFHRYVQGQRSLVRSPLPYTVPAELAEHLDFVGGMHRFP 146          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig117803.3680.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A7K4VWH3_9EMBE5.650e-1335.04TPP1 peptidase (Fragment) n=2 Tax=Passeriformes Ta... [more]
A0A8N5I4Z6_GEOFO9.830e-1335.90tripeptidyl-peptidase 1 n=1 Tax=Geospiza fortis Ta... [more]
A0A7K6BFQ9_UPUEP2.080e-1236.84Tripeptidyl-peptidase 1 (Fragment) n=2 Tax=Upupifo... [more]
A0A7K5BPR3_MOTAL7.230e-1236.28Tripeptidyl-peptidase 1 (Fragment) n=48 Tax=Passer... [more]
H0YQR9_TAEGU8.920e-1234.19Tripeptidyl-peptidase 1 n=31 Tax=Passeriformes Tax... [more]
UPI0011C482E78.970e-1236.44tripeptidyl-peptidase 1 isoform X1 n=2 Tax=Calypte... [more]
A0A7L0MPI9_9PSIT1.020e-1134.75Tripeptidyl-peptidase 1 (Fragment) n=1 Tax=Amazona... [more]
A0A7K5MKE7_CARCD1.390e-1133.33Tripeptidyl-peptidase 1 (Fragment) n=2 Tax=Passero... [more]
A0A7K8PZA8_COCCO1.400e-1133.33Tripeptidyl-peptidase 1 (Fragment) n=9 Tax=Neognat... [more]
A0A7K6FN03_9CORV1.890e-1132.48Tripeptidyl-peptidase 1 (Fragment) n=7 Tax=Passeri... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig117803contigM-pyrifera_M_contig117803:29..379 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score79.0
Seed ortholog evalue1.7e-12
Seed eggNOG ortholog529818.AMSG_00174T0
KEGG koko:K01279,ko:K20756
KEGG Pathwayko04142,map04142
Hectar predicted targeting categoryother localisation
EggNOG free text desc.tripeptidyl-peptidase activity
EggNOG OGs2QR6D@2759,COG4934@1
EC3.4.14.9,3.4.21.103
COG Functional cat.O
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko01002,ko03110,ko04147
Exons1
Model size351
Cds size348
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815695.8432827-UTR-M-pyrifera_M_contig117803:28..311622815695.8432827-UTR-M-pyrifera_M_contig117803:28..31Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig117803 29..31 +
1692277526.0062857-UTR-M-pyrifera_M_contig117803:28..311692277526.0062857-UTR-M-pyrifera_M_contig117803:28..31Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig117803 29..31 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815695.858467-CDS-M-pyrifera_M_contig117803:31..3791622815695.858467-CDS-M-pyrifera_M_contig117803:31..379Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig117803 32..379 +
1692277526.025665-CDS-M-pyrifera_M_contig117803:31..3791692277526.025665-CDS-M-pyrifera_M_contig117803:31..379Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig117803 32..379 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig117803.3680.1prot_M-pyrifera_M_contig117803.3680.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig117803 32..379 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig117803.3680.1

>prot_M-pyrifera_M_contig117803.3680.1 ID=prot_M-pyrifera_M_contig117803.3680.1|Name=mRNA_M-pyrifera_M_contig117803.3680.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=116bp
MQAILNAVSDPRSDAYGEYLTPEELASIIAPPEERLDEFLAWLGEQGIEQ
CSVVRTKDAVKCIAHESTLEQALDIKFSAFRCKFTDKVIMRSGAPWSLPA
EWDDLVELVHGVTDFP
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mRNA from alignment at M-pyrifera_M_contig117803:29..379+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig117803.3680.1 ID=mRNA_M-pyrifera_M_contig117803.3680.1|Name=mRNA_M-pyrifera_M_contig117803.3680.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=351bp|location=Sequence derived from alignment at M-pyrifera_M_contig117803:29..379+ (Macrocystis pyrifera P11B4 male)
CGGATGCAGGCCATCCTTAACGCAGTGAGCGACCCTAGATCCGATGCCTA TGGCGAGTATCTCACTCCCGAAGAGCTTGCCAGCATCATTGCTCCTCCTG AGGAGCGTCTGGATGAGTTTCTGGCTTGGCTTGGCGAGCAGGGCATCGAG CAATGCAGCGTGGTCCGCACAAAGGACGCAGTCAAGTGCATTGCCCATGA GAGCACTCTCGAGCAGGCACTGGACATCAAGTTCAGCGCTTTCAGGTGCA AGTTCACTGACAAGGTCATCATGCGCAGCGGTGCTCCTTGGAGCCTCCCC GCCGAGTGGGACGACCTCGTCGAGCTCGTCCACGGCGTCACCGATTTCCC T
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig117803:29..379+

>mRNA_M-pyrifera_M_contig117803.3680.1 ID=mRNA_M-pyrifera_M_contig117803.3680.1|Name=mRNA_M-pyrifera_M_contig117803.3680.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=696bp|location=Sequence derived from alignment at M-pyrifera_M_contig117803:29..379+ (Macrocystis pyrifera P11B4 male)
ATGCAGGCCATCCTTAACGCAGTGAGCGACCCTAGATCCGATGCCTATGG
CGAGTATCTCACTCCCGAAGAGCTTGCCAGCATCATTGCTCCTCCTGAGG
AGCGTCTGGATGAGTTTCTGGCTTGGCTTGGCGAGCAGGGCATCGAGCAA
TGCAGCGTGGTCCGCACAAAGGACGCAGTCAAGTGCATTGCCCATGAGAG
CACTCTCGAGCAGGCACTGGACATCAAGTTCAGCGCTTTCAGGTGCAAGT
TCACTGACAAGGTCATCATGCGCAGCGGTGCTCCTTGGAGCCTCCCCGCC
GAGTGGGACGACCTCGTCGAGCTCGTCCACGGCGTCACCGATTTCCCTAT
GCAGGCCATCCTTAACGCAGTGAGCGACCCTAGATCCGATGCCTATGGCG
AGTATCTCACTCCCGAAGAGCTTGCCAGCATCATTGCTCCTCCTGAGGAG
CGTCTGGATGAGTTTCTGGCTTGGCTTGGCGAGCAGGGCATCGAGCAATG
CAGCGTGGTCCGCACAAAGGACGCAGTCAAGTGCATTGCCCATGAGAGCA
CTCTCGAGCAGGCACTGGACATCAAGTTCAGCGCTTTCAGGTGCAAGTTC
ACTGACAAGGTCATCATGCGCAGCGGTGCTCCTTGGAGCCTCCCCGCCGA
GTGGGACGACCTCGTCGAGCTCGTCCACGGCGTCACCGATTTCCCT
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