mRNA_M-pyrifera_M_contig117795.3673.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig117795.3673.1
Unique NamemRNA_M-pyrifera_M_contig117795.3673.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig117795.3673.1 vs. uniprot
Match: Q4TGV9_TETNG ((spotted green pufferfish) hypothetical protein (Fragment) n=1 Tax=Tetraodon nigroviridis TaxID=99883 RepID=Q4TGV9_TETNG)

HSP 1 Score: 157 bits (397), Expect = 6.690e-46
Identity = 78/106 (73.58%), Postives = 93/106 (87.74%), Query Frame = 1 
Query:   10 AVADAIRTSLGPRGMDKMIQDEKGEVIITNDGATIMAQMKVYHPTAKMLVELSKAQDVSAGDGTTSVVVLAGSLLNSCLFLLQKGLHPMTTAASFQKAALEGAKGL 327
            AVADA+RTSLGP+GMDKMIQDEKG+V ITNDGATI+ QM+V HP+AKMLVELSKAQD+ AGDGTTSVVV+AG+LL+SC  LLQ+G+HP T + SFQKA  +G + L
Sbjct:   40 AVADAVRTSLGPKGMDKMIQDEKGDVTITNDGATILKQMQVLHPSAKMLVELSKAQDIEAGDGTTSVVVIAGALLDSCNRLLQRGIHPTTISESFQKAVDKGVEVL 145
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BLAST of mRNA_M-pyrifera_M_contig117795.3673.1 vs. uniprot
Match: UPI001C4CC077 (T-complex protein 1 subunit delta-like n=1 Tax=Plectropomus leopardus TaxID=160734 RepID=UPI001C4CC077)

HSP 1 Score: 155 bits (392), Expect = 1.040e-45
Identity = 78/106 (73.58%), Postives = 91/106 (85.85%), Query Frame = 1 
Query:   10 AVADAIRTSLGPRGMDKMIQDEKGEVIITNDGATIMAQMKVYHPTAKMLVELSKAQDVSAGDGTTSVVVLAGSLLNSCLFLLQKGLHPMTTAASFQKAALEGAKGL 327
            AVADAIRTSLGP+GMDKMIQDEKG+V ITNDGATI+ QM+V HP AKMLVELSKAQD+ AGDGTTSVVV+AG+LL++C  LLQKG+HP   + SFQKA  +G + L
Sbjct:   40 AVADAIRTSLGPKGMDKMIQDEKGDVTITNDGATILKQMQVLHPAAKMLVELSKAQDIEAGDGTTSVVVIAGALLDACSKLLQKGIHPTIISESFQKAVDKGVEVL 145
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BLAST of mRNA_M-pyrifera_M_contig117795.3673.1 vs. uniprot
Match: UPI001261A64A (T-complex protein 1 subunit delta n=1 Tax=Mastomys coucha TaxID=35658 RepID=UPI001261A64A)

HSP 1 Score: 153 bits (387), Expect = 4.700e-45
Identity = 76/102 (74.51%), Postives = 88/102 (86.27%), Query Frame = 1 
Query:   10 AVADAIRTSLGPRGMDKMIQDEKGEVIITNDGATIMAQMKVYHPTAKMLVELSKAQDVSAGDGTTSVVVLAGSLLNSCLFLLQKGLHPMTTAASFQKAALEG 315
            AVADAIRTSLGP+GMDKMIQD KG+V ITNDGATI+ QM+V HP A+MLVELSKAQD+ AGDGTTSVV++AGSLL+SC  LLQKG+HP   + SFQKA  +G
Sbjct:   43 AVADAIRTSLGPKGMDKMIQDGKGDVTITNDGATILKQMQVLHPAARMLVELSKAQDIEAGDGTTSVVIIAGSLLDSCTKLLQKGIHPTIISESFQKALEKG 144
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BLAST of mRNA_M-pyrifera_M_contig117795.3673.1 vs. uniprot
Match: A0A7J5YVE0_DISMA (Uncharacterized protein n=1 Tax=Dissostichus mawsoni TaxID=36200 RepID=A0A7J5YVE0_DISMA)

HSP 1 Score: 156 bits (394), Expect = 1.360e-44
Identity = 77/106 (72.64%), Postives = 91/106 (85.85%), Query Frame = 1 
Query:   10 AVADAIRTSLGPRGMDKMIQDEKGEVIITNDGATIMAQMKVYHPTAKMLVELSKAQDVSAGDGTTSVVVLAGSLLNSCLFLLQKGLHPMTTAASFQKAALEGAKGL 327
            AVADA+RTSLGP+GMDKMIQDEKG+V ITNDGATI+ QM+V HP AKMLVELSKAQD+ AGDGTTSVVV+AG+LL +C  LLQ+G+HP T + SFQKA  +G + L
Sbjct:   40 AVADAVRTSLGPKGMDKMIQDEKGDVTITNDGATILKQMQVLHPAAKMLVELSKAQDIEAGDGTTSVVVIAGALLEACSKLLQRGIHPTTISESFQKAVEKGVEVL 145
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BLAST of mRNA_M-pyrifera_M_contig117795.3673.1 vs. uniprot
Match: UPI001C351A14 ((large yellow croaker) hypothetical protein n=1 Tax=Larimichthys crocea TaxID=215358 RepID=UPI001C351A14)

HSP 1 Score: 155 bits (393), Expect = 1.580e-44
Identity = 77/106 (72.64%), Postives = 91/106 (85.85%), Query Frame = 1 
Query:   10 AVADAIRTSLGPRGMDKMIQDEKGEVIITNDGATIMAQMKVYHPTAKMLVELSKAQDVSAGDGTTSVVVLAGSLLNSCLFLLQKGLHPMTTAASFQKAALEGAKGL 327
            AVADA+RTSLGP+GMDKMIQDEKG+V ITNDGATI+ QM+V HP AKMLVELSKAQD+ AGDGTTSVVV+AG+LL++C  LLQKG+HP   + SFQKA  +G + L
Sbjct:   59 AVADAVRTSLGPKGMDKMIQDEKGDVTITNDGATILKQMQVLHPAAKMLVELSKAQDIEAGDGTTSVVVIAGALLDACYKLLQKGIHPTIISESFQKAVEKGVEVL 164
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BLAST of mRNA_M-pyrifera_M_contig117795.3673.1 vs. uniprot
Match: Q5ZMG3_CHICK (Uncharacterized protein (Fragment) n=1 Tax=Gallus gallus TaxID=9031 RepID=Q5ZMG3_CHICK)

HSP 1 Score: 152 bits (385), Expect = 1.880e-44
Identity = 76/102 (74.51%), Postives = 88/102 (86.27%), Query Frame = 1 
Query:   10 AVADAIRTSLGPRGMDKMIQDEKGEVIITNDGATIMAQMKVYHPTAKMLVELSKAQDVSAGDGTTSVVVLAGSLLNSCLFLLQKGLHPMTTAASFQKAALEG 315
            AVADAIRTSLGP+GMDKMIQD KG+V ITNDGATI+ QM+V HP AKMLVELSKAQD+ AGDGTTSVVV+AG+LL++C  LLQKG+HP   + SFQKA  +G
Sbjct:   40 AVADAIRTSLGPKGMDKMIQDAKGDVTITNDGATILKQMQVLHPAAKMLVELSKAQDIEAGDGTTSVVVIAGALLDACSRLLQKGIHPTIISESFQKALEKG 141
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BLAST of mRNA_M-pyrifera_M_contig117795.3673.1 vs. uniprot
Match: A0A3P7M319_CYLGO (Uncharacterized protein (Fragment) n=1 Tax=Cylicostephanus goldi TaxID=71465 RepID=A0A3P7M319_CYLGO)

HSP 1 Score: 150 bits (379), Expect = 2.620e-44
Identity = 76/104 (73.08%), Postives = 87/104 (83.65%), Query Frame = 1 
Query:   10 AVADAIRTSLGPRGMDKMIQDEKGEVIITNDGATIMAQMKVYHPTAKMLVELSKAQDVSAGDGTTSVVVLAGSLLNSCLFLLQKGLHPMTTAASFQKAALEGAK 321
            AVADA+RTSLGPRGMDKMIQ   G+V ITNDGATI+ QM V HPTAKMLVELSKAQD+ AGDGTT+VVV+AG+LL++   LLQKG+HP T + SFQ AALE  K
Sbjct:   37 AVADAVRTSLGPRGMDKMIQSGNGDVTITNDGATILNQMSVVHPTAKMLVELSKAQDIEAGDGTTTVVVIAGALLDAAQTLLQKGIHPTTISDSFQAAALEAEK 140
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BLAST of mRNA_M-pyrifera_M_contig117795.3673.1 vs. uniprot
Match: A0A3Q3NCR6_9TELE (T-complex protein 1 subunit delta n=7 Tax=Clupeocephala TaxID=186625 RepID=A0A3Q3NCR6_9TELE)

HSP 1 Score: 159 bits (402), Expect = 3.970e-44
Identity = 80/106 (75.47%), Postives = 92/106 (86.79%), Query Frame = 1 
Query:   10 AVADAIRTSLGPRGMDKMIQDEKGEVIITNDGATIMAQMKVYHPTAKMLVELSKAQDVSAGDGTTSVVVLAGSLLNSCLFLLQKGLHPMTTAASFQKAALEGAKGL 327
            AVADAIRTSLGP+GMDKMIQDEKG+V ITNDGATI+ QM+V HP AKMLVELSKAQD+ AGDGTTSVVV+AG+LL+SC  LLQKG+HP T + SFQKA  +G + L
Sbjct:   40 AVADAIRTSLGPKGMDKMIQDEKGDVTITNDGATILKQMQVLHPAAKMLVELSKAQDIEAGDGTTSVVVIAGALLDSCSRLLQKGIHPTTISESFQKAVEKGVEVL 145
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BLAST of mRNA_M-pyrifera_M_contig117795.3673.1 vs. uniprot
Match: A0A162EZD3_9CRUS (T-complex protein 1 subunit delta (Fragment) n=1 Tax=Daphnia magna TaxID=35525 RepID=A0A162EZD3_9CRUS)

HSP 1 Score: 148 bits (374), Expect = 5.670e-44
Identity = 76/104 (73.08%), Postives = 86/104 (82.69%), Query Frame = 1 
Query:    1 MCAAVADAIRTSLGPRGMDKMIQDEKGEVIITNDGATIMAQMKVYHPTAKMLVELSKAQDVSAGDGTTSVVVLAGSLLNSCLFLLQKGLHPMTTAASFQKAALE 312
            M  AVADAIRTSLGPRGMDKMIQ  KG+V ITNDGATI+ QMK+ HP AKMLVELSKAQDV AGDGTTSVVVLAGS L +   LL+KG+HP   + SFQKA+++
Sbjct:   13 MNVAVADAIRTSLGPRGMDKMIQSGKGDVTITNDGATILKQMKLVHPAAKMLVELSKAQDVEAGDGTTSVVVLAGSFLEAAQKLLEKGIHPTVISESFQKASVK 116
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BLAST of mRNA_M-pyrifera_M_contig117795.3673.1 vs. uniprot
Match: Q5C3H9_SCHJA (SJCHGC09255 protein (Fragment) n=1 Tax=Schistosoma japonicum TaxID=6182 RepID=Q5C3H9_SCHJA)

HSP 1 Score: 153 bits (386), Expect = 1.030e-43
Identity = 76/101 (75.25%), Postives = 89/101 (88.12%), Query Frame = 1 
Query:   10 AVADAIRTSLGPRGMDKMIQDEKGEVIITNDGATIMAQMKVYHPTAKMLVELSKAQDVSAGDGTTSVVVLAGSLLNSCLFLLQKGLHPMTTAASFQKAALE 312
            AVADAIRTSLGP+GMDKMIQ+ KG+V ITNDGATI+ QMK+ HP AKMLVELSKAQD+ AGDGTTSVVVLAGSLL++C  LL KG+HP + + +FQKAAL+
Sbjct:   54 AVADAIRTSLGPKGMDKMIQEAKGDVTITNDGATILKQMKLLHPAAKMLVELSKAQDIEAGDGTTSVVVLAGSLLDACSKLLDKGIHPTSISDAFQKAALK 154
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig117795.3673.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
Q4TGV9_TETNG6.690e-4673.58(spotted green pufferfish) hypothetical protein (F... [more]
UPI001C4CC0771.040e-4573.58T-complex protein 1 subunit delta-like n=1 Tax=Ple... [more]
UPI001261A64A4.700e-4574.51T-complex protein 1 subunit delta n=1 Tax=Mastomys... [more]
A0A7J5YVE0_DISMA1.360e-4472.64Uncharacterized protein n=1 Tax=Dissostichus mawso... [more]
UPI001C351A141.580e-4472.64(large yellow croaker) hypothetical protein n=1 Ta... [more]
Q5ZMG3_CHICK1.880e-4474.51Uncharacterized protein (Fragment) n=1 Tax=Gallus ... [more]
A0A3P7M319_CYLGO2.620e-4473.08Uncharacterized protein (Fragment) n=1 Tax=Cylicos... [more]
A0A3Q3NCR6_9TELE3.970e-4475.47T-complex protein 1 subunit delta n=7 Tax=Clupeoce... [more]
A0A162EZD3_9CRUS5.670e-4473.08T-complex protein 1 subunit delta (Fragment) n=1 T... [more]
Q5C3H9_SCHJA1.030e-4375.25SJCHGC09255 protein (Fragment) n=1 Tax=Schistosoma... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig117795contigM-pyrifera_M_contig117795:223..549 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeMetazoa
Seed ortholog score156.4
Seed ortholog evalue7.7e-36
Seed eggNOG ortholog215358.XP_010728596.1
Preferred nameCCT4
KEGG koko:K09496
Hectar predicted targeting categoryother localisation
GOsGO:0000003,GO:0002199,GO:0003674,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005737,GO:0005813,GO:0005815,GO:0005829,GO:0005832,GO:0005856,GO:0005874,GO:0006403,GO:0006457,GO:0006458,GO:0006810,GO:0007275,GO:0007338,GO:0007339,GO:0008037,GO:0008150,GO:0009566,GO:0009653,GO:0009791,GO:0009886,GO:0009889,GO:0009891,GO:0009893,GO:0009987,GO:0009988,GO:0010171,GO:0010556,GO:0010557,GO:0010604,GO:0010638,GO:0015630,GO:0019219,GO:0019222,GO:0019953,GO:0022414,GO:0031323,GO:0031325,GO:0031326,GO:0031328,GO:0031647,GO:0031974,GO:0031981,GO:0032204,GO:0032206,GO:0032210,GO:0032212,GO:0032501,GO:0032502,GO:0032879,GO:0032880,GO:0032991,GO:0033036,GO:0033043,GO:0033044,GO:0035036,GO:0040032,GO:0043085,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0044093,GO:0044183,GO:0044297,GO:0044422,GO:0044424,GO:0044428,GO:0044430,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:0044703,GO:0045935,GO:0048518,GO:0048522,GO:0048856,GO:0050789,GO:0050790,GO:0050794,GO:0050821,GO:0051052,GO:0051054,GO:0051082,GO:0051128,GO:0051130,GO:0051171,GO:0051173,GO:0051179,GO:0051234,GO:0051338,GO:0051347,GO:0051704,GO:0051972,GO:0051973,GO:0060255,GO:0060341,GO:0061077,GO:0065007,GO:0065008,GO:0065009,GO:0070013,GO:0070201,GO:0070202,GO:0070203,GO:0080090,GO:0090666,GO:0090670,GO:0090685,GO:0099080,GO:0099081,GO:0099512,GO:0099513,GO:0101031,GO:1901998,GO:1903827,GO:1903829,GO:1904356,GO:1904358,GO:1904814,GO:1904816,GO:1904851,GO:1904872,GO:1904874,GO:1904951,GO:2000112,GO:2000278,GO:2000573,GO:2001252
EggNOG free text desc.assists the folding of proteins upon ATP hydrolysis
EggNOG OGs39NW1@33154,3BCK9@33208,3CVW1@33213,47ZFR@7711,4981V@7742,49YKC@7898,COG0459@1,KOG0358@2759
COG Functional cat.O
Best tax levelActinopterygii
Best eggNOG OGNA|NA|NA
BRITEko00000,ko03036,ko03110,ko04147
Exons1
Model size327
Cds size327
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815695.383359-CDS-M-pyrifera_M_contig117795:222..5491622815695.383359-CDS-M-pyrifera_M_contig117795:222..549Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig117795 223..549 +
1692277525.7056277-CDS-M-pyrifera_M_contig117795:222..5491692277525.7056277-CDS-M-pyrifera_M_contig117795:222..549Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig117795 223..549 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig117795.3673.1prot_M-pyrifera_M_contig117795.3673.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig117795 223..549 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig117795.3673.1

>prot_M-pyrifera_M_contig117795.3673.1 ID=prot_M-pyrifera_M_contig117795.3673.1|Name=mRNA_M-pyrifera_M_contig117795.3673.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=109bp
MCAAVADAIRTSLGPRGMDKMIQDEKGEVIITNDGATIMAQMKVYHPTAK
MLVELSKAQDVSAGDGTTSVVVLAGSLLNSCLFLLQKGLHPMTTAASFQK
AALEGAKGL
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mRNA from alignment at M-pyrifera_M_contig117795:223..549+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig117795.3673.1 ID=mRNA_M-pyrifera_M_contig117795.3673.1|Name=mRNA_M-pyrifera_M_contig117795.3673.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=327bp|location=Sequence derived from alignment at M-pyrifera_M_contig117795:223..549+ (Macrocystis pyrifera P11B4 male)
ATGTGTGCAGCTGTTGCGGACGCGATCCGCACGTCCCTGGGCCCGCGTGG
CATGGACAAGATGATTCAGGACGAGAAGGGTGAGGTGATCATCACGAACG
ACGGCGCAACGATCATGGCGCAGATGAAGGTGTACCACCCGACGGCGAAG
ATGCTGGTGGAGCTGTCCAAGGCGCAGGACGTGTCTGCTGGTGACGGCAC
CACTTCCGTCGTCGTCCTCGCCGGCTCTCTGCTCAACTCCTGCCTGTTCC
TGCTGCAGAAGGGCCTGCACCCGATGACCACCGCCGCCTCGTTCCAGAAG
GCCGCGCTGGAGGGCGCAAAGGGGCTG
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig117795:223..549+

>mRNA_M-pyrifera_M_contig117795.3673.1 ID=mRNA_M-pyrifera_M_contig117795.3673.1|Name=mRNA_M-pyrifera_M_contig117795.3673.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=654bp|location=Sequence derived from alignment at M-pyrifera_M_contig117795:223..549+ (Macrocystis pyrifera P11B4 male)
ATGTGTGCAGCTGTTGCGGACGCGATCCGCACGTCCCTGGGCCCGCGTGG
CATGGACAAGATGATTCAGGACGAGAAGGGTGAGGTGATCATCACGAACG
ACGGCGCAACGATCATGGCGCAGATGAAGGTGTACCACCCGACGGCGAAG
ATGCTGGTGGAGCTGTCCAAGGCGCAGGACGTGTCTGCTGGTGACGGCAC
CACTTCCGTCGTCGTCCTCGCCGGCTCTCTGCTCAACTCCTGCCTGTTCC
TGCTGCAGAAGGGCCTGCACCCGATGACCACCGCCGCCTCGTTCCAGAAG
GCCGCGCTGGAGGGCGCAAAGGGGCTGATGTGTGCAGCTGTTGCGGACGC
GATCCGCACGTCCCTGGGCCCGCGTGGCATGGACAAGATGATTCAGGACG
AGAAGGGTGAGGTGATCATCACGAACGACGGCGCAACGATCATGGCGCAG
ATGAAGGTGTACCACCCGACGGCGAAGATGCTGGTGGAGCTGTCCAAGGC
GCAGGACGTGTCTGCTGGTGACGGCACCACTTCCGTCGTCGTCCTCGCCG
GCTCTCTGCTCAACTCCTGCCTGTTCCTGCTGCAGAAGGGCCTGCACCCG
ATGACCACCGCCGCCTCGTTCCAGAAGGCCGCGCTGGAGGGCGCAAAGGG
GCTG
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