mRNA_M-pyrifera_M_contig117782.3670.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig117782.3670.1
Unique NamemRNA_M-pyrifera_M_contig117782.3670.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig117782.3670.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig117782contigM-pyrifera_M_contig117782:3..398 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score68.2
Seed ortholog evalue3.3e-09
Seed eggNOG ortholog65071.PYU1_T009940
Preferred nameBSCL2
KEGG koko:K02880,ko:K19365
KEGG Pathwayko03010,map03010
KEGG ModuleM00177
Hectar predicted targeting categoryother localisation
GOsGO:0000003,GO:0001558,GO:0003006,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005783,GO:0005789,GO:0006082,GO:0006629,GO:0006631,GO:0006635,GO:0006638,GO:0006639,GO:0006644,GO:0006650,GO:0006793,GO:0006796,GO:0006873,GO:0006874,GO:0006875,GO:0006950,GO:0006996,GO:0007275,GO:0007399,GO:0008150,GO:0008152,GO:0008361,GO:0008610,GO:0009056,GO:0009058,GO:0009062,GO:0009605,GO:0009791,GO:0009846,GO:0009856,GO:0009889,GO:0009892,GO:0009894,GO:0009895,GO:0009987,GO:0009991,GO:0010154,GO:0010162,GO:0010344,GO:0010431,GO:0010720,GO:0010769,GO:0010770,GO:0010876,GO:0010883,GO:0010884,GO:0010975,GO:0010976,GO:0012505,GO:0016020,GO:0016021,GO:0016042,GO:0016043,GO:0016054,GO:0019216,GO:0019222,GO:0019395,GO:0019637,GO:0019725,GO:0019752,GO:0019915,GO:0021700,GO:0022008,GO:0022414,GO:0022603,GO:0022604,GO:0022607,GO:0022611,GO:0030003,GO:0030154,GO:0030176,GO:0030258,GO:0030307,GO:0030516,GO:0031224,GO:0031227,GO:0031323,GO:0031344,GO:0031346,GO:0031667,GO:0031984,GO:0032101,GO:0032103,GO:0032469,GO:0032501,GO:0032502,GO:0032504,GO:0032535,GO:0032787,GO:0032879,GO:0033036,GO:0034389,GO:0034440,GO:0040008,GO:0042175,GO:0042592,GO:0042594,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043436,GO:0043900,GO:0044085,GO:0044237,GO:0044238,GO:0044242,GO:0044248,GO:0044255,GO:0044281,GO:0044282,GO:0044422,GO:0044424,GO:0044425,GO:0044432,GO:0044444,GO:0044446,GO:0044464,GO:0044706,GO:0045444,GO:0045595,GO:0045597,GO:0045664,GO:0045666,GO:0045773,GO:0045833,GO:0045927,GO:0046339,GO:0046395,GO:0046473,GO:0046486,GO:0046890,GO:0048316,GO:0048518,GO:0048519,GO:0048522,GO:0048583,GO:0048584,GO:0048608,GO:0048609,GO:0048638,GO:0048639,GO:0048679,GO:0048680,GO:0048686,GO:0048687,GO:0048690,GO:0048691,GO:0048699,GO:0048731,GO:0048856,GO:0048869,GO:0048878,GO:0050767,GO:0050769,GO:0050770,GO:0050772,GO:0050789,GO:0050793,GO:0050794,GO:0050801,GO:0050896,GO:0050994,GO:0050995,GO:0051094,GO:0051128,GO:0051130,GO:0051179,GO:0051235,GO:0051239,GO:0051240,GO:0051704,GO:0051960,GO:0051962,GO:0055065,GO:0055074,GO:0055080,GO:0055082,GO:0055114,GO:0060284,GO:0061387,GO:0061458,GO:0065007,GO:0065008,GO:0070570,GO:0070572,GO:0070925,GO:0071695,GO:0071704,GO:0071840,GO:0072329,GO:0072503,GO:0072507,GO:0080090,GO:0080134,GO:0080135,GO:0080154,GO:0080155,GO:0090066,GO:0090207,GO:0098771,GO:0098827,GO:0120035,GO:0140042,GO:1901575,GO:1901576,GO:1903034,GO:1903036,GO:1905952,GO:1905954,GO:2000026,GO:2000241
EggNOG free text desc.Source PGD
EggNOG OGs1MAMR@121069,KOG4200@1,KOG4200@2759
COG Functional cat.S
Best tax levelPythiales
Best eggNOG OGNA|NA|NA
BRITEbr01610,ko00000,ko00001,ko00002,ko03011
Exons1
Model size396
Cds size387
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815695.232293-UTR-M-pyrifera_M_contig117782:2..111622815695.232293-UTR-M-pyrifera_M_contig117782:2..11Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig117782 3..11 +
1692277525.6314957-UTR-M-pyrifera_M_contig117782:2..111692277525.6314957-UTR-M-pyrifera_M_contig117782:2..11Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig117782 3..11 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815695.2447367-CDS-M-pyrifera_M_contig117782:11..3981622815695.2447367-CDS-M-pyrifera_M_contig117782:11..398Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig117782 12..398 +
1692277525.6420333-CDS-M-pyrifera_M_contig117782:11..3981692277525.6420333-CDS-M-pyrifera_M_contig117782:11..398Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig117782 12..398 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig117782.3670.1prot_M-pyrifera_M_contig117782.3670.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig117782 12..398 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig117782.3670.1

>prot_M-pyrifera_M_contig117782.3670.1 ID=prot_M-pyrifera_M_contig117782.3670.1|Name=mRNA_M-pyrifera_M_contig117782.3670.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=129bp
MLHLTLSAPCGAPLATCSRPITISHTPTLVRLARLAALAPLHLLGLLSHT
QTHTLRCFDNYVESGAHPVARVNATLSHDAVRMHAAQVRLLLRLHGVRYY
MYAWPITCFFIWTVTATTVALAALLCTHA
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mRNA from alignment at M-pyrifera_M_contig117782:3..398+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig117782.3670.1 ID=mRNA_M-pyrifera_M_contig117782.3670.1|Name=mRNA_M-pyrifera_M_contig117782.3670.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=396bp|location=Sequence derived from alignment at M-pyrifera_M_contig117782:3..398+ (Macrocystis pyrifera P11B4 male)
GGCCCCCTCATGCTCCACCTGACGTTGTCCGCGCCCTGCGGCGCACCGCT
GGCCACCTGCTCCCGACCCATCACCATCTCACACACACCCACCCTGGTCC
GCCTCGCGCGACTTGCCGCGCTCGCCCCCCTCCACCTCCTCGGCCTGTTG
TCGCACACCCAGACGCACACGCTGCGCTGCTTCGACAACTACGTGGAGAG
CGGCGCGCACCCGGTGGCCCGCGTGAACGCCACCCTGTCGCACGACGCGG
TGCGCATGCACGCCGCACAGGTGCGTCTGCTGCTGCGCCTGCACGGCGTC
AGGTACTACATGTACGCCTGGCCGATCACCTGCTTCTTCATCTGGACCGT
CACCGCCACCACGGTTGCCTTGGCCGCGCTCCTGTGCACGCACGCG
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig117782:3..398+

>mRNA_M-pyrifera_M_contig117782.3670.1 ID=mRNA_M-pyrifera_M_contig117782.3670.1|Name=mRNA_M-pyrifera_M_contig117782.3670.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=774bp|location=Sequence derived from alignment at M-pyrifera_M_contig117782:3..398+ (Macrocystis pyrifera P11B4 male)
ATGCTCCACCTGACGTTGTCCGCGCCCTGCGGCGCACCGCTGGCCACCTG
CTCCCGACCCATCACCATCTCACACACACCCACCCTGGTCCGCCTCGCGC
GACTTGCCGCGCTCGCCCCCCTCCACCTCCTCGGCCTGTTGTCGCACACC
CAGACGCACACGCTGCGCTGCTTCGACAACTACGTGGAGAGCGGCGCGCA
CCCGGTGGCCCGCGTGAACGCCACCCTGTCGCACGACGCGGTGCGCATGC
ACGCCGCACAGGTGCGTCTGCTGCTGCGCCTGCACGGCGTCAGGTACTAC
ATGTACGCCTGGCCGATCACCTGCTTCTTCATCTGGACCGTCACCGCCAC
CACGGTTGCCTTGGCCGCGCTCCTGTGCACGCACGCGATGCTCCACCTGA
CGTTGTCCGCGCCCTGCGGCGCACCGCTGGCCACCTGCTCCCGACCCATC
ACCATCTCACACACACCCACCCTGGTCCGCCTCGCGCGACTTGCCGCGCT
CGCCCCCCTCCACCTCCTCGGCCTGTTGTCGCACACCCAGACGCACACGC
TGCGCTGCTTCGACAACTACGTGGAGAGCGGCGCGCACCCGGTGGCCCGC
GTGAACGCCACCCTGTCGCACGACGCGGTGCGCATGCACGCCGCACAGGT
GCGTCTGCTGCTGCGCCTGCACGGCGTCAGGTACTACATGTACGCCTGGC
CGATCACCTGCTTCTTCATCTGGACCGTCACCGCCACCACGGTTGCCTTG
GCCGCGCTCCTGTGCACGCACGCG
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