mRNA_M-pyrifera_M_contig117781.3669.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig117781.3669.1
Unique NamemRNA_M-pyrifera_M_contig117781.3669.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig117781.3669.1 vs. uniprot
Match: UPI000719C963 (chitinase domain-containing protein 1-like n=1 Tax=Priapulus caudatus TaxID=37621 RepID=UPI000719C963)

HSP 1 Score: 129 bits (324), Expect = 7.400e-33
Identity = 59/125 (47.20%), Postives = 86/125 (68.80%), Query Frame = 1
Query:   22 GRPAANAPLSWITQTVLKILPPSARTPENTRKLMLGMNFYGKDYSFAGANTVLGHDYLQVLEKFKPDMEWLDEEGEHKITYRKAGT-EHLLYYPSLLSIQKRLELAESLGVGLAIWELAQGLPYF 393
            G+P  N+PL W +Q V  + P  A +P   RK++LG+NFYG DYS +    ++G+ Y+++L K+KP +EW +   EH   YR  G+ EHL++YP+L S+Q+R+EL  SLG GL+IWE+ QGL YF
Sbjct:  331 GKPGPNSPLYWASQCVQSLCP-DAESPWR-RKILLGLNFYGNDYSSSQGEAIIGNRYIEILHKYKPKLEWEEASAEHYFRYRSEGSGEHLVFYPTLFSVQQRIELINSLGTGLSIWEIGQGLDYF 453          
BLAST of mRNA_M-pyrifera_M_contig117781.3669.1 vs. uniprot
Match: L8GGT8_ACACA (Chitinase domain containing protein 1, putative n=1 Tax=Acanthamoeba castellanii str. Neff TaxID=1257118 RepID=L8GGT8_ACACA)

HSP 1 Score: 125 bits (315), Expect = 1.060e-32
Identity = 59/125 (47.20%), Postives = 82/125 (65.60%), Query Frame = 1
Query:   25 RPAANAPLSWITQTVLKILPPSARTPENT--RKLMLGMNFYGKDYSFAGANTVLGHDYLQVLEKFKPDMEWLDEEGEHKITYRKAGTEHLLYYPSLLSIQKRLELAESLGVGLAIWELAQGLPYF 393
            RP   APLSW+TQ VL++LPP  RT  N    K+++G+NFYG    +  A  V+G  Y+++L  +KP + W     EH  TY+K   EH ++YP+L S+  +LELA SLGVG++IWE+ QGL YF
Sbjct:  176 RPGPTAPLSWVTQNVLRLLPPDHRTSGNQLGHKILMGINFYG----YENAEAVIGSRYIKMLTSYKPKLVWHAAHHEHSFTYKKGEEEHTVFYPTLKSVHDKLELARSLGVGISIWEIGQGLDYF 296          
BLAST of mRNA_M-pyrifera_M_contig117781.3669.1 vs. uniprot
Match: A0A6P5AI28_BRABE (LOW QUALITY PROTEIN: chitinase domain-containing protein 1-like n=1 Tax=Branchiostoma belcheri TaxID=7741 RepID=A0A6P5AI28_BRABE)

HSP 1 Score: 129 bits (323), Expect = 2.050e-32
Identity = 60/129 (46.51%), Postives = 84/129 (65.12%), Query Frame = 1
Query:   25 RPAANAPLSWITQTVLKILPPSARTPENTR--KLMLGMNFYGKDYSFAGANTVLGHDYLQVLEKFKPDMEWLDEEGEHKITYRKAGTEHLLYYPSLLSIQKRLELAESLGVGLAIWELAQGLPYFLALF 405
            RP  NAP+ W+   VL +       PE T   K++LG+NFYG DY+ AG   ++G  Y+ +L ++KP ++W +E  EH   Y+   T+HL+YYP+L SIQ RL+LA+ LG G++IWEL QGL YF  LF
Sbjct:  398 RPGPNAPIDWVKACVLIL------DPEGTHRHKILLGLNFYGNDYTGAGGGPIIGKQYIDLLTQYKPKLKWEEETAEHMFEYKDGTTKHLVYYPTLKSIQARLDLAQELGTGISIWELGQGLDYFYDLF 520          
BLAST of mRNA_M-pyrifera_M_contig117781.3669.1 vs. uniprot
Match: A0A7S4IHS2_9EUKA (Hypothetical protein n=1 Tax=Vannella sp. CB-2014 TaxID=1487602 RepID=A0A7S4IHS2_9EUKA)

HSP 1 Score: 122 bits (305), Expect = 5.260e-32
Identity = 56/123 (45.53%), Postives = 84/123 (68.29%), Query Frame = 1
Query:   37 NAPLSWITQTVLKILPPSARTPENTRKLMLGMNFYGKDYSFAGANTVLGHDYLQVLEKFKPDMEWLDEEGEHKITYRKAGTEHLLYYPSLLSIQKRLELAESLGVGLAIWELAQGLPYFLALF 405
            +AP +W+ Q+VL +LPPS R  E   KL+LG+NF+G  +   G+  +LG+ ++++LE F+P ++W  E+ EH  +Y     E   Y+P+L  I +RL+LAESLGVG+++WEL QGL YF  LF
Sbjct:  101 SAPTNWMMQSVLNLLPPSMRKEEK-HKLLLGLNFFGTTFCEEGSTPILGNQFIELLETFQPTLKWSQEDQEHSFSYSYDELEWTAYFPTLKYIDERLKLAESLGVGISVWELGQGLDYFYDLF 222          
BLAST of mRNA_M-pyrifera_M_contig117781.3669.1 vs. uniprot
Match: A0A087TEX7_STEMI (Chitinase domain-containing protein 1 (Fragment) n=2 Tax=Stegodyphus TaxID=175340 RepID=A0A087TEX7_STEMI)

HSP 1 Score: 125 bits (314), Expect = 9.940e-32
Identity = 57/123 (46.34%), Postives = 81/123 (65.85%), Query Frame = 1
Query:   25 RPAANAPLSWITQTVLKILPPSARTPENTRKLMLGMNFYGKDYSFAGANTVLGHDYLQVLEKFKPDMEWLDEEGEHKITYRKAGTEHLLYYPSLLSIQKRLELAESLGVGLAIWELAQGLPYF 393
            RP  N+PL W+ Q V  ++P   ++    +KL+LG+NFYG DYS      ++GH+Y+ +LEK+KP   + +  GEH  TY     EH ++YP+L SIQ RL+LA+ LG G+AIWE+ QGL YF
Sbjct:  280 RPGPNSPLPWLLQCVEDLIPD--KSSPYRKKLLLGLNFYGNDYSGMSGKPIIGHEYISILEKYKPKFTFNNVTGEHSFTYWSENIEHQVFYPTLYSIQLRLQLAKELGTGVAIWEIGQGLDYF 400          
BLAST of mRNA_M-pyrifera_M_contig117781.3669.1 vs. uniprot
Match: UPI00148A92A6 (chitinase domain-containing protein 1 n=1 Tax=Crassostrea gigas TaxID=29159 RepID=UPI00148A92A6)

HSP 1 Score: 122 bits (306), Expect = 1.100e-30
Identity = 54/123 (43.90%), Postives = 83/123 (67.48%), Query Frame = 1
Query:   25 RPAANAPLSWITQTVLKILPPSARTPENTRKLMLGMNFYGKDYSFAGANTVLGHDYLQVLEKFKPDMEWLDEEGEHKITYRKAGTEHLLYYPSLLSIQKRLELAESLGVGLAIWELAQGLPYF 393
            RP  N+PLSW+   VL + P +   P+  +K++LG+NFYG +YS  G   ++G+ Y+ +L+KFKP  +W  +  EH   Y+    + L+YYP+L S+Q+RL+LA+ LG G++IWE+ QGL YF
Sbjct:  262 RPGPNSPLSWMESCVLALAPDN--DPQVRQKILLGLNFYGNEYSAGGGGPIVGNQYIDILKKFKPKFKWDPQSEEHLAEYKTDRGQGLVYYPTLQSLQRRLDLAKRLGTGISIWEIGQGLDYF 382          
BLAST of mRNA_M-pyrifera_M_contig117781.3669.1 vs. uniprot
Match: A0A6J0BR36_NEOLC (chitinase domain-containing protein 1 n=5 Tax=Diprioninae TaxID=410274 RepID=A0A6J0BR36_NEOLC)

HSP 1 Score: 122 bits (305), Expect = 1.660e-30
Identity = 53/123 (43.09%), Postives = 82/123 (66.67%), Query Frame = 1
Query:   25 RPAANAPLSWITQTVLKILPPSARTPENTRKLMLGMNFYGKDYSFAGANTVLGHDYLQVLEKFKPDMEWLDEEGEHKITYRKAGTEHLLYYPSLLSIQKRLELAESLGVGLAIWELAQGLPYF 393
            RP  N+P+ W+ Q V ++LP  AR P   + ++LG+NFYG DY+  G   ++GH YL +L+ +K  ++W +   EH  +++ +   HL++YPSLLSI  R+ LA+ LG G++IWEL QGL +F
Sbjct:  267 RPGPNSPVDWVRQCVERLLP-DARDPRRAQ-ILLGLNFYGNDYTIDGGGPIVGHQYLNLLQNYKGKLKWDNTSAEHYFSFKTSNGRHLVFYPSLLSINSRISLAKELGTGISIWELGQGLDFF 387          
BLAST of mRNA_M-pyrifera_M_contig117781.3669.1 vs. uniprot
Match: A0A8B8A922_CRAVI (chitinase domain-containing protein 1-like isoform X1 n=2 Tax=Crassostrea virginica TaxID=6565 RepID=A0A8B8A922_CRAVI)

HSP 1 Score: 120 bits (302), Expect = 4.410e-30
Identity = 55/123 (44.72%), Postives = 81/123 (65.85%), Query Frame = 1
Query:   25 RPAANAPLSWITQTVLKILPPSARTPENTRKLMLGMNFYGKDYSFAGANTVLGHDYLQVLEKFKPDMEWLDEEGEHKITYRKAGTEHLLYYPSLLSIQKRLELAESLGVGLAIWELAQGLPYF 393
            RP  N+PLSW+   VL + P     PE  +K++LG+NFYG +YS  G   ++G+ YL++L+K KP  +W     EH   Y+      ++Y+P+LLS+Q+RLELA+ LG G++IWE+ QGL YF
Sbjct:  265 RPGPNSPLSWMESCVLALAPED--NPEVRQKILLGLNFYGNEYSAGGGGPIVGNQYLEILKKNKPKFKWDSNSQEHIAEYKTDWGTGVVYFPTLLSLQRRLELAKQLGTGISIWEIGQGLDYF 385          
BLAST of mRNA_M-pyrifera_M_contig117781.3669.1 vs. uniprot
Match: UPI000C6D854E (chitinase domain-containing protein 1-like isoform X2 n=2 Tax=Centruroides sculpturatus TaxID=218467 RepID=UPI000C6D854E)

HSP 1 Score: 120 bits (300), Expect = 7.750e-30
Identity = 56/127 (44.09%), Postives = 82/127 (64.57%), Query Frame = 1
Query:   25 RPAANAPLSWITQTVLKILPPSARTPENTRKLMLGMNFYGKDYSFAGANTVLGHDYLQVLEKFKPDMEWLDEEGEHKITYRKAGTEHLLYYPSLLSIQKRLELAESLGVGLAIWELAQGLPYFLALF 405
            RP  N+PL WI + +  +L  + +T +N  K++LG+NFYG DY   G   ++G+ Y+ +L K+KP ++W  + GEH   Y+       +YYPSL SI+ RL+LAE  G+G+AIWE+ QGL YF  LF
Sbjct:  258 RPGPNSPLQWIQECMNVLLSDAEQTFKN--KILLGLNFYGNDYKNGGGGPIIGNQYISMLTKYKPKIKWDKKHGEHYFNYKTDFGSGTVYYPSLQSIKLRLQLAEEFGIGVAIWEIGQGLDYFYNLF 382          
BLAST of mRNA_M-pyrifera_M_contig117781.3669.1 vs. uniprot
Match: A0A812BDC7_SEPPH (CHID1 n=1 Tax=Sepia pharaonis TaxID=158019 RepID=A0A812BDC7_SEPPH)

HSP 1 Score: 117 bits (292), Expect = 2.050e-29
Identity = 54/123 (43.90%), Postives = 78/123 (63.41%), Query Frame = 1
Query:   25 RPAANAPLSWITQTVLKILPPSARTPENTRKLMLGMNFYGKDYSFAGANTVLGHDYLQVLEKFKPDMEWLDEEGEHKITYRKAGTEHLLYYPSLLSIQKRLELAESLGVGLAIWELAQGLPYF 393
            RP  N+PL+W+   V  ++P S  T    +K++LG NFYG D+       V+GH ++++L+K KPD+ W     EH I Y+     H++YYPSLLSI+ RLELA+ L  G++IWE+ Q L YF
Sbjct:  162 RPGPNSPLAWMKACVENLVPESNSTLR--KKILLGFNFYGYDFVPGSGEPVIGHKFIEILKKHKPDIRWDQNSAEHTIQYKTGIGHHIIYYPSLLSIETRLELAKYLKTGISIWEIGQALDYF 282          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig117781.3669.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
UPI000719C9637.400e-3347.20chitinase domain-containing protein 1-like n=1 Tax... [more]
L8GGT8_ACACA1.060e-3247.20Chitinase domain containing protein 1, putative n=... [more]
A0A6P5AI28_BRABE2.050e-3246.51LOW QUALITY PROTEIN: chitinase domain-containing p... [more]
A0A7S4IHS2_9EUKA5.260e-3245.53Hypothetical protein n=1 Tax=Vannella sp. CB-2014 ... [more]
A0A087TEX7_STEMI9.940e-3246.34Chitinase domain-containing protein 1 (Fragment) n... [more]
UPI00148A92A61.100e-3043.90chitinase domain-containing protein 1 n=1 Tax=Cras... [more]
A0A6J0BR36_NEOLC1.660e-3043.09chitinase domain-containing protein 1 n=5 Tax=Dipr... [more]
A0A8B8A922_CRAVI4.410e-3044.72chitinase domain-containing protein 1-like isoform... [more]
UPI000C6D854E7.750e-3044.09chitinase domain-containing protein 1-like isoform... [more]
A0A812BDC7_SEPPH2.050e-2943.90CHID1 n=1 Tax=Sepia pharaonis TaxID=158019 RepID=A... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig117781contigM-pyrifera_M_contig117781:92..499 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeMetazoa
Seed ortholog score121.7
Seed ortholog evalue2.6e-25
Seed eggNOG ortholog6500.XP_005094215.1
Preferred nameCHID1
KEGG koko:K17525
Hectar predicted targeting categoryother localisation
GOsGO:0000323,GO:0001817,GO:0001818,GO:0002576,GO:0003674,GO:0003824,GO:0004553,GO:0004568,GO:0005488,GO:0005575,GO:0005576,GO:0005615,GO:0005622,GO:0005623,GO:0005737,GO:0005764,GO:0005768,GO:0005770,GO:0005773,GO:0005775,GO:0005794,GO:0005802,GO:0006022,GO:0006026,GO:0006030,GO:0006032,GO:0006040,GO:0006807,GO:0006810,GO:0006887,GO:0006950,GO:0006952,GO:0006954,GO:0008061,GO:0008144,GO:0008150,GO:0008152,GO:0009056,GO:0009057,GO:0009987,GO:0012505,GO:0016192,GO:0016787,GO:0016798,GO:0017144,GO:0030246,GO:0031347,GO:0031348,GO:0031410,GO:0031974,GO:0031982,GO:0031984,GO:0032101,GO:0032102,GO:0032940,GO:0042737,GO:0043170,GO:0043202,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0044237,GO:0044248,GO:0044421,GO:0044422,GO:0044424,GO:0044431,GO:0044437,GO:0044444,GO:0044446,GO:0044464,GO:0045055,GO:0046348,GO:0046903,GO:0048519,GO:0048583,GO:0048585,GO:0050727,GO:0050728,GO:0050789,GO:0050896,GO:0051179,GO:0051234,GO:0051239,GO:0051241,GO:0065007,GO:0070013,GO:0070492,GO:0071704,GO:0080134,GO:0097367,GO:0097708,GO:0098791,GO:1900015,GO:1900016,GO:1901071,GO:1901072,GO:1901135,GO:1901136,GO:1901564,GO:1901565,GO:1901575
EggNOG free text desc.chitinase activity
EggNOG OGs38HBY@33154,3BGA0@33208,3CRXI@33213,KOG2091@1,KOG2091@2759
COG Functional cat.G
CAZyGH18
Best tax levelBilateria
Best eggNOG OGNA|NA|NA
BRITEko00000,ko04091
Exons1
Model size408
Cds size408
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815695.1912704-CDS-M-pyrifera_M_contig117781:91..4991622815695.1912704-CDS-M-pyrifera_M_contig117781:91..499Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig117781 92..499 +
1692277525.6203096-CDS-M-pyrifera_M_contig117781:91..4991692277525.6203096-CDS-M-pyrifera_M_contig117781:91..499Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig117781 92..499 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig117781.3669.1prot_M-pyrifera_M_contig117781.3669.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig117781 92..499 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig117781.3669.1

>prot_M-pyrifera_M_contig117781.3669.1 ID=prot_M-pyrifera_M_contig117781.3669.1|Name=mRNA_M-pyrifera_M_contig117781.3669.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=136bp
MHAADACGRPAANAPLSWITQTVLKILPPSARTPENTRKLMLGMNFYGKD
YSFAGANTVLGHDYLQVLEKFKPDMEWLDEEGEHKITYRKAGTEHLLYYP
SLLSIQKRLELAESLGVGLAIWELAQGLPYFLALF*
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mRNA from alignment at M-pyrifera_M_contig117781:92..499+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig117781.3669.1 ID=mRNA_M-pyrifera_M_contig117781.3669.1|Name=mRNA_M-pyrifera_M_contig117781.3669.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=408bp|location=Sequence derived from alignment at M-pyrifera_M_contig117781:92..499+ (Macrocystis pyrifera P11B4 male)
ATGCATGCAGCTGACGCATGTGGTAGGCCTGCCGCGAATGCGCCGCTGAG CTGGATCACGCAGACTGTCCTCAAGATTCTGCCTCCCTCGGCAAGGACAC CCGAGAATACGCGGAAGCTAATGCTGGGCATGAACTTCTACGGAAAAGAC TACAGCTTTGCCGGTGCCAACACTGTGCTTGGCCACGACTACCTGCAGGT GCTCGAGAAGTTCAAGCCAGACATGGAGTGGCTGGACGAGGAGGGCGAGC ACAAGATCACCTACAGGAAGGCAGGCACGGAGCACCTCCTCTACTACCCC TCCCTGCTGTCCATCCAGAAGAGGCTTGAGTTGGCAGAGAGCCTTGGCGT TGGCCTTGCTATTTGGGAGCTGGCGCAGGGCCTGCCCTATTTCCTGGCCC TCTTCTAG
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig117781:92..499+

>mRNA_M-pyrifera_M_contig117781.3669.1 ID=mRNA_M-pyrifera_M_contig117781.3669.1|Name=mRNA_M-pyrifera_M_contig117781.3669.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=816bp|location=Sequence derived from alignment at M-pyrifera_M_contig117781:92..499+ (Macrocystis pyrifera P11B4 male)
ATGCATGCAGCTGACGCATGTGGTAGGCCTGCCGCGAATGCGCCGCTGAG
CTGGATCACGCAGACTGTCCTCAAGATTCTGCCTCCCTCGGCAAGGACAC
CCGAGAATACGCGGAAGCTAATGCTGGGCATGAACTTCTACGGAAAAGAC
TACAGCTTTGCCGGTGCCAACACTGTGCTTGGCCACGACTACCTGCAGGT
GCTCGAGAAGTTCAAGCCAGACATGGAGTGGCTGGACGAGGAGGGCGAGC
ACAAGATCACCTACAGGAAGGCAGGCACGGAGCACCTCCTCTACTACCCC
TCCCTGCTGTCCATCCAGAAGAGGCTTGAGTTGGCAGAGAGCCTTGGCGT
TGGCCTTGCTATTTGGGAGCTGGCGCAGGGCCTGCCCTATTTCCTGGCCC
TCTTCTAGATGCATGCAGCTGACGCATGTGGTAGGCCTGCCGCGAATGCG
CCGCTGAGCTGGATCACGCAGACTGTCCTCAAGATTCTGCCTCCCTCGGC
AAGGACACCCGAGAATACGCGGAAGCTAATGCTGGGCATGAACTTCTACG
GAAAAGACTACAGCTTTGCCGGTGCCAACACTGTGCTTGGCCACGACTAC
CTGCAGGTGCTCGAGAAGTTCAAGCCAGACATGGAGTGGCTGGACGAGGA
GGGCGAGCACAAGATCACCTACAGGAAGGCAGGCACGGAGCACCTCCTCT
ACTACCCCTCCCTGCTGTCCATCCAGAAGAGGCTTGAGTTGGCAGAGAGC
CTTGGCGTTGGCCTTGCTATTTGGGAGCTGGCGCAGGGCCTGCCCTATTT
CCTGGCCCTCTTCTAG
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