mRNA_M-pyrifera_M_contig117750.3658.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig117750.3658.1
Unique NamemRNA_M-pyrifera_M_contig117750.3658.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
[Close]
BLAST of mRNA_M-pyrifera_M_contig117750.3658.1 vs. uniprot
Match: A0A2E7T756_9ACTN (Aminotransferase n=6 Tax=Actinobacteria TaxID=201174 RepID=A0A2E7T756_9ACTN)

HSP 1 Score: 84.0 bits (206), Expect = 1.170e-17
Identity = 41/56 (73.21%), Postives = 47/56 (83.93%), Query Frame = 1 
Query:    1 MGETGDRRFRIGHMGHLNPPMILGTLGTIESVLLSMGEPIEQSGVAAAAAVIGSAL 168
            + E  DR FRIGHMGHLNPPMILGTLGTIE+ L +MG P+ +SG AAAAAVIG+AL
Sbjct:  338 LDEFVDRAFRIGHMGHLNPPMILGTLGTIEATLTTMGAPMRESGAAAAAAVIGAAL 393
[Close]
BLAST of mRNA_M-pyrifera_M_contig117750.3658.1 vs. uniprot
Match: A0A2E1WLQ0_9ACTN (Aminotransferase n=1 Tax=Acidimicrobiaceae bacterium TaxID=2024894 RepID=A0A2E1WLQ0_9ACTN)

HSP 1 Score: 82.4 bits (202), Expect = 4.240e-17
Identity = 40/56 (71.43%), Postives = 45/56 (80.36%), Query Frame = 1 
Query:    1 MGETGDRRFRIGHMGHLNPPMILGTLGTIESVLLSMGEPIEQSGVAAAAAVIGSAL 168
            +GE  DR  RIGHMGHLNPPMILGT+GTIE+ L  MG P+  SG AAAAAVIGSA+
Sbjct:  338 LGEFSDRAIRIGHMGHLNPPMILGTIGTIEAALTKMGAPLGASGSAAAAAVIGSAM 393
[Close]
BLAST of mRNA_M-pyrifera_M_contig117750.3658.1 vs. uniprot
Match: A0A0C1UYC1_9ACTN (Aminotran_5 domain-containing protein n=9 Tax=Actinobacteria TaxID=201174 RepID=A0A0C1UYC1_9ACTN)

HSP 1 Score: 82.0 bits (201), Expect = 5.850e-17
Identity = 40/56 (71.43%), Postives = 45/56 (80.36%), Query Frame = 1 
Query:    1 MGETGDRRFRIGHMGHLNPPMILGTLGTIESVLLSMGEPIEQSGVAAAAAVIGSAL 168
            + E  DR  RIGHMGHLNPPMILGTLGTIE+ L+ MG P+  SG AAAAAVIG+AL
Sbjct:  338 LDEFADRAIRIGHMGHLNPPMILGTLGTIEAALIKMGAPMGSSGAAAAAAVIGAAL 393
[Close]
BLAST of mRNA_M-pyrifera_M_contig117750.3658.1 vs. uniprot
Match: A0A7C7TLF3_9ACTN (Aminotransferase class V-fold PLP-dependent enzyme n=2 Tax=Acidimicrobiia TaxID=84992 RepID=A0A7C7TLF3_9ACTN)

HSP 1 Score: 80.1 bits (196), Expect = 2.910e-16
Identity = 40/56 (71.43%), Postives = 44/56 (78.57%), Query Frame = 1 
Query:    1 MGETGDRRFRIGHMGHLNPPMILGTLGTIESVLLSMGEPIEQSGVAAAAAVIGSAL 168
            + E  DR  RIGHMGHLNPPMILGT+GTIE+ L  MG P+  SG AAAAAVIGSAL
Sbjct:  338 LAEFADRAIRIGHMGHLNPPMILGTIGTIEAALTKMGAPMGGSGSAAAAAVIGSAL 393
[Close]
BLAST of mRNA_M-pyrifera_M_contig117750.3658.1 vs. uniprot
Match: A0A350RH43_9ACTN (Aminotransferase (Fragment) n=1 Tax=Acidimicrobiaceae bacterium TaxID=2024894 RepID=A0A350RH43_9ACTN)

HSP 1 Score: 77.8 bits (190), Expect = 3.150e-16
Identity = 39/56 (69.64%), Postives = 43/56 (76.79%), Query Frame = 1 
Query:    1 MGETGDRRFRIGHMGHLNPPMILGTLGTIESVLLSMGEPIEQSGVAAAAAVIGSAL 168
            + +  D   RIGHMGHLNPPMILGTLGTIE+ L  MG P+  SGVAAAAAVIG AL
Sbjct:  157 LDQFADCAIRIGHMGHLNPPMILGTLGTIEAALTKMGAPMGSSGVAAAAAVIGEAL 212
[Close]
BLAST of mRNA_M-pyrifera_M_contig117750.3658.1 vs. uniprot
Match: A0A381Q268_9ZZZZ (Aminotran_5 domain-containing protein n=3 Tax=root TaxID=1 RepID=A0A381Q268_9ZZZZ)

HSP 1 Score: 79.3 bits (194), Expect = 5.350e-16
Identity = 39/56 (69.64%), Postives = 45/56 (80.36%), Query Frame = 1 
Query:    1 MGETGDRRFRIGHMGHLNPPMILGTLGTIESVLLSMGEPIEQSGVAAAAAVIGSAL 168
            + E  DR  RIGHMGHLNP MILGTLGTIE+ L  MG P+++SG AAAAAVIGSA+
Sbjct:  330 LDEFADRAIRIGHMGHLNPHMILGTLGTIEAALTKMGVPMKESGAAAAAAVIGSAM 385
[Close]
BLAST of mRNA_M-pyrifera_M_contig117750.3658.1 vs. uniprot
Match: A0A2E3CP13_9ACTN (Aminotransferase n=1 Tax=Acidimicrobiaceae bacterium TaxID=2024894 RepID=A0A2E3CP13_9ACTN)

HSP 1 Score: 79.0 bits (193), Expect = 7.620e-16
Identity = 39/56 (69.64%), Postives = 43/56 (76.79%), Query Frame = 1 
Query:    1 MGETGDRRFRIGHMGHLNPPMILGTLGTIESVLLSMGEPIEQSGVAAAAAVIGSAL 168
            + E  DR  RIGHMGHLNPPMILGTLGTIE+ L  MG P+  SG AAAAA IG+AL
Sbjct:  338 LDEFADRAIRIGHMGHLNPPMILGTLGTIEAALTKMGSPMGSSGSAAAAATIGAAL 393
[Close]
BLAST of mRNA_M-pyrifera_M_contig117750.3658.1 vs. uniprot
Match: A0A2E9XBM8_9ACTN (Aminotransferase n=1 Tax=Actinomycetia bacterium TaxID=1883427 RepID=A0A2E9XBM8_9ACTN)

HSP 1 Score: 76.6 bits (187), Expect = 5.180e-15
Identity = 39/56 (69.64%), Postives = 43/56 (76.79%), Query Frame = 1 
Query:    1 MGETGDRRFRIGHMGHLNPPMILGTLGTIESVLLSMGEPIEQSGVAAAAAVIGSAL 168
            +GE  DR  RIGHMGHLNP MILGT+GTIE+ L SMG PI  SGVA AA +IGS L
Sbjct:  338 LGEFADRSIRIGHMGHLNPHMILGTIGTIEACLGSMGAPIGSSGVAVAAQLIGSRL 393
[Close]
BLAST of mRNA_M-pyrifera_M_contig117750.3658.1 vs. uniprot
Match: A0A351EYR7_9ACTN (Aminotransferase (Fragment) n=1 Tax=Acidimicrobiaceae bacterium TaxID=2024894 RepID=A0A351EYR7_9ACTN)

HSP 1 Score: 71.2 bits (173), Expect = 5.960e-15
Identity = 34/53 (64.15%), Postives = 40/53 (75.47%), Query Frame = 1 
Query:    1 MGETGDRRFRIGHMGHLNPPMILGTLGTIESVLLSMGEPIEQSGVAAAAAVIG 159
            +G  G   FR+ HMGHLNPPMILG LGTIE+ L S+G P+  SGVAAAAA +G
Sbjct:   27 LGIAGIEGFRLAHMGHLNPPMILGALGTIEAALHSLGTPMTSSGVAAAAAALG 79
[Close]
BLAST of mRNA_M-pyrifera_M_contig117750.3658.1 vs. uniprot
Match: A0A351EMS9_9ACTN (Aminotransferase n=2 Tax=Acidimicrobiaceae bacterium TaxID=2024894 RepID=A0A351EMS9_9ACTN)

HSP 1 Score: 75.1 bits (183), Expect = 1.850e-14
Identity = 38/56 (67.86%), Postives = 43/56 (76.79%), Query Frame = 1 
Query:    1 MGETGDRRFRIGHMGHLNPPMILGTLGTIESVLLSMGEPIEQSGVAAAAAVIGSAL 168
            + E   R FRIGHMGHLNPPM+LGT+GTIE+VL  M  P+  SG AAAAAVI SAL
Sbjct:  338 LDEFVSRAFRIGHMGHLNPPMVLGTIGTIEAVLTKMKAPVGGSGSAAAAAVISSAL 393
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig117750.3658.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A2E7T756_9ACTN1.170e-1773.21Aminotransferase n=6 Tax=Actinobacteria TaxID=2011... [more]
A0A2E1WLQ0_9ACTN4.240e-1771.43Aminotransferase n=1 Tax=Acidimicrobiaceae bacteri... [more]
A0A0C1UYC1_9ACTN5.850e-1771.43Aminotran_5 domain-containing protein n=9 Tax=Acti... [more]
A0A7C7TLF3_9ACTN2.910e-1671.43Aminotransferase class V-fold PLP-dependent enzyme... [more]
A0A350RH43_9ACTN3.150e-1669.64Aminotransferase (Fragment) n=1 Tax=Acidimicrobiac... [more]
A0A381Q268_9ZZZZ5.350e-1669.64Aminotran_5 domain-containing protein n=3 Tax=root... [more]
A0A2E3CP13_9ACTN7.620e-1669.64Aminotransferase n=1 Tax=Acidimicrobiaceae bacteri... [more]
A0A2E9XBM8_9ACTN5.180e-1569.64Aminotransferase n=1 Tax=Actinomycetia bacterium T... [more]
A0A351EYR7_9ACTN5.960e-1564.15Aminotransferase (Fragment) n=1 Tax=Acidimicrobiac... [more]
A0A351EMS9_9ACTN1.850e-1467.86Aminotransferase n=2 Tax=Acidimicrobiaceae bacteri... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig117750contigM-pyrifera_M_contig117750:1..174 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeBacteria
Seed ortholog score60.1
Seed ortholog evalue4e-07
Seed eggNOG ortholog316057.RPD_0780
Preferred nameMA20_39235
KEGG rclassRC00006,RC00008,RC00018
KEGG koko:K00830
KEGG ReactionR00369,R00372,R00585,R00588
KEGG Pathwayko00250,ko00260,ko00630,ko00680,ko01100,ko01110,ko01120,ko01130,ko01200,ko04146,map00250,map00260,map00630,map00680,map01100,map01110,map01120,map01130,map01200,map04146
KEGG ModuleM00346,M00532
Hectar predicted targeting categoryno signal peptide or anchor
EggNOG free text desc.Aminotransferase class-V
EggNOG OGs1MWHJ@1224,2TQSN@28211,3JRRY@41294,COG0075@1,COG0075@2
EC2.6.1.44,2.6.1.45,2.6.1.51
COG Functional cat.E
Best tax levelBradyrhizobiaceae
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000,ko01007
Exons1
Model size174
Cds size174
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815694.636842-CDS-M-pyrifera_M_contig117750:0..1741622815694.636842-CDS-M-pyrifera_M_contig117750:0..174Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig117750 1..174 +
1692277525.4076006-CDS-M-pyrifera_M_contig117750:0..1741692277525.4076006-CDS-M-pyrifera_M_contig117750:0..174Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig117750 1..174 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig117750.3658.1prot_M-pyrifera_M_contig117750.3658.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig117750 1..174 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig117750.3658.1

>prot_M-pyrifera_M_contig117750.3658.1 ID=prot_M-pyrifera_M_contig117750.3658.1|Name=mRNA_M-pyrifera_M_contig117750.3658.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=58bp
MGETGDRRFRIGHMGHLNPPMILGTLGTIESVLLSMGEPIEQSGVAAAAA
VIGSALT*
back to top

mRNA from alignment at M-pyrifera_M_contig117750:1..174+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig117750.3658.1 ID=mRNA_M-pyrifera_M_contig117750.3658.1|Name=mRNA_M-pyrifera_M_contig117750.3658.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=174bp|location=Sequence derived from alignment at M-pyrifera_M_contig117750:1..174+ (Macrocystis pyrifera P11B4 male)
ATGGGCGAGACCGGCGACCGCCGGTTCCGCATCGGACACATGGGCCATCT
CAATCCGCCGATGATCCTGGGCACGCTCGGCACGATCGAGTCGGTGCTGT
TGTCGATGGGCGAGCCGATCGAGCAGTCCGGCGTCGCCGCCGCTGCTGCG
GTGATCGGTAGTGCGCTCACCTGA
back to top

Coding sequence (CDS) from alignment at M-pyrifera_M_contig117750:1..174+

>mRNA_M-pyrifera_M_contig117750.3658.1 ID=mRNA_M-pyrifera_M_contig117750.3658.1|Name=mRNA_M-pyrifera_M_contig117750.3658.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=348bp|location=Sequence derived from alignment at M-pyrifera_M_contig117750:1..174+ (Macrocystis pyrifera P11B4 male)
ATGGGCGAGACCGGCGACCGCCGGTTCCGCATCGGACACATGGGCCATCT
CAATCCGCCGATGATCCTGGGCACGCTCGGCACGATCGAGTCGGTGCTGT
TGTCGATGGGCGAGCCGATCGAGCAGTCCGGCGTCGCCGCCGCTGCTGCG
GTGATCGGTAGTGCGCTCACCTGAATGGGCGAGACCGGCGACCGCCGGTT
CCGCATCGGACACATGGGCCATCTCAATCCGCCGATGATCCTGGGCACGC
TCGGCACGATCGAGTCGGTGCTGTTGTCGATGGGCGAGCCGATCGAGCAG
TCCGGCGTCGCCGCCGCTGCTGCGGTGATCGGTAGTGCGCTCACCTGA
back to top