mRNA_M-pyrifera_M_contig117745.3656.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig117745.3656.1
Unique NamemRNA_M-pyrifera_M_contig117745.3656.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig117745.3656.1 vs. uniprot
Match: A0A6H5KU03_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KU03_9PHAE)

HSP 1 Score: 111 bits (278), Expect = 2.210e-27
Identity = 53/65 (81.54%), Postives = 56/65 (86.15%), Query Frame = 1 
Query:    1 ETDRRGRTALFWAAGGGSVGACSALTEGDRGLRPCDPGGDGSTPLHWAAAGVQARRFGTGGDVDV 195
            ETDRRGRTALFWAAGGGSV AC AL EG+ GLRP D GGDGSTPLHWA AGV+ RRFGTGG V+V
Sbjct:  244 ETDRRGRTALFWAAGGGSVEACEALVEGEGGLRPQDSGGDGSTPLHWAVAGVETRRFGTGGHVNV 308
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BLAST of mRNA_M-pyrifera_M_contig117745.3656.1 vs. uniprot
Match: D8LGD8_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LGD8_ECTSI)

HSP 1 Score: 111 bits (278), Expect = 2.300e-27
Identity = 53/65 (81.54%), Postives = 56/65 (86.15%), Query Frame = 1 
Query:    1 ETDRRGRTALFWAAGGGSVGACSALTEGDRGLRPCDPGGDGSTPLHWAAAGVQARRFGTGGDVDV 195
            ETDRRGRTALFWAAGGGSV AC AL EG+ GLRP D GGDGSTPLHWA AGV+ RRFGTGG V+V
Sbjct:  348 ETDRRGRTALFWAAGGGSVEACKALVEGEGGLRPQDSGGDGSTPLHWAVAGVETRRFGTGGHVNV 412
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BLAST of mRNA_M-pyrifera_M_contig117745.3656.1 vs. uniprot
Match: B7FSM1_PHATC (Predicted protein n=1 Tax=Phaeodactylum tricornutum (strain CCAP 1055/1) TaxID=556484 RepID=B7FSM1_PHATC)

HSP 1 Score: 59.3 bits (142), Expect = 1.050e-8
Identity = 35/66 (53.03%), Postives = 41/66 (62.12%), Query Frame = 1 
Query:    1 ETDRRGRTALFWAAGGGSV-GACSALTEGDRGLRPCDPGGDGSTPLHWAAAGVQARRFGTGGDVDV 195
            E D RG T L WAAG G++ G  + L    +G+R      D +TPLHWAAAGV AR FGTGG V V
Sbjct:  326 ERDHRGATLLHWAAGVGNLPGVQTLLPHFPQGVRVTTKR-DHATPLHWAAAGVNAREFGTGGSVKV 390
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BLAST of mRNA_M-pyrifera_M_contig117745.3656.1 vs. uniprot
Match: A0A0M0JUH1_9EUKA (Ankyrin repeat protein (Fragment) n=1 Tax=Chrysochromulina tobinii TaxID=1460289 RepID=A0A0M0JUH1_9EUKA)

HSP 1 Score: 49.3 bits (116), Expect = 3.580e-5
Identity = 26/53 (49.06%), Postives = 33/53 (62.26%), Query Frame = 1 
Query:    7 DRRGRTALFWAAGGGSVGACSALTEGDRGLRPCDPGGDGSTPLHWAAAGVQAR 165
            D+RG +AL +AAG G V  C+ L     GL   D   DG+TPLHWA AG+ +R
Sbjct:   44 DKRGASALHYAAGHGHVECCALLCA--AGLEVDDRAQDGATPLHWAVAGMTSR 94
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig117745.3656.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
A0A6H5KU03_9PHAE2.210e-2781.54Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LGD8_ECTSI2.300e-2781.54Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
B7FSM1_PHATC1.050e-853.03Predicted protein n=1 Tax=Phaeodactylum tricornutu... [more]
A0A0M0JUH1_9EUKA3.580e-549.06Ankyrin repeat protein (Fragment) n=1 Tax=Chrysoch... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig117745contigM-pyrifera_M_contig117745:170..364 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score113.6
Seed ortholog evalue3.4e-23
Seed eggNOG ortholog2880.D8LGD8
Preferred nameANKRD16
KEGG koko:K20032
KEGG TC9.B.37.1,9.B.37.3
Hectar predicted targeting categoryother localisation
EggNOG free text desc.response to abiotic stimulus
EggNOG OGsCOG0666@1,KOG0504@2759
EC2.3.1.225
COG Functional cat.G
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000,ko04131
Exons1
Model size195
Cds size195
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815694.5581634-CDS-M-pyrifera_M_contig117745:169..3641622815694.5581634-CDS-M-pyrifera_M_contig117745:169..364Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig117745 170..364 +
1692277525.372505-CDS-M-pyrifera_M_contig117745:169..3641692277525.372505-CDS-M-pyrifera_M_contig117745:169..364Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig117745 170..364 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig117745.3656.1prot_M-pyrifera_M_contig117745.3656.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig117745 170..364 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig117745.3656.1

>prot_M-pyrifera_M_contig117745.3656.1 ID=prot_M-pyrifera_M_contig117745.3656.1|Name=mRNA_M-pyrifera_M_contig117745.3656.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=65bp
ETDRRGRTALFWAAGGGSVGACSALTEGDRGLRPCDPGGDGSTPLHWAAA
GVQARRFGTGGDVDV
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mRNA from alignment at M-pyrifera_M_contig117745:170..364+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig117745.3656.1 ID=mRNA_M-pyrifera_M_contig117745.3656.1|Name=mRNA_M-pyrifera_M_contig117745.3656.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=195bp|location=Sequence derived from alignment at M-pyrifera_M_contig117745:170..364+ (Macrocystis pyrifera P11B4 male)
GAGACCGACAGACGGGGTCGCACGGCGCTGTTTTGGGCCGCCGGGGGGGG
CTCCGTCGGTGCCTGCTCGGCGCTCACGGAGGGAGACCGTGGGCTGCGTC
CGTGTGACCCTGGCGGGGATGGGTCGACACCTTTGCACTGGGCAGCGGCG
GGAGTTCAGGCGAGGCGGTTCGGTACGGGTGGGGATGTCGATGTG
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig117745:170..364+

>mRNA_M-pyrifera_M_contig117745.3656.1 ID=mRNA_M-pyrifera_M_contig117745.3656.1|Name=mRNA_M-pyrifera_M_contig117745.3656.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=390bp|location=Sequence derived from alignment at M-pyrifera_M_contig117745:170..364+ (Macrocystis pyrifera P11B4 male)
GAGACCGACAGACGGGGTCGCACGGCGCTGTTTTGGGCCGCCGGGGGGGG
CTCCGTCGGTGCCTGCTCGGCGCTCACGGAGGGAGACCGTGGGCTGCGTC
CGTGTGACCCTGGCGGGGATGGGTCGACACCTTTGCACTGGGCAGCGGCG
GGAGTTCAGGCGAGGCGGTTCGGTACGGGTGGGGATGTCGATGTGGAGAC
CGACAGACGGGGTCGCACGGCGCTGTTTTGGGCCGCCGGGGGGGGCTCCG
TCGGTGCCTGCTCGGCGCTCACGGAGGGAGACCGTGGGCTGCGTCCGTGT
GACCCTGGCGGGGATGGGTCGACACCTTTGCACTGGGCAGCGGCGGGAGT
TCAGGCGAGGCGGTTCGGTACGGGTGGGGATGTCGATGTG
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