mRNA_M-pyrifera_M_contig117686.3653.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig117686.3653.1
Unique NamemRNA_M-pyrifera_M_contig117686.3653.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig117686.3653.1 vs. uniprot
Match: A0A3D3RE00_9PLAN (Very short patch repair endonuclease n=2 Tax=Gimesia TaxID=1649453 RepID=A0A3D3RE00_9PLAN)

HSP 1 Score: 304 bits (778), Expect = 1.310e-104
Identity = 143/143 (100.00%), Postives = 143/143 (100.00%), Query Frame = 1
Query:    1 SWNMSRIKNRDTKPELIVRSLLHRMGYRFRLHRKDLPGKPDIVLPKYKTVIFVHGCFWHRHKGCKYAYNPKSRVDFWKKKFASNVKRDITASKELESNGWKVIIIWECETSDIDALARLLNESILHSMPYKQFHRRQSLSKSL 429
            SWNMSRIKNRDTKPELIVRSLLHRMGYRFRLHRKDLPGKPDIVLPKYKTVIFVHGCFWHRHKGCKYAYNPKSRVDFWKKKFASNVKRDITASKELESNGWKVIIIWECETSDIDALARLLNESILHSMPYKQFHRRQSLSKSL
Sbjct:   11 SWNMSRIKNRDTKPELIVRSLLHRMGYRFRLHRKDLPGKPDIVLPKYKTVIFVHGCFWHRHKGCKYAYNPKSRVDFWKKKFASNVKRDITASKELESNGWKVIIIWECETSDIDALARLLNESILHSMPYKQFHRRQSLSKSL 153          
BLAST of mRNA_M-pyrifera_M_contig117686.3653.1 vs. uniprot
Match: A0A517XIZ2_9PLAN (Very short patch repair endonuclease n=1 Tax=Gimesia maris TaxID=122 RepID=A0A517XIZ2_9PLAN)

HSP 1 Score: 213 bits (543), Expect = 4.340e-69
Identity = 93/120 (77.50%), Postives = 105/120 (87.50%), Query Frame = 1
Query:    1 SWNMSRIKNRDTKPELIVRSLLHRMGYRFRLHRKDLPGKPDIVLPKYKTVIFVHGCFWHRHKGCKYAYNPKSRVDFWKKKFASNVKRDITASKELESNGWKVIIIWECETSDIDALARLL 360
            SWNMSRIKNRDTKPELIVRSLL+RMGYRFRLHRKDLPGKPDIVLPKYKTVIFVHGCFWHRHKGCKYAYNPKSRV+FWK+KFA  ++RD    + L  +GW +I+IWECE  D++ L+  L
Sbjct:   11 SWNMSRIKNRDTKPELIVRSLLYRMGYRFRLHRKDLPGKPDIVLPKYKTVIFVHGCFWHRHKGCKYAYNPKSRVNFWKRKFADTIERDKRQQQSLRKSGWNIIVIWECECMDLELLSNKL 130          
BLAST of mRNA_M-pyrifera_M_contig117686.3653.1 vs. uniprot
Match: A0A7X9JCX6_9BACT (Very short patch repair endonuclease n=1 Tax=Candidatus Moranbacteria bacterium TaxID=2045217 RepID=A0A7X9JCX6_9BACT)

HSP 1 Score: 196 bits (498), Expect = 2.820e-62
Identity = 84/125 (67.20%), Postives = 103/125 (82.40%), Query Frame = 1
Query:    1 SWNMSRIKNRDTKPELIVRSLLHRMGYRFRLHRKDLPGKPDIVLPKYKTVIFVHGCFWHRHKGCKYAYNPKSRVDFWKKKFASNVKRDITASKELESNGWKVIIIWECETSDIDALARLLNESIL 375
            SWNMSRI + +TKPE+IVRSLLHRMGYRFRLH KDLPGKPDIVLPKY+TVIFVHGCFWHRH GC+YAY PKSR+ FW++KF+ N++RD  A  +LE   WKV+ +WECET ++ +L   L  +I+
Sbjct:   10 SWNMSRIHSGNTKPEIIVRSLLHRMGYRFRLHSKDLPGKPDIVLPKYRTVIFVHGCFWHRHTGCRYAYTPKSRISFWEEKFSRNIERDHEAKDKLEIRNWKVLTVWECETRNVQSLIAKLRTNIV 134          
BLAST of mRNA_M-pyrifera_M_contig117686.3653.1 vs. uniprot
Match: UPI000557CFA8 (DNA mismatch endonuclease Vsr n=1 Tax=Desulfobacter vibrioformis TaxID=34031 RepID=UPI000557CFA8)

HSP 1 Score: 193 bits (491), Expect = 3.390e-61
Identity = 84/112 (75.00%), Postives = 93/112 (83.04%), Query Frame = 1
Query:    1 SWNMSRIKNRDTKPELIVRSLLHRMGYRFRLHRKDLPGKPDIVLPKYKTVIFVHGCFWHRHKGCKYAYNPKSRVDFWKKKFASNVKRDITASKELESNGWKVIIIWECETSD 336
            SWNMSRIKNRDTKPE+ VRSLLHRMGYRFRLHRKDLPGKPDIVLPKY TVIFVHGCFWHRHK C +AY PKS + FW +KF  N++RD     ELE+ GW V IIWECE ++
Sbjct:   10 SWNMSRIKNRDTKPEITVRSLLHRMGYRFRLHRKDLPGKPDIVLPKYNTVIFVHGCFWHRHKNCHFAYTPKSNITFWTEKFEKNIRRDAKNKAELENLGWNVRIIWECEANN 121          
BLAST of mRNA_M-pyrifera_M_contig117686.3653.1 vs. uniprot
Match: A0A8D5FZI0_9DELT (Very short patch repair endonuclease n=1 Tax=Desulfomarina profundi TaxID=2772557 RepID=A0A8D5FZI0_9DELT)

HSP 1 Score: 192 bits (488), Expect = 6.580e-61
Identity = 85/119 (71.43%), Postives = 96/119 (80.67%), Query Frame = 1
Query:   10 MSRIKNRDTKPELIVRSLLHRMGYRFRLHRKDLPGKPDIVLPKYKTVIFVHGCFWHRHKGCKYAYNPKSRVDFWKKKFASNVKRDITASKELESNGWKVIIIWECETSDIDALARLLNE 366
            MSRIKNRDTKPE+IVRSLLHR GYRFRLHRKDLPGKPDIVLP+YKT+I VHGCFWHRH+GC+YAY PK+RVDFW+KKF  N KRD     EL   GWKV ++WECET   + L   L +
Sbjct:    1 MSRIKNRDTKPEIIVRSLLHRAGYRFRLHRKDLPGKPDIVLPRYKTIILVHGCFWHRHEGCRYAYYPKTRVDFWQKKFRQNAKRDQKVQNELLKLGWKVCVVWECETRKPEILISKLQQ 119          
BLAST of mRNA_M-pyrifera_M_contig117686.3653.1 vs. uniprot
Match: A0A7C5BIF2_9EURY (DNA mismatch endonuclease Vsr n=1 Tax=Euryarchaeota archaeon TaxID=2026739 RepID=A0A7C5BIF2_9EURY)

HSP 1 Score: 191 bits (486), Expect = 1.960e-60
Identity = 83/121 (68.60%), Postives = 99/121 (81.82%), Query Frame = 1
Query:    1 SWNMSRIKNRDTKPELIVRSLLHRMGYRFRLHRKDLPGKPDIVLPKYKTVIFVHGCFWHRHKGCKYAYNPKSRVDFWKKKFASNVKRDITASKELESNGWKVIIIWECETSDIDALARLLN 363
            SWNMSRI+++DT PE +VRSLLHRMGYRFRLH K LPG PDIVLPK+KTVIFVHGCFWHRH GC++AY PKSRVDFW KKF  NVK    A  EL+  GW+V+++WEC+ S++D L R L+
Sbjct:   11 SWNMSRIRSKDTGPEKVVRSLLHRMGYRFRLHVKSLPGTPDIVLPKFKTVIFVHGCFWHRHPGCRFAYTPKSRVDFWMKKFDQNVKAHEKAVGELKEQGWRVLVVWECDLSELDLLERKLS 131          
BLAST of mRNA_M-pyrifera_M_contig117686.3653.1 vs. uniprot
Match: A0A517YS29_9BACT (Very short patch repair endonuclease n=1 Tax=Poriferisphaera corsica TaxID=2528020 RepID=A0A517YS29_9BACT)

HSP 1 Score: 191 bits (485), Expect = 2.780e-60
Identity = 81/116 (69.83%), Postives = 100/116 (86.21%), Query Frame = 1
Query:    1 SWNMSRIKNRDTKPELIVRSLLHRMGYRFRLHRKDLPGKPDIVLPKYKTVIFVHGCFWHRHKGCKYAYNPKSRVDFWKKKFASNVKRDITASKELESNGWKVIIIWECETSDIDAL 348
            SWNMSRI++++TKPELIVRSLL++MGYRFRLHRKDLPGKPDIVLPKYKTVIFVHGC+WHRH  CK AY PKS + FW+ KF+  +KRD   +K+++  GW+VIIIWECET++ + L
Sbjct:   11 SWNMSRIRSKNTKPELIVRSLLYKMGYRFRLHRKDLPGKPDIVLPKYKTVIFVHGCYWHRHADCKLAYKPKSHIHFWQNKFSKTIKRDRLRTKQIQDLGWRVIIIWECETANTEIL 126          
BLAST of mRNA_M-pyrifera_M_contig117686.3653.1 vs. uniprot
Match: A0A410H2P0_9GAMM (Very short patch repair endonuclease n=1 Tax=Hydrogenovibrio thermophilus TaxID=265883 RepID=A0A410H2P0_9GAMM)

HSP 1 Score: 189 bits (479), Expect = 2.510e-59
Identity = 88/124 (70.97%), Postives = 99/124 (79.84%), Query Frame = 1
Query:    1 SWNMSRIKNRDTKPELIVRSLLHRMGYRFRLHRKDLPGKPDIVLPKYKTVIFVHGCFWHRHKGCKYAYNPKSRVDFWKKKFASNVKRDITASKELESNGWKVIIIWECET--SDIDALARLLNE 366
            SWNMSRI N+DTKPELIVR LLH+ GYRFRLHRKDLPGKPD+VLPKYKTVIFVHGCFWH H+GCK A  PK+R +FWKKK   NVKRD    + L+  GW VII+WECET  S++  LARL  E
Sbjct:   11 SWNMSRISNKDTKPELIVRKLLHKNGYRFRLHRKDLPGKPDLVLPKYKTVIFVHGCFWHMHEGCKDAGIPKTRTEFWKKKLEENVKRDKKNIQLLKKLGWNVIIVWECETHNSEVQLLARLGKE 134          
BLAST of mRNA_M-pyrifera_M_contig117686.3653.1 vs. uniprot
Match: A0A350M7P4_9FLAO (Very short patch repair endonuclease n=1 Tax=Flavobacteriales bacterium TaxID=2021391 RepID=A0A350M7P4_9FLAO)

HSP 1 Score: 187 bits (474), Expect = 1.490e-58
Identity = 82/120 (68.33%), Postives = 97/120 (80.83%), Query Frame = 1
Query:    1 SWNMSRIKNRDTKPELIVRSLLHRMGYRFRLHRKDLPGKPDIVLPKYKTVIFVHGCFWHRHKGCKYAYNPKSRVDFWKKKFASNVKRDITASKELESNGWKVIIIWECETSDIDALARLL 360
            SWNMS IK RDTKPE+IVR +LHR+GYRFRLHRK+LPG PDIVLPKY TVIFVHGCFWHRH GC+YAY PKSRV+FW+ K   N++RD   S +L+  GW+V IIWECET + + L + L
Sbjct:   10 SWNMSLIKGRDTKPEMIVRKMLHRLGYRFRLHRKNLPGTPDIVLPKYNTVIFVHGCFWHRHAGCRYAYKPKSRVNFWQDKIRQNMERDRKVSLQLKELGWQVEIIWECETKNNEKLVQQL 129          
BLAST of mRNA_M-pyrifera_M_contig117686.3653.1 vs. uniprot
Match: A0A1G0LTE6_9DELT (Very short patch repair endonuclease n=2 Tax=Geobacteraceae TaxID=213422 RepID=A0A1G0LTE6_9DELT)

HSP 1 Score: 186 bits (472), Expect = 1.980e-58
Identity = 84/121 (69.42%), Postives = 96/121 (79.34%), Query Frame = 1
Query:   10 MSRIKNRDTKPELIVRSLLHRMGYRFRLHRKDLPGKPDIVLPKYKTVIFVHGCFWHRHKGCKYAYNPKSRVDFWKKKFASNVKRDITASKELESNGWKVIIIWECETSDIDALARLLNESI 372
            MSRIK R+TKPEL VRSLLHRMGYRFRLHR DLPGKPDIVL +Y+TVIFVHGCFWHRHK C++AY PKSR +FW KK  SNV RDI    +LE  GW+VI +WECE  D+D LA  L+  +
Sbjct:    1 MSRIKGRNTKPELAVRSLLHRMGYRFRLHRADLPGKPDIVLSRYRTVIFVHGCFWHRHKDCRFAYTPKSRTEFWLKKLESNVIRDIQVKSDLELLGWRVITLWECELRDMDQLAARLDADL 121          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig117686.3653.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A3D3RE00_9PLAN1.310e-104100.00Very short patch repair endonuclease n=2 Tax=Gimes... [more]
A0A517XIZ2_9PLAN4.340e-6977.50Very short patch repair endonuclease n=1 Tax=Gimes... [more]
A0A7X9JCX6_9BACT2.820e-6267.20Very short patch repair endonuclease n=1 Tax=Candi... [more]
UPI000557CFA83.390e-6175.00DNA mismatch endonuclease Vsr n=1 Tax=Desulfobacte... [more]
A0A8D5FZI0_9DELT6.580e-6171.43Very short patch repair endonuclease n=1 Tax=Desul... [more]
A0A7C5BIF2_9EURY1.960e-6068.60DNA mismatch endonuclease Vsr n=1 Tax=Euryarchaeot... [more]
A0A517YS29_9BACT2.780e-6069.83Very short patch repair endonuclease n=1 Tax=Porif... [more]
A0A410H2P0_9GAMM2.510e-5970.97Very short patch repair endonuclease n=1 Tax=Hydro... [more]
A0A350M7P4_9FLAO1.490e-5868.33Very short patch repair endonuclease n=1 Tax=Flavo... [more]
A0A1G0LTE6_9DELT1.980e-5869.42Very short patch repair endonuclease n=2 Tax=Geoba... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig117686contigM-pyrifera_M_contig117686:122..553 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeBacteria
Seed ortholog score176.8
Seed ortholog evalue7.2e-42
Seed eggNOG ortholog74546.PMT9312_0372
Preferred namevsr
KEGG koko:K07458
Hectar predicted targeting categoryother localisation
EggNOG free text desc.May nick specific sequences that contain T G mispairs resulting from m5C-deamination
EggNOG OGs1GE23@1117,COG3727@1,COG3727@2
COG Functional cat.L
Best tax levelCyanobacteria
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000,ko03400
Exons1
Model size432
Cds size423
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815694.4154015-CDS-M-pyrifera_M_contig117686:121..5441622815694.4154015-CDS-M-pyrifera_M_contig117686:121..544Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig117686 122..544 -
1692277525.305452-CDS-M-pyrifera_M_contig117686:121..5441692277525.305452-CDS-M-pyrifera_M_contig117686:121..544Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig117686 122..544 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815694.4260972-UTR-M-pyrifera_M_contig117686:544..5531622815694.4260972-UTR-M-pyrifera_M_contig117686:544..553Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig117686 545..553 -
1692277525.3156002-UTR-M-pyrifera_M_contig117686:544..5531692277525.3156002-UTR-M-pyrifera_M_contig117686:544..553Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig117686 545..553 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig117686.3653.1prot_M-pyrifera_M_contig117686.3653.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig117686 122..544 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig117686.3653.1

>prot_M-pyrifera_M_contig117686.3653.1 ID=prot_M-pyrifera_M_contig117686.3653.1|Name=mRNA_M-pyrifera_M_contig117686.3653.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=141bp
MSRIKNRDTKPELIVRSLLHRMGYRFRLHRKDLPGKPDIVLPKYKTVIFV
HGCFWHRHKGCKYAYNPKSRVDFWKKKFASNVKRDITASKELESNGWKVI
IIWECETSDIDALARLLNESILHSMPYKQFHRRQSLSKSL*
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mRNA from alignment at M-pyrifera_M_contig117686:122..553-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig117686.3653.1 ID=mRNA_M-pyrifera_M_contig117686.3653.1|Name=mRNA_M-pyrifera_M_contig117686.3653.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=432bp|location=Sequence derived from alignment at M-pyrifera_M_contig117686:122..553- (Macrocystis pyrifera P11B4 male)
AGCTGGAATATGTCGCGAATCAAAAATCGTGACACAAAGCCAGAATTAAT TGTTCGATCACTGCTTCACAGAATGGGATATCGATTTCGGCTTCATCGAA AGGATTTACCTGGTAAGCCAGACATAGTCCTGCCTAAGTACAAAACTGTC ATTTTTGTCCACGGCTGCTTCTGGCACCGCCATAAGGGGTGCAAATACGC TTACAATCCAAAGTCACGGGTAGATTTCTGGAAGAAGAAATTTGCATCAA ACGTGAAACGAGATATTACTGCAAGTAAGGAGTTGGAGTCGAATGGATGG AAAGTTATCATAATTTGGGAATGCGAGACTTCAGATATTGACGCACTGGC CCGTCTACTCAACGAGTCTATTCTTCACTCAATGCCTTATAAGCAATTTC ACAGAAGGCAGTCGCTATCTAAAAGTCTATGA
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig117686:122..553-

>mRNA_M-pyrifera_M_contig117686.3653.1 ID=mRNA_M-pyrifera_M_contig117686.3653.1|Name=mRNA_M-pyrifera_M_contig117686.3653.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=846bp|location=Sequence derived from alignment at M-pyrifera_M_contig117686:122..553- (Macrocystis pyrifera P11B4 male)
ATGTCGCGAATCAAAAATCGTGACACAAAGCCAGAATTAATTGTTCGATC
ACTGCTTCACAGAATGGGATATCGATTTCGGCTTCATCGAAAGGATTTAC
CTGGTAAGCCAGACATAGTCCTGCCTAAGTACAAAACTGTCATTTTTGTC
CACGGCTGCTTCTGGCACCGCCATAAGGGGTGCAAATACGCTTACAATCC
AAAGTCACGGGTAGATTTCTGGAAGAAGAAATTTGCATCAAACGTGAAAC
GAGATATTACTGCAAGTAAGGAGTTGGAGTCGAATGGATGGAAAGTTATC
ATAATTTGGGAATGCGAGACTTCAGATATTGACGCACTGGCCCGTCTACT
CAACGAGTCTATTCTTCACTCAATGCCTTATAAGCAATTTCACAGAAGGC
AGTCGCTATCTAAAAGTCTATGAATGTCGCGAATCAAAAATCGTGACACA
AAGCCAGAATTAATTGTTCGATCACTGCTTCACAGAATGGGATATCGATT
TCGGCTTCATCGAAAGGATTTACCTGGTAAGCCAGACATAGTCCTGCCTA
AGTACAAAACTGTCATTTTTGTCCACGGCTGCTTCTGGCACCGCCATAAG
GGGTGCAAATACGCTTACAATCCAAAGTCACGGGTAGATTTCTGGAAGAA
GAAATTTGCATCAAACGTGAAACGAGATATTACTGCAAGTAAGGAGTTGG
AGTCGAATGGATGGAAAGTTATCATAATTTGGGAATGCGAGACTTCAGAT
ATTGACGCACTGGCCCGTCTACTCAACGAGTCTATTCTTCACTCAATGCC
TTATAAGCAATTTCACAGAAGGCAGTCGCTATCTAAAAGTCTATGA
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