mRNA_M-pyrifera_M_contig117681.3651.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	mRNA_M-pyrifera_M_contig117681.3651.1
Unique Name	mRNA_M-pyrifera_M_contig117681.3651.1
Type	mRNA
Organism	Macrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))

Homology

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BLAST of mRNA_M-pyrifera_M_contig117681.3651.1 vs. uniprot
Match: A0A2E7K8S4_9PLAN (Uncharacterized protein n=5 Tax=Gimesia TaxID=1649453 RepID=A0A2E7K8S4_9PLAN)

HSP 1 Score: 226 bits (575), Expect = 6.150e-71
Identity = 118/118 (100.00%), Postives = 118/118 (100.00%), Query Frame = 1

Query:    1 FGRGLAIFLFCYILTLILFITFDYLCYTLLEFPILIGQIPYLLDPKTADDTLINIMLLMTTDPRVLAMLTAFILLVYPIGRLAWFFTYIDLRVRLDCWDMELRMTEVSENLTFKEVSL 354
            FGRGLAIFLFCYILTLILFITFDYLCYTLLEFPILIGQIPYLLDPKTADDTLINIMLLMTTDPRVLAMLTAFILLVYPIGRLAWFFTYIDLRVRLDCWDMELRMTEVSENLTFKEVSL
Sbjct:  189 FGRGLAIFLFCYILTLILFITFDYLCYTLLEFPILIGQIPYLLDPKTADDTLINIMLLMTTDPRVLAMLTAFILLVYPIGRLAWFFTYIDLRVRLDCWDMELRMTEVSENLTFKEVSL 306

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BLAST of mRNA_M-pyrifera_M_contig117681.3651.1 vs. uniprot
Match: A0A518AEP8_9PLAN (Uncharacterized protein n=3 Tax=Gimesia panareensis TaxID=2527978 RepID=A0A518AEP8_9PLAN)

HSP 1 Score: 208 bits (529), Expect = 5.510e-64
Identity = 107/118 (90.68%), Postives = 111/118 (94.07%), Query Frame = 1

Query:    1 FGRGLAIFLFCYILTLILFITFDYLCYTLLEFPILIGQIPYLLDPKTADDTLINIMLLMTTDPRVLAMLTAFILLVYPIGRLAWFFTYIDLRVRLDCWDMELRMTEVSENLTFKEVSL 354
            FGRGLA FLFCY LT ILFITFDYLCY LLEFPILIGQIPYLLDPKT D++L+NIMLLMTTDPRVL +LTAFILLVYPIGRL WFFTYIDLRVRLDCWDMELRMTEVSENLTFKEVSL
Sbjct:  189 FGRGLAAFLFCYTLTFILFITFDYLCYILLEFPILIGQIPYLLDPKTIDESLVNIMLLMTTDPRVLTVLTAFILLVYPIGRLTWFFTYIDLRVRLDCWDMELRMTEVSENLTFKEVSL 306

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BLAST of mRNA_M-pyrifera_M_contig117681.3651.1 vs. uniprot
Match: UPI0011A09E02 (hypothetical protein n=1 Tax=Gimesia chilikensis TaxID=2605989 RepID=UPI0011A09E02)

HSP 1 Score: 173 bits (438), Expect = 7.640e-51
Identity = 96/132 (72.73%), Postives = 107/132 (81.06%), Query Frame = 1

Query:    1 FGRGLAIFLFCYILTLILFITFDYLCYTLLEFPILIGQIPYLLDPKTADDTLIN--------------IMLLMTTDPRVLAMLTAFILLVYPIGRLAWFFTYIDLRVRLDCWDMELRMTEVSENLTFKEVSL 354
            FGRGLAIFLFCYILTLILFITFDYLCY LL+FPIL+GQ+   +D +  + ++++              I LL+TTDPRVL  LTAFILLVYPIGRLAWFFTYIDLRVRLDCWDMELRMTEVSENLTFKEVSL
Sbjct:  128 FGRGLAIFLFCYILTLILFITFDYLCYILLDFPILMGQLFNQIDVEIGEISILSFIVLIFQDPSVLWKIPLLITTDPRVLTTLTAFILLVYPIGRLAWFFTYIDLRVRLDCWDMELRMTEVSENLTFKEVSL 259

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BLAST of mRNA_M-pyrifera_M_contig117681.3651.1 vs. uniprot
Match: A0A517RNB0_9PLAN (Uncharacterized protein n=1 Tax=Gimesia alba TaxID=2527973 RepID=A0A517RNB0_9PLAN)

HSP 1 Score: 167 bits (424), Expect = 3.460e-48
Identity = 85/117 (72.65%), Postives = 98/117 (83.76%), Query Frame = 1

Query:    1 FGRGLAIFLFCYILTLILFITFDYLCYTLLEFPILIGQIPYLLDPKTADDTLINIMLLMTTDPRVLAMLTAFILLVYPIGRLAWFFTYIDLRVRLDCWDMELRMTEVSENLTFKEVS 351
            F RG   F FCY++TL+LFITFDYL Y LL+FPILIGQIP+L +    D++L NI+LLMTTDPRVL +LT FILLVYPIGRLAWFFTYIDLRVRLDCWDMELRMTEV++NL  +  S
Sbjct:  188 FARGFWTFFFCYVVTLVLFITFDYLSYKLLDFPILIGQIPFLFEMNNLDESLTNILLLMTTDPRVLTVLTGFILLVYPIGRLAWFFTYIDLRVRLDCWDMELRMTEVAQNLNSRGAS 304

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BLAST of mRNA_M-pyrifera_M_contig117681.3651.1 vs. uniprot
Match: A0A517VLJ1_9PLAN (Uncharacterized protein n=3 Tax=Planctomycetaceae TaxID=126 RepID=A0A517VLJ1_9PLAN)

HSP 1 Score: 162 bits (411), Expect = 3.160e-46
Identity = 83/118 (70.34%), Postives = 94/118 (79.66%), Query Frame = 1

Query:    1 FGRGLAIFLFCYILTLILFITFDYLCYTLLEFPILIGQIPYLLDPKTADDTLINIMLLMTTDPRVLAMLTAFILLVYPIGRLAWFFTYIDLRVRLDCWDMELRMTEVSENLTFKEVSL 354
            F RG   F FCYILT +LFITFDYLCYTLL+F ILIGQ+PY  DP    D + N +LL++TDPRVL + T FILL+YPIGRLAWFFTYIDLRVR DCWDMELRM EVS+ LT KE +L
Sbjct:  189 FWRGAWTFFFCYILTCVLFITFDYLCYTLLDFNILIGQMPYAFDPDNIGDPISNALLLISTDPRVLTVFTGFILLIYPIGRLAWFFTYIDLRVRYDCWDMELRMAEVSQRLTRKEAAL 306

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BLAST of mRNA_M-pyrifera_M_contig117681.3651.1 vs. uniprot
Match: A0A518IK55_9PLAN (Uncharacterized protein n=1 Tax=Gimesia fumaroli TaxID=2527976 RepID=A0A518IK55_9PLAN)

HSP 1 Score: 161 bits (408), Expect = 8.660e-46
Identity = 82/117 (70.09%), Postives = 95/117 (81.20%), Query Frame = 1

Query:    1 FGRGLAIFLFCYILTLILFITFDYLCYTLLEFPILIGQIPYLLDPKTADDTLINIMLLMTTDPRVLAMLTAFILLVYPIGRLAWFFTYIDLRVRLDCWDMELRMTEVSENLTFKEVS 351
            F RG   F FCY++TL+LFITFDYL Y LL++PILIGQIP+L +    D +L NI+LLMTTDPRVL +LT FILLVYPIGRLAWFFTYIDLRVRLDCWDMELRM EV++ L  +  S
Sbjct:  188 FSRGFWTFFFCYLMTLVLFITFDYLSYKLLDYPILIGQIPFLFEADNIDQSLTNILLLMTTDPRVLTVLTGFILLVYPIGRLAWFFTYIDLRVRLDCWDMELRMVEVAQKLNSRGTS 304

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BLAST of mRNA_M-pyrifera_M_contig117681.3651.1 vs. uniprot
Match: A0A517WPN1_9PLAN (Uncharacterized protein n=2 Tax=Gimesia aquarii TaxID=2527964 RepID=A0A517WPN1_9PLAN)

HSP 1 Score: 160 bits (405), Expect = 2.440e-45
Identity = 85/118 (72.03%), Postives = 95/118 (80.51%), Query Frame = 1

Query:    1 FGRGLAIFLFCYILTLILFITFDYLCYTLLEFPILIGQIPYLLDPKTADDTLINIMLLMTTDPRVLAMLTAFILLVYPIGRLAWFFTYIDLRVRLDCWDMELRMTEVSENLTFKEVSL 354
            F RGL  F FCY+LTLI F+TFDYL Y LLEFPI++G+IPYL D    D +L NI+LLMT+DPRVLA+LT FILLVYPIGRLAWFFTYIDLRV  DCWDMELRM EVS+NL   E  L
Sbjct:  188 FFRGLWSFFFCYVLTLIFFVTFDYLSYKLLEFPIVMGKIPYLFDIDAIDQSLSNILLLMTSDPRVLAVLTGFILLVYPIGRLAWFFTYIDLRVHRDCWDMELRMAEVSQNLKKGEALL 305

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BLAST of mRNA_M-pyrifera_M_contig117681.3651.1 vs. uniprot
Match: A6C1P1_9PLAN (Uncharacterized protein n=4 Tax=Gimesia TaxID=1649453 RepID=A6C1P1_9PLAN)

HSP 1 Score: 158 bits (400), Expect = 1.400e-44
Identity = 80/118 (67.80%), Postives = 93/118 (78.81%), Query Frame = 1

Query:    1 FGRGLAIFLFCYILTLILFITFDYLCYTLLEFPILIGQIPYLLDPKTADDTLINIMLLMTTDPRVLAMLTAFILLVYPIGRLAWFFTYIDLRVRLDCWDMELRMTEVSENLTFKEVSL 354
            F RG   F FCYILT +LFITFDYLCY LLEF ILIGQ+PY  DP    D + N +LL++TDPRVL + T FILL+YPIGR+AWFFTY+DLRVR DCWDMELRM EVS+ LT +E +L
Sbjct:  189 FWRGAWTFFFCYILTCVLFITFDYLCYILLEFNILIGQMPYAFDPDNIGDPISNALLLISTDPRVLTVFTGFILLIYPIGRVAWFFTYLDLRVRYDCWDMELRMAEVSQRLTRREAAL 306

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BLAST of mRNA_M-pyrifera_M_contig117681.3651.1 vs. uniprot
Match: A0A2E2BWA4_9PLAN (Uncharacterized protein n=3 Tax=Planctomycetaceae TaxID=126 RepID=A0A2E2BWA4_9PLAN)

HSP 1 Score: 158 bits (400), Expect = 1.400e-44
Identity = 82/118 (69.49%), Postives = 92/118 (77.97%), Query Frame = 1

Query:    1 FGRGLAIFLFCYILTLILFITFDYLCYTLLEFPILIGQIPYLLDPKTADDTLINIMLLMTTDPRVLAMLTAFILLVYPIGRLAWFFTYIDLRVRLDCWDMELRMTEVSENLTFKEVSL 354
            F RGL  F FCY+LT ILFITFDYLCYTLLE  ILIGQ+PY  DP    D + N +LL++TDPRVL +   FILL+YPIGRLAWFFTYIDLRVR DCWDMELRM EVS+ LT +E  L
Sbjct:  189 FWRGLWTFFFCYLLTCILFITFDYLCYTLLEINILIGQMPYAFDPDNIGDPISNALLLISTDPRVLTVFIGFILLIYPIGRLAWFFTYIDLRVRYDCWDMELRMNEVSQRLTRREAVL 306

[Close]

BLAST of mRNA_M-pyrifera_M_contig117681.3651.1 vs. uniprot
Match: A0A2E7K8I4_9PLAN (Uncharacterized protein n=6 Tax=Gimesia TaxID=1649453 RepID=A0A2E7K8I4_9PLAN)

HSP 1 Score: 117 bits (293), Expect = 4.180e-29
Identity = 61/66 (92.42%), Postives = 62/66 (93.94%), Query Frame = 3

Query:  354 MTASRIRFQSRVSPFLSLGILLLTPVFLAAQQENDYTDLSSPDQVMLKQDMQEILKRPEFRHLTRE 551
            MTASR+RFQSRVS  LSLGILLLTP FL AQQENDYTDLSSPDQVMLKQDMQEILKRPEFRHLTRE
Sbjct:    1 MTASRVRFQSRVSLILSLGILLLTPGFLTAQQENDYTDLSSPDQVMLKQDMQEILKRPEFRHLTRE 66

The following BLAST results are available for this feature:

BLAST of mRNA_M-pyrifera_M_contig117681.3651.1 vs. uniprot

BLAST of mRNA_M-pyrifera_M_contig117681.3651.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25


Match Name	E-value	Identity	Description
A0A2E7K8S4_9PLAN	6.150e-71	100.00	Uncharacterized protein n=5 Tax=Gimesia TaxID=1649...	[more]
A0A518AEP8_9PLAN	5.510e-64	90.68	Uncharacterized protein n=3 Tax=Gimesia panareensi...	[more]
UPI0011A09E02	7.640e-51	72.73	hypothetical protein n=1 Tax=Gimesia chilikensis T...	[more]
A0A517RNB0_9PLAN	3.460e-48	72.65	Uncharacterized protein n=1 Tax=Gimesia alba TaxID...	[more]
A0A517VLJ1_9PLAN	3.160e-46	70.34	Uncharacterized protein n=3 Tax=Planctomycetaceae ...	[more]
A0A518IK55_9PLAN	8.660e-46	70.09	Uncharacterized protein n=1 Tax=Gimesia fumaroli T...	[more]
A0A517WPN1_9PLAN	2.440e-45	72.03	Uncharacterized protein n=2 Tax=Gimesia aquarii Ta...	[more]
A6C1P1_9PLAN	1.400e-44	67.80	Uncharacterized protein n=4 Tax=Gimesia TaxID=1649...	[more]
A0A2E2BWA4_9PLAN	1.400e-44	69.49	Uncharacterized protein n=3 Tax=Planctomycetaceae ...	[more]
A0A2E7K8I4_9PLAN	4.180e-29	92.42	Uncharacterized protein n=6 Tax=Gimesia TaxID=1649...	[more]

Pages

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
M-pyrifera_M_contig117681	contig	M-pyrifera_M_contig117681:3..553 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90	2022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male	2021-02-24

Properties


Property Name	Value
Hectar predicted targeting category	signal anchor
Exons	1
Model size	551
Cds size	357
Stop	1
Start	0

Relationships

The following UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
1622815694.3380566-UTR-M-pyrifera_M_contig117681:2..196	1622815694.3380566-UTR-M-pyrifera_M_contig117681:2..196	Macrocystis pyrifera P11B4 male	UTR	M-pyrifera_M_contig117681 3..196 -
1692277525.2740922-UTR-M-pyrifera_M_contig117681:2..196	1692277525.2740922-UTR-M-pyrifera_M_contig117681:2..196	Macrocystis pyrifera P11B4 male	UTR	M-pyrifera_M_contig117681 3..196 -

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
1622815694.3483365-CDS-M-pyrifera_M_contig117681:196..553	1622815694.3483365-CDS-M-pyrifera_M_contig117681:196..553	Macrocystis pyrifera P11B4 male	CDS	M-pyrifera_M_contig117681 197..553 -
1692277525.2823792-CDS-M-pyrifera_M_contig117681:196..553	1692277525.2823792-CDS-M-pyrifera_M_contig117681:196..553	Macrocystis pyrifera P11B4 male	CDS	M-pyrifera_M_contig117681 197..553 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
mRNA_M-pyrifera_M_contig117681.3651.1	prot_M-pyrifera_M_contig117681.3651.1	Macrocystis pyrifera P11B4 male	polypeptide	M-pyrifera_M_contig117681 197..553 -

Sequences

The following sequences are available for this feature:

protein sequence
mRNA from alignment at M-pyrifera_M_contig117681:3..553-
coding sequence from alignment at M-pyrifera_M_contig117681:3..553-

protein sequence of mRNA_M-pyrifera_M_contig117681.3651.1

>prot_M-pyrifera_M_contig117681.3651.1 ID=prot_M-pyrifera_M_contig117681.3651.1|Name=mRNA_M-pyrifera_M_contig117681.3651.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=119bp
FGRGLAIFLFCYILTLILFITFDYLCYTLLEFPILIGQIPYLLDPKTADD
TLINIMLLMTTDPRVLAMLTAFILLVYPIGRLAWFFTYIDLRVRLDCWDM
ELRMTEVSENLTFKEVSL*

mRNA from alignment at M-pyrifera_M_contig117681:3..553-

Legend: polypeptideCDSUTR

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_M-pyrifera_M_contig117681.3651.1 ID=mRNA_M-pyrifera_M_contig117681.3651.1|Name=mRNA_M-pyrifera_M_contig117681.3651.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=551bp|location=Sequence derived from alignment at M-pyrifera_M_contig117681:3..553- (Macrocystis pyrifera P11B4 male)
TTTGGCCGGGGACTGGCGATCTTTCTCTTCTGCTACATCCTGACACTGAT
CCTGTTTATCACCTTCGACTACCTCTGCTACACCCTGCTGGAGTTCCCGA
TCCTGATTGGACAGATCCCATACCTGCTGGACCCGAAAACCGCCGATGAT
ACACTGATCAATATCATGCTGTTGATGACGACAGACCCCCGCGTGCTGGC
CATGCTGACGGCATTCATCCTGCTGGTCTATCCCATTGGCCGCCTGGCCT
GGTTCTTTACTTATATCGATCTGCGGGTGCGTCTGGACTGCTGGGATATG
GAACTCCGAATGACCGAAGTCTCTGAGAATCTGACATTCAAGGAGGTTTC
GTTATGACAGCCTCTCGAATACGCTTCCAGAGCAGAGTCTCCCCGTTTCT
CAGTCTGGGAATCCTCCTGCTGACCCCGGTGTTTCTCGCTGCACAGCAGG
AAAATGATTACACCGATCTGTCATCTCCTGACCAGGTGATGCTGAAGCAG
GACATGCAGGAGATTCTGAAACGGCCCGAATTTCGACATCTGACCCGCGA
A

Coding sequence (CDS) from alignment at M-pyrifera_M_contig117681:3..553-

>mRNA_M-pyrifera_M_contig117681.3651.1 ID=mRNA_M-pyrifera_M_contig117681.3651.1|Name=mRNA_M-pyrifera_M_contig117681.3651.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=714bp|location=Sequence derived from alignment at M-pyrifera_M_contig117681:3..553- (Macrocystis pyrifera P11B4 male)
TTTGGCCGGGGACTGGCGATCTTTCTCTTCTGCTACATCCTGACACTGAT
CCTGTTTATCACCTTCGACTACCTCTGCTACACCCTGCTGGAGTTCCCGA
TCCTGATTGGACAGATCCCATACCTGCTGGACCCGAAAACCGCCGATGAT
ACACTGATCAATATCATGCTGTTGATGACGACAGACCCCCGCGTGCTGGC
CATGCTGACGGCATTCATCCTGCTGGTCTATCCCATTGGCCGCCTGGCCT
GGTTCTTTACTTATATCGATCTGCGGGTGCGTCTGGACTGCTGGGATATG
GAACTCCGAATGACCGAAGTCTCTGAGAATCTGACATTCAAGGAGGTTTC
GTTATGATTTGGCCGGGGACTGGCGATCTTTCTCTTCTGCTACATCCTGA
CACTGATCCTGTTTATCACCTTCGACTACCTCTGCTACACCCTGCTGGAG
TTCCCGATCCTGATTGGACAGATCCCATACCTGCTGGACCCGAAAACCGC
CGATGATACACTGATCAATATCATGCTGTTGATGACGACAGACCCCCGCG
TGCTGGCCATGCTGACGGCATTCATCCTGCTGGTCTATCCCATTGGCCGC
CTGGCCTGGTTCTTTACTTATATCGATCTGCGGGTGCGTCTGGACTGCTG
GGATATGGAACTCCGAATGACCGAAGTCTCTGAGAATCTGACATTCAAGG
AGGTTTCGTTATGA