mRNA_M-pyrifera_M_contig117639.3643.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig117639.3643.1
Unique NamemRNA_M-pyrifera_M_contig117639.3643.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig117639.3643.1 vs. uniprot
Match: A0A2E7K609_9PLAN (Uncharacterized protein n=6 Tax=Gimesia TaxID=1649453 RepID=A0A2E7K609_9PLAN)

HSP 1 Score: 275 bits (703), Expect = 1.790e-85
Identity = 161/184 (87.50%), Postives = 162/184 (88.04%), Query Frame = 1
Query:    1 EEVYESSARPARKKTSSKGGKQKKQSGNSANSPVTLIAGIVAFVVMFFVSYTLVRSLMGGGEPEEIAQPHQELAPAGVTPAPAXXXVEEKAESEPPAKPMEIANTKPVSGQPAAKKATPAPTKXXXXXXXXQKWTSLVDPPLVTADWPESSRLKIDLKNAEEKLVVPSGSGPVVAVQYKNRSLY 552
            EEVYES ARP R            QSGNSANSPVTLIAGIVAFVVMFFVSYTLVRSLMGGGEPEEIAQPHQELAPAGVTPAPA   VEEKAE E PAKPMEIA +KPVSGQPA KKATPAPT XXXXXXXXQKWTSLVDPPLVTADWPESSRLKIDLKNAEEKLVVPSGSGPVVAVQYKNRSLY
Sbjct:   51 EEVYESPARPTRXXXXXXXXXXXXQSGNSANSPVTLIAGIVAFVVMFFVSYTLVRSLMGGGEPEEIAQPHQELAPAGVTPAPAPAPVEEKAEPETPAKPMEIAQSKPVSGQPAEKKATPAPTXXXXXXXXXQKWTSLVDPPLVTADWPESSRLKIDLKNAEEKLVVPSGSGPVVAVQYKNRSLY 234          
BLAST of mRNA_M-pyrifera_M_contig117639.3643.1 vs. uniprot
Match: A0A518ABF8_9PLAN (Uncharacterized protein n=3 Tax=Gimesia panareensis TaxID=2527978 RepID=A0A518ABF8_9PLAN)

HSP 1 Score: 133 bits (334), Expect = 9.760e-33
Identity = 87/158 (55.06%), Postives = 100/158 (63.29%), Query Frame = 1
Query:   85 SANSPVTLIAGIVAFVVMFFVSYTLVRSLMGGGEPEEIAQPH-QELAPAGVTPAPAXXXVEEKAESEPPAKPMEIANTKPVSGQ-PAAKKATPAPTKXXXXXXXXQKWTSLVDPPLVTADWPESSRLKIDLKNAEEKLVVPSGSGPVVAVQYKNRSLY 552
            S+NSPV ++ GI AF + FFVSY LVRSLMGGG+PE++ Q   QE+ P    PA AXXX                        Q PA   ATP P          Q+WTSLVDPPL+TADWPESSRLKIDLKNAEE+LVVPS S PVVAV YKNR+L+
Sbjct:   78 SSNSPVAIVVGICAFGLAFFVSYFLVRSLMGGGKPEQVVQQEPQEVIPEEAQPASAXXXXXXXXXXXXXXXXXXXXXXXXXXKQKPAPVNATPNPPSQPQ-----QQWTSLVDPPLITADWPESSRLKIDLKNAEEELVVPSSSSPVVAVHYKNRNLH 230          
BLAST of mRNA_M-pyrifera_M_contig117639.3643.1 vs. uniprot
Match: A0A518IHM2_9PLAN (Uncharacterized protein n=1 Tax=Gimesia fumaroli TaxID=2527976 RepID=A0A518IHM2_9PLAN)

HSP 1 Score: 86.7 bits (213), Expect = 1.830e-16
Identity = 75/240 (31.25%), Postives = 101/240 (42.08%), Query Frame = 1
Query:   10 YESSARPARKKTSSKGGKQKKQSGNSANSPVTLIAGIVAFVVMFFVSYTLVRSLMGGGEPEEIAQPH-------------QELAPAGVTPAPAXXXVEEKAESEPPAKPME-------------------------------------IANTKPVSGQPAAKKAT---------PAPTKXXXXXXXXQKWTSLVDPPLVTADWPESSRLKIDLKNAEEKLVVPSGSGPVVAVQYKNRSLY 552
            +E+  RP RKK  S G  +KK      NSP+ +IAG++AF V  + S T V  L G  E EE A P               +  PA  T +P     E  +   PP  P E                                     +A  K ++G+   K A          PAPT          KWTSLVDPPLV ADWPESS+L IDL+N + K ++P+   P + ++ + R +Y
Sbjct:   50 FEAPTRPTRKKKPS-GTSKKKNPEKKTNSPLNIIAGVIAFGVALYFSSTFVSGLFGKKEKEEAADPPAIVQNEADNSSIASDTKPATAT-SPQQASTEANSFGPPPLTPQERNAELTRLRKQMKVYSEAIKTATPEGRKDLLAKMETTLARVKELTGKSETKTAQSGNPGTPAKPAPT------VAPPKWTSLVDPPLVVADWPESSKLSIDLRNIDSKKLIPNSFSPFIGLRDRGREVY 281          
BLAST of mRNA_M-pyrifera_M_contig117639.3643.1 vs. uniprot
Match: A0A2D5GX66_9PLAN (Uncharacterized protein (Fragment) n=1 Tax=Gimesia sp. TaxID=2024833 RepID=A0A2D5GX66_9PLAN)

HSP 1 Score: 71.2 bits (173), Expect = 3.430e-11
Identity = 70/247 (28.34%), Postives = 106/247 (42.91%), Query Frame = 1
Query:    1 EEVYESSARPARKKTSSKGGKQKKQSGNSANSPVTLIAGIVAFVVMFFVSYTLVRSLMGGGEPEEIAQPHQELA--------------------------------PAGVTPAPAXXXVE----------------------EKAESEPPAKPME--IANTKPVSGQP------AAKKATPAPTKXXXXXXXX-QKWTSLVDPPLVTADWPESSRLKIDLKNAEEKLVVPSGSGPVVAVQYKNRSLY 552
            EE +ES  RP RKK +S    +  +S  S ++ V +IAG+ AFVV FF+SYT+V+ L  G + ++  QP   +A                                P   TP PA                           E +E E   + M+  +A  K ++G+       A KK+   P K         Q W+SLVDPPLV ADW ++  L IDL+N +   ++P+   P +  + +NR+ +
Sbjct:   48 EEDFESPVRPTRKKKTSARTSKXXKSAESGSNLVGIIAGVGAFVVAFFISYTVVKGLFPGNDKQD--QPADAVAEQQPGAAGEEAPAETVASNATATSQQTSTVDAPVDTTPIPADPQARTEELNRLRKQMSAYSETMKTTTEASEREAIVEKMKTTLARIKLITGKQKEEVAAAQKKSGSKPEKTASTPTQANQLWSSLVDPPLVVADWSDTPELSIDLRNIDSHRLIPNSFSPFMGFRDRNRNFF 292          
BLAST of mRNA_M-pyrifera_M_contig117639.3643.1 vs. uniprot
Match: A0A517RKN4_9PLAN (Uncharacterized protein n=1 Tax=Gimesia alba TaxID=2527973 RepID=A0A517RKN4_9PLAN)

HSP 1 Score: 71.2 bits (173), Expect = 3.940e-11
Identity = 38/85 (44.71%), Postives = 50/85 (58.82%), Query Frame = 1
Query:  304 IANTKPVSGQPAAKKATPAPTKXXXXXXXX--QKWTSLVDPPLVTADWPESSRLKIDLKNAEEKLVVPSGSGPVVAVQYKNRSLY 552
            +A  K ++G+   K A  A T           QKWTSLVD P V A+WPESS+LKIDLKN EE+L+ P+   P V ++ +N   Y
Sbjct:  196 LARVKELTGKDETKTAATAGTSTPAKPAQVNSQKWTSLVDAPPVVAEWPESSKLKIDLKNMEEELITPNSFSPFVGIRQRNHKFY 280          
BLAST of mRNA_M-pyrifera_M_contig117639.3643.1 vs. uniprot
Match: A6C4V8_9PLAN (Uncharacterized protein n=5 Tax=Planctomycetaceae TaxID=126 RepID=A6C4V8_9PLAN)

HSP 1 Score: 67.4 bits (163), Expect = 8.430e-10
Identity = 69/246 (28.05%), Postives = 104/246 (42.28%), Query Frame = 1
Query:    1 EEVYESSARPARKKTSSKGGKQKKQSGNSANSPVTLIAGIVAFVVMFFVSYTLVRSLMGGGEPEEI---AQPHQELAPAGVTPAPAXXXVEEKAESEPPAKPMEI-ANTKPVSGQPAAK----------------------------------KATPAPTKXXXXXXXX------------------------QKWTSLVDPPLVTADWPESSRLKIDLKNAEEKLVVPSGSGPVVAVQYKNRSLY 552
            EE +ES  RP RKK +S    +  +S  S ++ V +IAG+ AFVV FF+SYT+V+ L  G + ++    A   Q+   AG   APA         + P    ++   +T P+   P A+                                  K T A  K     XXX                        Q W+SLVDPPLV ADW ++ +L IDL+N +   ++P+   P +  + +NR+ +
Sbjct:   48 EEDFESPVRPTRKKKTSARTSKXXKSAESGSNLVGIIAGVGAFVVAFFISYTVVKGLFPGNDKQDQPADAVAEQQPGAAGEE-APAETVASNATATSPQTSTVDAPVDTTPIPADPQARTEELNRLRKQMTAYSETMKTTTEASEREAIVEKMKTTLARIKLITGKXXXXXXXXXXXXXXXXXXXXXTPKQANQPWSSLVDPPLVVADWSDTPKLSIDLRNIDSHRLIPNSFSPFMGFRDRNRNFF 292          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig117639.3643.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 6
Match NameE-valueIdentityDescription
A0A2E7K609_9PLAN1.790e-8587.50Uncharacterized protein n=6 Tax=Gimesia TaxID=1649... [more]
A0A518ABF8_9PLAN9.760e-3355.06Uncharacterized protein n=3 Tax=Gimesia panareensi... [more]
A0A518IHM2_9PLAN1.830e-1631.25Uncharacterized protein n=1 Tax=Gimesia fumaroli T... [more]
A0A2D5GX66_9PLAN3.430e-1128.34Uncharacterized protein (Fragment) n=1 Tax=Gimesia... [more]
A0A517RKN4_9PLAN3.940e-1144.71Uncharacterized protein n=1 Tax=Gimesia alba TaxID... [more]
A6C4V8_9PLAN8.430e-1028.05Uncharacterized protein n=5 Tax=Planctomycetaceae ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig117639contigM-pyrifera_M_contig117639:2..553 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeBacteria
Seed ortholog score71.2
Seed ortholog evalue5.5e-10
Seed eggNOG ortholog344747.PM8797T_20533
Preferred nametolB
Hectar predicted targeting categorysignal anchor
EggNOG free text desc.COG2319 FOG WD40 repeat
EggNOG OGs2J1AE@203682,COG0823@1,COG0823@2
COG Functional cat.U
Best tax levelPlanctomycetes
Best eggNOG OGNA|NA|NA
Exons1
Model size552
Cds size552
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815694.039139-CDS-M-pyrifera_M_contig117639:1..5531622815694.039139-CDS-M-pyrifera_M_contig117639:1..553Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig117639 2..553 +
1692277525.1418774-CDS-M-pyrifera_M_contig117639:1..5531692277525.1418774-CDS-M-pyrifera_M_contig117639:1..553Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig117639 2..553 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig117639.3643.1prot_M-pyrifera_M_contig117639.3643.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig117639 2..553 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig117639.3643.1

>prot_M-pyrifera_M_contig117639.3643.1 ID=prot_M-pyrifera_M_contig117639.3643.1|Name=mRNA_M-pyrifera_M_contig117639.3643.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=184bp
EEVYESSARPARKKTSSKGGKQKKQSGNSANSPVTLIAGIVAFVVMFFVS
YTLVRSLMGGGEPEEIAQPHQELAPAGVTPAPAPAPVEEKAESEPPAKPM
EIANTKPVSGQPAAKKATPAPTKPKPQPEPEQKWTSLVDPPLVTADWPES
SRLKIDLKNAEEKLVVPSGSGPVVAVQYKNRSLY
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mRNA from alignment at M-pyrifera_M_contig117639:2..553+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig117639.3643.1 ID=mRNA_M-pyrifera_M_contig117639.3643.1|Name=mRNA_M-pyrifera_M_contig117639.3643.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=552bp|location=Sequence derived from alignment at M-pyrifera_M_contig117639:2..553+ (Macrocystis pyrifera P11B4 male)
GAGGAAGTCTACGAGAGCTCGGCGAGGCCGGCACGTAAAAAGACGTCATC CAAAGGGGGCAAACAGAAAAAGCAGTCAGGGAACAGCGCCAATTCGCCGG TGACCCTGATTGCTGGTATTGTGGCCTTCGTGGTGATGTTCTTTGTCTCT TATACACTGGTCCGTTCCCTGATGGGAGGGGGAGAACCGGAAGAGATCGC ACAGCCGCACCAGGAACTGGCTCCCGCTGGAGTGACACCAGCGCCCGCTC CCGCGCCTGTTGAGGAAAAAGCCGAGTCAGAACCACCGGCGAAACCGATG GAGATCGCGAACACCAAGCCGGTGAGCGGTCAACCGGCGGCGAAGAAAGC GACGCCGGCTCCCACGAAACCGAAACCCCAGCCGGAACCGGAGCAGAAGT GGACCTCCCTCGTCGATCCGCCGCTGGTGACCGCGGACTGGCCGGAATCG TCACGCTTGAAAATTGACCTGAAGAATGCGGAAGAGAAACTGGTGGTGCC CAGCGGGTCCGGCCCGGTGGTTGCCGTGCAGTATAAGAACCGCAGTCTCT AT
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig117639:2..553+

>mRNA_M-pyrifera_M_contig117639.3643.1 ID=mRNA_M-pyrifera_M_contig117639.3643.1|Name=mRNA_M-pyrifera_M_contig117639.3643.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=1104bp|location=Sequence derived from alignment at M-pyrifera_M_contig117639:2..553+ (Macrocystis pyrifera P11B4 male)
GAGGAAGTCTACGAGAGCTCGGCGAGGCCGGCACGTAAAAAGACGTCATC
CAAAGGGGGCAAACAGAAAAAGCAGTCAGGGAACAGCGCCAATTCGCCGG
TGACCCTGATTGCTGGTATTGTGGCCTTCGTGGTGATGTTCTTTGTCTCT
TATACACTGGTCCGTTCCCTGATGGGAGGGGGAGAACCGGAAGAGATCGC
ACAGCCGCACCAGGAACTGGCTCCCGCTGGAGTGACACCAGCGCCCGCTC
CCGCGCCTGTTGAGGAAAAAGCCGAGTCAGAACCACCGGCGAAACCGATG
GAGATCGCGAACACCAAGCCGGTGAGCGGTCAACCGGCGGCGAAGAAAGC
GACGCCGGCTCCCACGAAACCGAAACCCCAGCCGGAACCGGAGCAGAAGT
GGACCTCCCTCGTCGATCCGCCGCTGGTGACCGCGGACTGGCCGGAATCG
TCACGCTTGAAAATTGACCTGAAGAATGCGGAAGAGAAACTGGTGGTGCC
CAGCGGGTCCGGCCCGGTGGTTGCCGTGCAGTATAAGAACCGCAGTCTCT
ATGAGGAAGTCTACGAGAGCTCGGCGAGGCCGGCACGTAAAAAGACGTCA
TCCAAAGGGGGCAAACAGAAAAAGCAGTCAGGGAACAGCGCCAATTCGCC
GGTGACCCTGATTGCTGGTATTGTGGCCTTCGTGGTGATGTTCTTTGTCT
CTTATACACTGGTCCGTTCCCTGATGGGAGGGGGAGAACCGGAAGAGATC
GCACAGCCGCACCAGGAACTGGCTCCCGCTGGAGTGACACCAGCGCCCGC
TCCCGCGCCTGTTGAGGAAAAAGCCGAGTCAGAACCACCGGCGAAACCGA
TGGAGATCGCGAACACCAAGCCGGTGAGCGGTCAACCGGCGGCGAAGAAA
GCGACGCCGGCTCCCACGAAACCGAAACCCCAGCCGGAACCGGAGCAGAA
GTGGACCTCCCTCGTCGATCCGCCGCTGGTGACCGCGGACTGGCCGGAAT
CGTCACGCTTGAAAATTGACCTGAAGAATGCGGAAGAGAAACTGGTGGTG
CCCAGCGGGTCCGGCCCGGTGGTTGCCGTGCAGTATAAGAACCGCAGTCT
CTAT
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