mRNA_M-pyrifera_M_contig117592.3635.1 (mRNA) Macrocystis pyrifera P11B4 male
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Overview
Homology
BLAST of mRNA_M-pyrifera_M_contig117592.3635.1 vs. uniprot
Match: A0A7S4P577_9EUKA (Hypothetical protein n=1 Tax=Paramoeba aestuarina TaxID=180227 RepID=A0A7S4P577_9EUKA) HSP 1 Score: 102 bits (255), Expect = 8.600e-24 Identity = 60/184 (32.61%), Postives = 100/184 (54.35%), Query Frame = 1
Query: 1 TNRTVFVLSRNCQGLTSLDLSFCEGIDDAALRQLPVGFPLLRSLFLEEIPNLSATALAALGGCHKLEELKLAYCAGTDDSVLAQLGQGCPMLRSVDLSNCPKITMPAVSDAVLRWPHLHTLALKGMATLTTQSFAHPELRRLVLSWSKNLEDPAINGIAQGCPRLEDIDLAWCSKLTGNAVHKL 552
T+R++ L+R+C+ LTSLD+S+C+G+ D + QL G L+ L L E+ +T A C L + L+ + +D L QL GCP L ++D+ +C IT+ ++ A+ L L ++ + + ++ HP+L L +S+ K L + A C L +DLAWCSK+ V++L
Sbjct: 9 TDRSLVALARHCRKLTSLDVSWCDGVTDDGILQLRDGTRSLKHLNLGELRFRPSTVSALAARCGWLRSVILSDTS-MEDEALFQLATGCPRLTNLDVGSCQGITIMGLNRALSLLQDLRILRVQWLECINSEGLIHPKLEVLDMSFCKYLTREGLLMTAGRCVSLVHVDLAWCSKVADGEVYEL 191
BLAST of mRNA_M-pyrifera_M_contig117592.3635.1 vs. uniprot
Match: C3XX63_BRAFL (F-box domain-containing protein n=1 Tax=Branchiostoma floridae TaxID=7739 RepID=C3XX63_BRAFL) HSP 1 Score: 61.6 bits (148), Expect = 7.460e-8 Identity = 46/174 (26.44%), Postives = 78/174 (44.83%), Query Frame = 1
Query: 1 TNRTVFVLSRNCQGLTSLDLSFCEGIDDAALRQLPVGFPLLRSLFLEEIPNLSATALAALGGCHKLEELKLAYCAGTDDSVLAQLGQGCPMLRSVDLSNCPKITMPAVSDAVLRWPHLHTLALKGM-----ATLTTQSFAHPELRRLVLSWSKNLEDPAINGIAQGCPRLEDID 507
T+ ++ ++ +C L LD+SFCEG+ D +++ +P+ ++ LF E LGG L L L C ++ V+ ++ + C LR + L C IT + + +LH L L G+ A LT A P L L L ++D ++ + L +D
Sbjct: 340 TDASIAAVTDSCSQLELLDISFCEGVTDYSVQNIPLSTAVMLHLFRSE----------TLGG---LTYLNLTECTAVNNGVVGRIAKCCLALRELHLCWCWDITEEGLEHIINNLSNLHHLDLTGLDKITGACLTKVPSALPHLTFLNLQQCNTVQDEVLSTLVAMVTDLTIVD 500
BLAST of mRNA_M-pyrifera_M_contig117592.3635.1 vs. uniprot
Match: A0A8B8DJL8_CRAVI (F-box/LRR-repeat protein 2-like n=1 Tax=Crassostrea virginica TaxID=6565 RepID=A0A8B8DJL8_CRAVI) HSP 1 Score: 60.1 bits (144), Expect = 2.500e-7 Identity = 52/174 (29.89%), Postives = 82/174 (47.13%), Query Frame = 1
Query: 1 TNRTVFVLSRNCQGLTSLDLSFCEGIDDAALRQLPVGFPLLRSLFLEEIPNLSATALAALGGCHKLEEL-KLAYCAGTD--DSVLAQLGQGC-PMLRSVDLSNCPKITMPAVSDAVLRWPHLHTLALKGMATLTTQSFAH-----PELRRLVLSWSKNLEDPAINGIAQGCPRL 495
T+R++ ++R C L L +SFCEG+ D ALR + LR+L + + N S L +L C + L +L + T D + Q+ + C P LR++ LS C I+ P + V +L L + G+ +T F P+LR L L + D I + + P L
Sbjct: 303 TDRSIHYIAR-CTNLCKLQISFCEGLSDQALRYIQT-LQKLRNLKMRKGLNFSTEGLLSLFSCQSMAGLVELDFSENTQFVDDCVMQMTKCCGPRLRNLALSWCWDISDPGIISIVDHCRNLEVLDIIGLHKITGTYFIRIPEDMPKLRLLNLQQCNRIIDELIEDVIRKKPDL 474
BLAST of mRNA_M-pyrifera_M_contig117592.3635.1 vs. uniprot
Match: A0A162V731_PHYB8 (Uncharacterized protein n=1 Tax=Phycomyces blakesleeanus (strain ATCC 8743b / DSM 1359 / FGSC 10004 / NBRC 33097 / NRRL 1555) TaxID=763407 RepID=A0A162V731_PHYB8) HSP 1 Score: 57.8 bits (138), Expect = 1.470e-6 Identity = 49/173 (28.32%), Postives = 78/173 (45.09%), Query Frame = 1
Query: 40 GLTSLDLSFCEGIDDAALRQLPVGFPLLRSLFLEEIPNLSATALAALGG-CHKLEELKLAYCAGTDDSVLAQLGQGCPM-LRSVDLSNCPKITMPAVSDAVLRWPHLHTLALKGMATLTTQSFAHPELRRLVLSWSKNLEDPAINGIAQGCPRLEDIDLAWCSKLTGNAVHKL 552
G+ +LD+S+C+ ++ A L QL P LRS+ L+ + + + AL C KLE + L C D+ L L + LRS+DLS C +IT + LHTL L + PE+ +S N + L +D++ C+ L G+ + K+
Sbjct: 144 GVETLDISYCDHMNQAILMQLADALPALRSIVLDGLKCQISRGVDALSDRCDKLETISLKSCPTLSDNCLVSLAKFRKHHLRSLDLSGCRQITNKGLMLTAKYNIKLHTLLLANTS-------CSPEIVLEFVSGPLNRK------------YLRQLDISNCANLNGSQLIKV 297
BLAST of mRNA_M-pyrifera_M_contig117592.3635.1 vs. uniprot
Match: UPI00160192BD (uncharacterized protein LOC118419265 n=1 Tax=Branchiostoma floridae TaxID=7739 RepID=UPI00160192BD) HSP 1 Score: 57.8 bits (138), Expect = 1.730e-6 Identity = 49/180 (27.22%), Postives = 80/180 (44.44%), Query Frame = 1
Query: 1 TNRTVFVLSRNCQGLTSLDLSFCEGIDDAALRQLPVGFPLLRSLFLEEIPNLSATALA------ALGGCHKLEELKLAYCAGTDDSVLAQLGQGCPMLRSVDLSNCPKITMPAVSDAVLRWPHLHTLALKGM-----ATLTTQSFAHPELRRLVLSWSKNLEDPAINGIAQGCPRLEDID 507
T+ ++ ++ +C L LD+SFCEG+ D +++ +P LR L L+ LS + LGG L L L C ++ V+ ++ + C LR + L C IT + + +LH L L G+ A LT A P L L L ++D ++ + L +D
Sbjct: 629 TDASIAAVTDSCSQLELLDISFCEGVTDYSVQNIP-RLQHLRHLRLKRGFQLSTAVMLHLFRSETLGG---LTYLNLTECTAVNNGVVGRIAKCCLALRELHLCWCWDITEEGLEHIINNLSNLHHLDLTGLDKITGACLTKVPSALPHLTFLNLQQCNTVQDEVLSTLVAMVTDLTIVD 804
BLAST of mRNA_M-pyrifera_M_contig117592.3635.1 vs. uniprot
Match: A0A8B8QCG4_9MYRT (F-box/LRR-repeat protein 3 n=1 Tax=Rhodamnia argentea TaxID=178133 RepID=A0A8B8QCG4_9MYRT) HSP 1 Score: 57.0 bits (136), Expect = 3.050e-6 Identity = 54/185 (29.19%), Postives = 77/185 (41.62%), Query Frame = 1
Query: 34 CQGLTSLDLSFCEGIDDAALRQL---PVGFPLLRSLFLEEIPNLSATALAALGGCHKLEELKLAYCAGTDDSVLAQLGQGCPMLRSVDLSNCPKITMPAVSDAVLRWPHLHTLALKGMATLTTQSFAHPELRRLVLSWSKNLEDPAINGIA---------QGCPRLEDIDLAWCSKLTGNAVHKL 552
C L + L +C I D + L VG L +L+ N +L ++G KLE L L C+ DD+ L LG GCP+LR +D+S C I+ + V H + + L +LT S + L W KNL I+G C L +I L C +T + L
Sbjct: 186 CGRLEKVSLKWCMEISDLGVDLLCKKSVGLKFLDLSYLKVTNN----SLRSIGSLPKLEVLALVGCSLIDDAGLQFLGDGCPLLRVIDMSRCNGISSSGLVSVVKG--HEYLVHLNASCSLTECSSS---LLHCFKDW-KNLNTIKIDGARVSDSVLKTLSNCTALVEIGLGKCIGVTNLGLMHL 360
BLAST of mRNA_M-pyrifera_M_contig117592.3635.1 vs. uniprot
Match: A0A3S3NG43_9MAGN (F-box/LRR-repeat protein 3-like protein isoform X1 n=1 Tax=Cinnamomum micranthum f. kanehirae TaxID=337451 RepID=A0A3S3NG43_9MAGN) HSP 1 Score: 56.2 bits (134), Expect = 5.550e-6 Identity = 49/181 (27.07%), Postives = 85/181 (46.96%), Query Frame = 1
Query: 88 ALRQLPVGFPLLRSLFLEEIPNLSATALAALG-GCHKLEELKLAYCAGTDDSVLAQLGQGCPMLRSVDLSNCPKITMPAVSDAVLRWPHLHTLALKGMATLTTQSFAHPELRRLVLS-------------------------WSKNLEDPAINGIAQGCPRLEDIDLAWCSKLTGNAVHKL 552
AL V P L+ + L+ +++ + L A+G GC LEEL L+ C+G D L+ L L+ +D++ C KIT +VS + +L +L ++ + ++ ++F R +L S + D I IAQGCP L+ I+LA+C ++ +++ L
Sbjct: 293 ALATSLVKLPKLQVIKLDSC-HVTCSGLKAIGKGCISLEELSLSKCSGVTDEGLSFLVTKHKGLKKLDITCCTKITDISVSS-ITSCSNLTSLKMESCSLVSKEAFVLIGQRCHLLEELDLTENEIDNEGFSIDLPFVNIKIQSVGITDCGIAAIAQGCPMLQIINLAYCKDISDDSLRSL 471
BLAST of mRNA_M-pyrifera_M_contig117592.3635.1 vs. uniprot
Match: L8H8Y6_ACACA (Leucine rich repeat domain containing protein n=1 Tax=Acanthamoeba castellanii str. Neff TaxID=1257118 RepID=L8H8Y6_ACACA) HSP 1 Score: 55.1 bits (131), Expect = 1.020e-5 Identity = 56/199 (28.14%), Postives = 92/199 (46.23%), Query Frame = 1
Query: 1 TNRTVFVLSRNCQGLTSLDLSFCEGIDDAALRQLPVGFPLLRSLFLEEIPNLSATALAAL-GGCHKLEELKLAYCAGTDDSVLAQLGQG----CPMLRSVDLSNCPKITMPAVSDAVLRWPHLHTLALKGMATL------TTQSFAHPELRRLVLSWSKNLEDPAINGI----AQGCPRLEDIDLAWCSKLTGNAVHKL 552
T+ V + ++C L +L C I DAALR + P LR+L L + ++ + + L +L+ L ++ C + +LG G LR +D+S I A++D R+P L L L+ + + T S P L L LSW+ ++ D + + A CPRLE++ L C K+T + + L
Sbjct: 55 TSADVGAILKSCPQLQALHFEGCR-IADAALRAIIAANPPLRALNLRDCKMVTDSGMKDLFAHFAQLQYLNVSGCK------IQRLGIGEAESQDSLRLLDISRTT-IRGEALTDIAKRFPRLFHLNLEECSQVNEAWLKTCFSSPCPALTSLNLSWNSSVTDDCLESVTKLVATHCPRLENLQLEQCYKITDHCLTLL 245
BLAST of mRNA_M-pyrifera_M_contig117592.3635.1 vs. uniprot
Match: A0A7S0VYA1_9CRYP (Hypothetical protein (Fragment) n=1 Tax=Hemiselmis tepida TaxID=464990 RepID=A0A7S0VYA1_9CRYP) HSP 1 Score: 52.0 bits (123), Expect = 1.700e-5 Identity = 32/96 (33.33%), Postives = 53/96 (55.21%), Query Frame = 1
Query: 19 VLSRNCQGLTSLDLSFCEGIDDAALRQLPVGFPLLRSLFLEEIPNLSATALAALGGC--HKLEELKLAYCAGTDDSVLAQLGQGCPMLRSVDLSNC 300
+ +R LTSLDLSF +G+ D + + P L SL LE+ P ++ +L AL GC L +L LA+C ++ + + C LR+++++ C
Sbjct: 20 IAARLKTSLTSLDLSFLDGVTDDGVELIAQLCPRLSSLSLEQSPQVTDRSLGALSGCLGTTLRDLNLAFCHLVGEAAVLRTYTTCK-LRNLNVTQC 114
BLAST of mRNA_M-pyrifera_M_contig117592.3635.1 vs. uniprot
Match: A0A8J9ZBW4_BRALA (FBXL20 protein n=1 Tax=Branchiostoma lanceolatum TaxID=7740 RepID=A0A8J9ZBW4_BRALA) HSP 1 Score: 54.3 bits (129), Expect = 2.660e-5 Identity = 34/122 (27.87%), Postives = 60/122 (49.18%), Query Frame = 1
Query: 37 QGLTSLDLSFCEGIDDAALRQLPVGFPLLRSLFLEEIPNLSATALAALGGCHKLEELKLAYCAGTDDSVLAQLGQGCPMLRSVDLSNCPKITMPAVSDAVLRWPHLHTLALKGMATLTTQSF 402
+GLT LDLS+CE I D+ L + L+ L L + + + T + C +L L ++ G D VL + + +L +D+S +T ++S ++ P L L G+ +T++ F
Sbjct: 624 EGLTCLDLSWCEEITDSGLSCVVGACRNLQQLSLRQCLSTAHTLVRLGENCRQLRSLMMSGVEGMTDGVLVSMAENLGLLEELDVSWNLDLTDLSISRVLVCCPRLRDARLAGLKRITSKPF 745 The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig117592.3635.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90) Total hits: 16
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_M-pyrifera_M_contig117592.3635.1 >prot_M-pyrifera_M_contig117592.3635.1 ID=prot_M-pyrifera_M_contig117592.3635.1|Name=mRNA_M-pyrifera_M_contig117592.3635.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=184bp TNRTVFVLSRNCQGLTSLDLSFCEGIDDAALRQLPVGFPLLRSLFLEEIPback to top mRNA from alignment at M-pyrifera_M_contig117592:1..552- Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_M-pyrifera_M_contig117592.3635.1 ID=mRNA_M-pyrifera_M_contig117592.3635.1|Name=mRNA_M-pyrifera_M_contig117592.3635.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=552bp|location=Sequence derived from alignment at M-pyrifera_M_contig117592:1..552- (Macrocystis pyrifera P11B4 male)back to top Coding sequence (CDS) from alignment at M-pyrifera_M_contig117592:1..552- >mRNA_M-pyrifera_M_contig117592.3635.1 ID=mRNA_M-pyrifera_M_contig117592.3635.1|Name=mRNA_M-pyrifera_M_contig117592.3635.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=1104bp|location=Sequence derived from alignment at M-pyrifera_M_contig117592:1..552- (Macrocystis pyrifera P11B4 male)back to top |