mRNA_M-pyrifera_M_contig11752.3630.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig11752.3630.1
Unique NamemRNA_M-pyrifera_M_contig11752.3630.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig11752.3630.1 vs. uniprot
Match: U9VT72_9CYAN (Glutaminase n=1 Tax=Leptolyngbya sp. Heron Island J TaxID=1385935 RepID=U9VT72_9CYAN)

HSP 1 Score: 52.0 bits (123), Expect = 1.200e-5
Identity = 27/69 (39.13%), Postives = 43/69 (62.32%), Query Frame = 1 
Query:   34 AAIEGRAEEMSLLISHGLEIDAVNEDGNTALHLASRHGMVEVSQRLAEAFPDEEIQNRRGFTALDEAIQ 240
            AA +G+   M   I+ G+ ++A + DG TA+HLA+  G ++V + L     +  IQ+R GFT LD+AI+
Sbjct:  581 AASQGKLNAMLPYIARGVSMEAADYDGRTAIHLAAAEGQLKVVKFLLANNVNPNIQDRWGFTPLDDAIR 649
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BLAST of mRNA_M-pyrifera_M_contig11752.3630.1 vs. uniprot
Match: A0A6I5PH59_9CYAN (Glutaminase n=1 Tax=Leptolyngbya sp. SIOISBB TaxID=2607771 RepID=A0A6I5PH59_9CYAN)

HSP 1 Score: 51.2 bits (121), Expect = 2.240e-5
Identity = 27/69 (39.13%), Postives = 41/69 (59.42%), Query Frame = 1 
Query:   34 AAIEGRAEEMSLLISHGLEIDAVNEDGNTALHLASRHGMVEVSQRLAEAFPDEEIQNRRGFTALDEAIQ 240
            AA +G    M   I+ G+ +DA + DG TA+HLA+  G + V + L     +  +Q+R GFT LD+AI+
Sbjct:  588 AASQGNLIAMLPYIARGIPMDAADYDGRTAIHLAASEGQLNVIEFLLANKVNPNVQDRWGFTPLDDAIR 656
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BLAST of mRNA_M-pyrifera_M_contig11752.3630.1 vs. uniprot
Match: UPI00194DD4C7 (ankyrin repeat domain-containing protein n=1 Tax=Amycolatopsis sp. FDAARGOS 1241 TaxID=2778070 RepID=UPI00194DD4C7)

HSP 1 Score: 49.3 bits (116), Expect = 2.480e-5
Identity = 25/67 (37.31%), Postives = 40/67 (59.70%), Query Frame = 1 
Query:   37 AIEGRAEEMSLLISHGLEIDAVNEDGNTALHLASRHGMVEVSQRLAEAFPDEEIQNRRGFTALDEAI 237
            A +G   E++  I HGLE++A++E GN+ L LA+ HG +E  + L     D ++ N RG T +  A+
Sbjct:   26 ARDGNTNELADFIEHGLEVNALDEAGNSLLMLAAYHGRLETVRYLLSKGADPDLCNARGQTPIAGAL 92
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BLAST of mRNA_M-pyrifera_M_contig11752.3630.1 vs. uniprot
Match: UPI001E6760F8 (uncharacterized protein LOC123762007 n=1 Tax=Procambarus clarkii TaxID=6728 RepID=UPI001E6760F8)

HSP 1 Score: 49.7 bits (117), Expect = 4.180e-5
Identity = 25/56 (44.64%), Postives = 36/56 (64.29%), Query Frame = 1 
Query:   61 MSLLISHGLEIDAVNEDGNTALHLASRHGMVEVSQRLAEAFPDEEIQNRRGFTALD 228
            +SLL+ H  EI+AV+ +GNTALH+A   G VE    L +  PD  ++N +  TA+D
Sbjct:    2 ISLLMDHSAEINAVDPEGNTALHVAVEAGRVEAVYGLLKFCPDLSLRNSQNKTAID 57
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BLAST of mRNA_M-pyrifera_M_contig11752.3630.1 vs. uniprot
Match: R7UVK8_CAPTE (Uncharacterized protein (Fragment) n=1 Tax=Capitella teleta TaxID=283909 RepID=R7UVK8_CAPTE)

HSP 1 Score: 47.0 bits (110), Expect = 4.620e-5
Identity = 23/56 (41.07%), Postives = 35/56 (62.50%), Query Frame = 1 
Query:   67 LLISHGLEIDAVNEDGNTALHLASRHGMVEVSQRLAEAFPDEEIQNRRGFTALDEA 234
            LLI +G +++AV+ DGN ALH A+  G+V  +++L     D  ++N  G TAL  A
Sbjct:    4 LLIEYGADVNAVDGDGNRALHWAAAKGIVCATEKLLSNHADPNLKNNEGDTALHSA 59
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BLAST of mRNA_M-pyrifera_M_contig11752.3630.1 vs. uniprot
Match: R7V632_CAPTE (Uncharacterized protein (Fragment) n=1 Tax=Capitella teleta TaxID=283909 RepID=R7V632_CAPTE)

HSP 1 Score: 47.8 bits (112), Expect = 6.180e-5
Identity = 24/55 (43.64%), Postives = 34/55 (61.82%), Query Frame = 1 
Query:   61 MSLLISHGLEIDAVNEDGNTALHLASRHGMVEVSQRLAEAFPDEEIQNRRGFTAL 225
            + LLI  G EID V +DG+TALH+A+  G V   ++L E   D   +N RG+T+ 
Sbjct:   47 VDLLIEAGAEIDMVEKDGDTALHIATNTGNVWAVKKLLEHSADPNKKNNRGYTSF 101
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig11752.3630.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 6
Match NameE-valueIdentityDescription
U9VT72_9CYAN1.200e-539.13Glutaminase n=1 Tax=Leptolyngbya sp. Heron Island ... [more]
A0A6I5PH59_9CYAN2.240e-539.13Glutaminase n=1 Tax=Leptolyngbya sp. SIOISBB TaxID... [more]
UPI00194DD4C72.480e-537.31ankyrin repeat domain-containing protein n=1 Tax=A... [more]
UPI001E6760F84.180e-544.64uncharacterized protein LOC123762007 n=1 Tax=Proca... [more]
R7UVK8_CAPTE4.620e-541.07Uncharacterized protein (Fragment) n=1 Tax=Capitel... [more]
R7V632_CAPTE6.180e-543.64Uncharacterized protein (Fragment) n=1 Tax=Capitel... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig11752contigM-pyrifera_M_contig11752:8402..8680 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionAnkyrin repeat-containing domain
Ec32 orthologEc-11_005040.1
Exons1
Model size279
Cds size279
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815693.3658092-CDS-M-pyrifera_M_contig11752:8401..86801622815693.3658092-CDS-M-pyrifera_M_contig11752:8401..8680Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig11752 8402..8680 +
1692277524.7498422-CDS-M-pyrifera_M_contig11752:8401..86801692277524.7498422-CDS-M-pyrifera_M_contig11752:8401..8680Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig11752 8402..8680 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig11752.3630.1prot_M-pyrifera_M_contig11752.3630.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig11752 8402..8680 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig11752.3630.1

>prot_M-pyrifera_M_contig11752.3630.1 ID=prot_M-pyrifera_M_contig11752.3630.1|Name=mRNA_M-pyrifera_M_contig11752.3630.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=93bp
YRTYTSKYTTQAAIEGRAEEMSLLISHGLEIDAVNEDGNTALHLASRHGM
VEVSQRLAEAFPDEEIQNRRGFTALDEAIQADRTQCTGCARDF
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mRNA from alignment at M-pyrifera_M_contig11752:8402..8680+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig11752.3630.1 ID=mRNA_M-pyrifera_M_contig11752.3630.1|Name=mRNA_M-pyrifera_M_contig11752.3630.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=279bp|location=Sequence derived from alignment at M-pyrifera_M_contig11752:8402..8680+ (Macrocystis pyrifera P11B4 male)
TACCGCACATATACATCTAAATATACAACGCAGGCAGCTATCGAGGGGCG
AGCTGAGGAGATGTCCTTGCTCATCAGTCACGGGCTGGAAATCGACGCCG
TCAACGAGGATGGCAACACGGCCCTCCACCTTGCGTCGAGACACGGGATG
GTGGAGGTGTCTCAGCGCTTGGCCGAGGCCTTCCCCGACGAGGAGATCCA
GAACCGACGCGGCTTCACCGCGCTCGATGAAGCCATCCAAGCCGACCGCA
CACAATGCACAGGCTGCGCTCGGGACTTC
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig11752:8402..8680+

>mRNA_M-pyrifera_M_contig11752.3630.1 ID=mRNA_M-pyrifera_M_contig11752.3630.1|Name=mRNA_M-pyrifera_M_contig11752.3630.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=558bp|location=Sequence derived from alignment at M-pyrifera_M_contig11752:8402..8680+ (Macrocystis pyrifera P11B4 male)
TACCGCACATATACATCTAAATATACAACGCAGGCAGCTATCGAGGGGCG
AGCTGAGGAGATGTCCTTGCTCATCAGTCACGGGCTGGAAATCGACGCCG
TCAACGAGGATGGCAACACGGCCCTCCACCTTGCGTCGAGACACGGGATG
GTGGAGGTGTCTCAGCGCTTGGCCGAGGCCTTCCCCGACGAGGAGATCCA
GAACCGACGCGGCTTCACCGCGCTCGATGAAGCCATCCAAGCCGACCGCA
CACAATGCACAGGCTGCGCTCGGGACTTCTACCGCACATATACATCTAAA
TATACAACGCAGGCAGCTATCGAGGGGCGAGCTGAGGAGATGTCCTTGCT
CATCAGTCACGGGCTGGAAATCGACGCCGTCAACGAGGATGGCAACACGG
CCCTCCACCTTGCGTCGAGACACGGGATGGTGGAGGTGTCTCAGCGCTTG
GCCGAGGCCTTCCCCGACGAGGAGATCCAGAACCGACGCGGCTTCACCGC
GCTCGATGAAGCCATCCAAGCCGACCGCACACAATGCACAGGCTGCGCTC
GGGACTTC
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