mRNA_M-pyrifera_M_contig117516.3628.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig117516.3628.1
Unique NamemRNA_M-pyrifera_M_contig117516.3628.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig117516.3628.1 vs. uniprot
Match: A0A6I6A6S7_9PLAN (DUF1559 domain-containing protein n=12 Tax=cellular organisms TaxID=131567 RepID=A0A6I6A6S7_9PLAN)

HSP 1 Score: 177 bits (448), Expect = 2.840e-53
Identity = 87/89 (97.75%), Postives = 88/89 (98.88%), Query Frame = 1 
Query:    1 LGGGGSDRKHCFSNGADSNPPTEMTEYLIAAESNDPINSYGEEAAGSYHTGGAHFVLCDGSVRFLSENIDMTLYRALSTRAKRETIGEF 267
            LGGGGSDRKHCFSNGADSNPPTEMTEYLIAAE+NDPINSYGEEAAGSYHTGGAHFVLCDGSVRFLSENI MTLYRALSTRAKRETIGEF
Sbjct:  226 LGGGGSDRKHCFSNGADSNPPTEMTEYLIAAENNDPINSYGEEAAGSYHTGGAHFVLCDGSVRFLSENIAMTLYRALSTRAKRETIGEF 314
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BLAST of mRNA_M-pyrifera_M_contig117516.3628.1 vs. uniprot
Match: A0A517V9B6_9PLAN (Type II secretion system protein G n=16 Tax=Planctomycetaceae TaxID=126 RepID=A0A517V9B6_9PLAN)

HSP 1 Score: 166 bits (421), Expect = 3.570e-49
Identity = 81/87 (93.10%), Postives = 84/87 (96.55%), Query Frame = 1 
Query:    1 LGGGGSDRKHCFSNGADSNPPTEMTEYLIAAESNDPINSYGEEAAGSYHTGGAHFVLCDGSVRFLSENIDMTLYRALSTRAKRETIG 261
            LGGGGSDRKHCFSNGADSNPPTEMTEYLIAAESNDPINSYGEEAAGSYHTGGAHFV  DG V+FLSEN+DMTLYRALSTRAKRET+G
Sbjct:  228 LGGGGSDRKHCFSNGADSNPPTEMTEYLIAAESNDPINSYGEEAAGSYHTGGAHFVFGDGRVKFLSENVDMTLYRALSTRAKRETLG 314
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BLAST of mRNA_M-pyrifera_M_contig117516.3628.1 vs. uniprot
Match: A0A2E2C9X2_9PLAN (Prepilin-type cleavage/methylation domain-containing protein n=1 Tax=Gimesia sp. TaxID=2024833 RepID=A0A2E2C9X2_9PLAN)

HSP 1 Score: 160 bits (405), Expect = 8.600e-47
Identity = 78/87 (89.66%), Postives = 81/87 (93.10%), Query Frame = 1 
Query:    1 LGGGGSDRKHCFSNGADSNPPTEMTEYLIAAESNDPINSYGEEAAGSYHTGGAHFVLCDGSVRFLSENIDMTLYRALSTRAKRETIG 261
            LGGGGSDRKHCFSNGADSNPPTEMTEYLIAAE NDPINSYGEEAAGSYHTGGAHFV  DG VRFLSEN+DM LYRA+STRAKRET+ 
Sbjct:  226 LGGGGSDRKHCFSNGADSNPPTEMTEYLIAAEGNDPINSYGEEAAGSYHTGGAHFVFGDGRVRFLSENMDMALYRAISTRAKRETLS 312
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BLAST of mRNA_M-pyrifera_M_contig117516.3628.1 vs. uniprot
Match: A0A517VUP4_9PLAN (Type II secretion system protein G n=2 Tax=Gimesia aquarii TaxID=2527964 RepID=A0A517VUP4_9PLAN)

HSP 1 Score: 160 bits (404), Expect = 1.250e-46
Identity = 79/89 (88.76%), Postives = 82/89 (92.13%), Query Frame = 1 
Query:    1 LGGGGSDRKHCFSNGADSNPPTEMTEYLIAAESNDPINSYGEEAAGSYHTGGAHFVLCDGSVRFLSENIDMTLYRALSTRAKRETIGEF 267
            LGG GSDRK+CFS GADSNPPTEMTEYLIAAE+NDPINSYGEEAAGSYH GGAHFVL DG VRFLSENIDM  YRALSTRAKRET+GEF
Sbjct:  228 LGGAGSDRKYCFSGGADSNPPTEMTEYLIAAENNDPINSYGEEAAGSYHVGGAHFVLGDGRVRFLSENIDMATYRALSTRAKRETLGEF 316
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BLAST of mRNA_M-pyrifera_M_contig117516.3628.1 vs. uniprot
Match: UPI001E40499B (DUF1559 domain-containing protein n=2 Tax=Gimesia panareensis TaxID=2527978 RepID=UPI001E40499B)

HSP 1 Score: 158 bits (399), Expect = 1.810e-46
Identity = 78/89 (87.64%), Postives = 82/89 (92.13%), Query Frame = 1 
Query:    1 LGGGGSDRKHCFSNGADSNPPTEMTEYLIAAESNDPINSYGEEAAGSYHTGGAHFVLCDGSVRFLSENIDMTLYRALSTRAKRETIGEF 267
            LGGGGSDRKHCFS GADSNPPTEM+EYLIAAESNDPIN+Y EEAAGSYH GGA FV  DG VRFLSENIDMTLYRA+STRAKRETIG+F
Sbjct:  176 LGGGGSDRKHCFSGGADSNPPTEMSEYLIAAESNDPINAYHEEAAGSYHVGGAQFVFGDGRVRFLSENIDMTLYRAISTRAKRETIGDF 264
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BLAST of mRNA_M-pyrifera_M_contig117516.3628.1 vs. uniprot
Match: A0A518IB33_9PLAN (Putative major pilin subunit n=2 Tax=Gimesia fumaroli TaxID=2527976 RepID=A0A518IB33_9PLAN)

HSP 1 Score: 157 bits (397), Expect = 1.440e-45
Identity = 76/89 (85.39%), Postives = 82/89 (92.13%), Query Frame = 1 
Query:    1 LGGGGSDRKHCFSNGADSNPPTEMTEYLIAAESNDPINSYGEEAAGSYHTGGAHFVLCDGSVRFLSENIDMTLYRALSTRAKRETIGEF 267
            LGGGGSDRKHCFS GADSNPPTEMTEYLIAAESNDPINSYGEEAAGSYH GGAHF++ DG V+FLSENIDM+ YRA+STRAKRET+  F
Sbjct:  228 LGGGGSDRKHCFSGGADSNPPTEMTEYLIAAESNDPINSYGEEAAGSYHVGGAHFLMGDGRVKFLSENIDMSTYRAVSTRAKRETLDNF 316
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BLAST of mRNA_M-pyrifera_M_contig117516.3628.1 vs. uniprot
Match: A6CFI7_9PLAN (Uncharacterized protein n=24 Tax=cellular organisms TaxID=131567 RepID=A6CFI7_9PLAN)

HSP 1 Score: 155 bits (392), Expect = 7.690e-45
Identity = 76/87 (87.36%), Postives = 80/87 (91.95%), Query Frame = 1 
Query:    1 LGGGGSDRKHCFSNGADSNPPTEMTEYLIAAESNDPINSYGEEAAGSYHTGGAHFVLCDGSVRFLSENIDMTLYRALSTRAKRETIG 261
            LGGGGSDRKHCFS GADSNPPTEM+EYLIAAESNDPIN Y EEAAGSYHTGGA FV  DG VRFLSEN+DMTLYRA+STRAKRET+G
Sbjct:  226 LGGGGSDRKHCFSGGADSNPPTEMSEYLIAAESNDPINGYAEEAAGSYHTGGAQFVFGDGRVRFLSENMDMTLYRAISTRAKRETLG 312
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BLAST of mRNA_M-pyrifera_M_contig117516.3628.1 vs. uniprot
Match: A0A517QK58_9PLAN (Type II secretion system protein G n=2 Tax=Thalassoglobus polymorphus TaxID=2527994 RepID=A0A517QK58_9PLAN)

HSP 1 Score: 150 bits (378), Expect = 9.890e-43
Identity = 74/89 (83.15%), Postives = 79/89 (88.76%), Query Frame = 1 
Query:    1 LGGGGSDRKHCFSNGADSNPPTEMTEYLIAAESNDPINSYGEEAAGSYHTGGAHFVLCDGSVRFLSENIDMTLYRALSTRAKRETIGEF 267
            LGG GSDRKHCFS GADSNPPTEMTEYLIAAESNDPINSYGEEAAGS+H GGA F+L DGSVRFLSEN+DMT YR++STRA  E  GEF
Sbjct:  228 LGGAGSDRKHCFSGGADSNPPTEMTEYLIAAESNDPINSYGEEAAGSFHVGGAQFLLGDGSVRFLSENLDMTTYRSISTRANGELPGEF 316
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BLAST of mRNA_M-pyrifera_M_contig117516.3628.1 vs. uniprot
Match: D5SN09_PLAL2 (Uncharacterized protein n=4 Tax=Planctopirus TaxID=1649480 RepID=D5SN09_PLAL2)

HSP 1 Score: 147 bits (371), Expect = 1.030e-41
Identity = 72/89 (80.90%), Postives = 79/89 (88.76%), Query Frame = 1 
Query:    1 LGGGGSDRKHCFSNGADSNPPTEMTEYLIAAESNDPINSYGEEAAGSYHTGGAHFVLCDGSVRFLSENIDMTLYRALSTRAKRETIGEF 267
            LGGGGSDRKH FS GADSNPPTEM+EYLIAAE NDPINSY EEAAGSYHTGGAHF++ DGSVRFLSEN+ M  Y+A+STR K ET+GEF
Sbjct:  225 LGGGGSDRKHGFSGGADSNPPTEMSEYLIAAEGNDPINSYTEEAAGSYHTGGAHFLMGDGSVRFLSENMHMPTYQAISTRGKNETVGEF 313
[Close]
BLAST of mRNA_M-pyrifera_M_contig117516.3628.1 vs. uniprot
Match: UPI001EE8C007 (DUF1559 domain-containing protein n=1 Tax=Rubinisphaera sp. ICM_H10 TaxID=2909586 RepID=UPI001EE8C007)

HSP 1 Score: 147 bits (370), Expect = 1.880e-41
Identity = 74/89 (83.15%), Postives = 78/89 (87.64%), Query Frame = 1 
Query:    1 LGGGGSDRKHCFSNGADSNPPTEMTEYLIAAESNDPINSYGEEAAGSYHTGGAHFVLCDGSVRFLSENIDMTLYRALSTRAKRETIGEF 267
            LGGGGSDRKHCFSNGADSNPPTEMTEYLIAAESNDPIN+Y EEAAGSYH GGA FVL DGSVRFLSENI M+ Y+A+STR   E  GEF
Sbjct:  236 LGGGGSDRKHCFSNGADSNPPTEMTEYLIAAESNDPINAYTEEAAGSYHVGGAQFVLGDGSVRFLSENIAMSTYQAISTRDNGEVPGEF 324
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig117516.3628.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6I6A6S7_9PLAN2.840e-5397.75DUF1559 domain-containing protein n=12 Tax=cellula... [more]
A0A517V9B6_9PLAN3.570e-4993.10Type II secretion system protein G n=16 Tax=Planct... [more]
A0A2E2C9X2_9PLAN8.600e-4789.66Prepilin-type cleavage/methylation domain-containi... [more]
A0A517VUP4_9PLAN1.250e-4688.76Type II secretion system protein G n=2 Tax=Gimesia... [more]
UPI001E40499B1.810e-4687.64DUF1559 domain-containing protein n=2 Tax=Gimesia ... [more]
A0A518IB33_9PLAN1.440e-4585.39Putative major pilin subunit n=2 Tax=Gimesia fumar... [more]
A6CFI7_9PLAN7.690e-4587.36Uncharacterized protein n=24 Tax=cellular organism... [more]
A0A517QK58_9PLAN9.890e-4383.15Type II secretion system protein G n=2 Tax=Thalass... [more]
D5SN09_PLAL21.030e-4180.90Uncharacterized protein n=4 Tax=Planctopirus TaxID... [more]
UPI001EE8C0071.880e-4183.15DUF1559 domain-containing protein n=1 Tax=Rubinisp... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig117516contigM-pyrifera_M_contig117516:3..272 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeBacteria
Seed ortholog score171.4
Seed ortholog evalue1.9e-40
Seed eggNOG ortholog344747.PM8797T_00824
Hectar predicted targeting categoryother localisation
EggNOG free text desc.Pfam:N_methyl_2
EggNOG OGs2J1YP@203682,COG2165@1,COG2165@2
COG Functional cat.NU
Best tax levelPlanctomycetes
Best eggNOG OGNA|NA|NA
Exons1
Model size270
Cds size270
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815693.2941358-CDS-M-pyrifera_M_contig117516:2..2721622815693.2941358-CDS-M-pyrifera_M_contig117516:2..272Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig117516 3..272 +
1692277524.7187579-CDS-M-pyrifera_M_contig117516:2..2721692277524.7187579-CDS-M-pyrifera_M_contig117516:2..272Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig117516 3..272 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig117516.3628.1prot_M-pyrifera_M_contig117516.3628.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig117516 3..272 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig117516.3628.1

>prot_M-pyrifera_M_contig117516.3628.1 ID=prot_M-pyrifera_M_contig117516.3628.1|Name=mRNA_M-pyrifera_M_contig117516.3628.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=90bp
LGGGGSDRKHCFSNGADSNPPTEMTEYLIAAESNDPINSYGEEAAGSYHT
GGAHFVLCDGSVRFLSENIDMTLYRALSTRAKRETIGEF*
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mRNA from alignment at M-pyrifera_M_contig117516:3..272+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig117516.3628.1 ID=mRNA_M-pyrifera_M_contig117516.3628.1|Name=mRNA_M-pyrifera_M_contig117516.3628.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=270bp|location=Sequence derived from alignment at M-pyrifera_M_contig117516:3..272+ (Macrocystis pyrifera P11B4 male)
CTGGGTGGCGGCGGTAGTGACCGCAAGCACTGCTTCTCCAACGGAGCAGA
CAGCAATCCCCCCACCGAAATGACCGAGTACCTGATTGCCGCTGAAAGCA
ACGACCCGATCAACTCCTACGGGGAAGAAGCAGCCGGCAGCTATCACACC
GGCGGTGCTCACTTCGTTCTGTGTGACGGTAGCGTGCGATTCCTCTCTGA
GAACATCGACATGACGCTCTACCGGGCACTCAGCACCCGTGCGAAACGGG
AAACGATTGGCGAGTTCTAA
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig117516:3..272+

>mRNA_M-pyrifera_M_contig117516.3628.1 ID=mRNA_M-pyrifera_M_contig117516.3628.1|Name=mRNA_M-pyrifera_M_contig117516.3628.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=540bp|location=Sequence derived from alignment at M-pyrifera_M_contig117516:3..272+ (Macrocystis pyrifera P11B4 male)
CTGGGTGGCGGCGGTAGTGACCGCAAGCACTGCTTCTCCAACGGAGCAGA
CAGCAATCCCCCCACCGAAATGACCGAGTACCTGATTGCCGCTGAAAGCA
ACGACCCGATCAACTCCTACGGGGAAGAAGCAGCCGGCAGCTATCACACC
GGCGGTGCTCACTTCGTTCTGTGTGACGGTAGCGTGCGATTCCTCTCTGA
GAACATCGACATGACGCTCTACCGGGCACTCAGCACCCGTGCGAAACGGG
AAACGATTGGCGAGTTCTAACTGGGTGGCGGCGGTAGTGACCGCAAGCAC
TGCTTCTCCAACGGAGCAGACAGCAATCCCCCCACCGAAATGACCGAGTA
CCTGATTGCCGCTGAAAGCAACGACCCGATCAACTCCTACGGGGAAGAAG
CAGCCGGCAGCTATCACACCGGCGGTGCTCACTTCGTTCTGTGTGACGGT
AGCGTGCGATTCCTCTCTGAGAACATCGACATGACGCTCTACCGGGCACT
CAGCACCCGTGCGAAACGGGAAACGATTGGCGAGTTCTAA
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