mRNA_M-pyrifera_M_contig11751.3624.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig11751.3624.1
Unique NamemRNA_M-pyrifera_M_contig11751.3624.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig11751.3624.1 vs. uniprot
Match: D7FP39_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FP39_ECTSI)

HSP 1 Score: 192 bits (489), Expect = 1.500e-52
Identity = 123/258 (47.67%), Postives = 151/258 (58.53%), Query Frame = 1 
Query:    1 LSLPWSPDRFHLNVVAGMEAG--HGSXXXXXXXXXXXXXXXXXRRKSXXXXSSRSCSSG-SREPFFSLDRLLGVVSGEGWPGVKAAIFGTFSVDIRRMADEIPSLFSTENRTIPVLVLHGAKSLNRRPLEACPLSPSTFGXXXXXXXXXXXXXXXXETKGDRLQDDAPYGEDYVLVRNKLEGFFSAERRARLERAGKLDRLEDYEFVMPATVQLEKASKRG-GVHHPKFGLIFLNDGSLVFFVSTANLGTDTAVDATW 762
            LSLPW  DRF+LNV+  +     +G                  R  S       S   G +  PFFSL+RL+ VVSG+G PG+KAAIFGT S+ I R+A+EIPSLFS  N T+PVLVLHG KSL R    +  +  +T G   XXXXXX        T  D       +G DY+L R  L    S+E+R RL+ AG+ DRL+ +E  MPA VQ+EK    G GVHHPKFGL+FL D SLV +V T NLG DTA+DATW
Sbjct:   46 LSLPWLADRFYLNVIPAVRESERNGQGEDWKISQDTNVKSESNRSGSKHDGGGDSVGRGYANGPFFSLERLVDVVSGKGGPGIKAAIFGTMSLQIGRLAEEIPSLFSRSNLTVPVLVLHGEKSLRRLRDSSAEVINTTRGEAAXXXXXXKGGASDYRTNSD-------HGADYILFRESLGKNASSEQRERLKAAGREDRLDYWEMSMPAHVQVEKVHTGGLGVHHPKFGLLFLKDDSLVVYVGTGNLGVDTAIDATW 296
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig11751.3624.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FP39_ECTSI1.500e-5247.67Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig11751contigM-pyrifera_M_contig11751:356..4306 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score198.0
Seed ortholog evalue5.4e-48
Seed eggNOG ortholog2880.D7FP39
Hectar predicted targeting categoryother localisation
EggNOG OGs2E1MX@1,2S8Y8@2759
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons6
Model size765
Cds size765
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig11751.3624.1prot_M-pyrifera_M_contig11751.3624.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig11751 356..4306 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815693.075048-CDS-M-pyrifera_M_contig11751:355..4531622815693.075048-CDS-M-pyrifera_M_contig11751:355..453Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig11751 356..453 +
1692277524.601977-CDS-M-pyrifera_M_contig11751:355..4531692277524.601977-CDS-M-pyrifera_M_contig11751:355..453Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig11751 356..453 +
1622815693.0881498-CDS-M-pyrifera_M_contig11751:558..7381622815693.0881498-CDS-M-pyrifera_M_contig11751:558..738Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig11751 559..738 +
1692277524.6126592-CDS-M-pyrifera_M_contig11751:558..7381692277524.6126592-CDS-M-pyrifera_M_contig11751:558..738Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig11751 559..738 +
1622815693.1004846-CDS-M-pyrifera_M_contig11751:1966..20661622815693.1004846-CDS-M-pyrifera_M_contig11751:1966..2066Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig11751 1967..2066 +
1692277524.6207204-CDS-M-pyrifera_M_contig11751:1966..20661692277524.6207204-CDS-M-pyrifera_M_contig11751:1966..2066Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig11751 1967..2066 +
1622815693.1153002-CDS-M-pyrifera_M_contig11751:2282..23111622815693.1153002-CDS-M-pyrifera_M_contig11751:2282..2311Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig11751 2283..2311 +
1692277524.6315591-CDS-M-pyrifera_M_contig11751:2282..23111692277524.6315591-CDS-M-pyrifera_M_contig11751:2282..2311Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig11751 2283..2311 +
1622815693.1301854-CDS-M-pyrifera_M_contig11751:2626..28621622815693.1301854-CDS-M-pyrifera_M_contig11751:2626..2862Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig11751 2627..2862 +
1692277524.6423123-CDS-M-pyrifera_M_contig11751:2626..28621692277524.6423123-CDS-M-pyrifera_M_contig11751:2626..2862Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig11751 2627..2862 +
1622815693.1422377-CDS-M-pyrifera_M_contig11751:4184..43061622815693.1422377-CDS-M-pyrifera_M_contig11751:4184..4306Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig11751 4185..4306 +
1692277524.6521928-CDS-M-pyrifera_M_contig11751:4184..43061692277524.6521928-CDS-M-pyrifera_M_contig11751:4184..4306Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig11751 4185..4306 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig11751.3624.1

>prot_M-pyrifera_M_contig11751.3624.1 ID=prot_M-pyrifera_M_contig11751.3624.1|Name=mRNA_M-pyrifera_M_contig11751.3624.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=255bp
LSLPWSPDRFHLNVVAGMEAGHGSGQGFGPGQGSGDSSSSNRRKSNKSNS
SRSCSSGSREPFFSLDRLLGVVSGEGWPGVKAAIFGTFSVDIRRMADEIP
SLFSTENRTIPVLVLHGAKSLNRRPLEACPLSPSTFGGGGGGGGGGGGGG
RRRETKGDRLQDDAPYGEDYVLVRNKLEGFFSAERRARLERAGKLDRLED
YEFVMPATVQLEKASKRGGVHHPKFGLIFLNDGSLVFFVSTANLGTDTAV
DATW*
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mRNA from alignment at M-pyrifera_M_contig11751:356..4306+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig11751.3624.1 ID=mRNA_M-pyrifera_M_contig11751.3624.1|Name=mRNA_M-pyrifera_M_contig11751.3624.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=3951bp|location=Sequence derived from alignment at M-pyrifera_M_contig11751:356..4306+ (Macrocystis pyrifera P11B4 male)
CTGTCCCTACCGTGGTCACCGGATCGATTCCACTTGAACGTGGTTGCTGG
GATGGAGGCCGGGCATGGCTCAGGGCAAGGCTTTGGGCCAGGGCAAGGGT
TGGAGAAGAGAGGGAGAGGCGAGGGGGGCGCCGTACGATTCGACGAGCGA
AGGTACGGAAACGATGATGACGATGGCAACAGCAGCAGGAGCAGCAGCGG
CAGCAGCGGGGACAGTAGCAGCAGCAACAGGAGAAAGAGCAACAAGAGCA
ATAGCAGCAGAAGCTGTAGCTCTGGCAGCCGAGAGCCCTTTTTCTCGCTA
GATAGGCTTCTGGGAGTGGTGAGCGGCGAGGGGTGGCCGGGCGTGAAGGC
CGCCATTTTCGGGACGTTTTCGGTCGACATAAGGTACGGTACGGTATGAT
ACGGTATGGTATTGATGGAGTATGAAATGGTATGGAATGGTATGGTATGG
TACATACGGTACGGTATGGTGCGGTACGGTACGGTACGGCTCGGGGTCCT
CTTGAAGAGGGGGGCGCTCGGTGAATGGATACCAGTATGATGGACGCAGA
CAGACAGAAGGACGCTACCAGATAGGCGGAGAGACAAAGCTACAACGAGA
GAGAGGGAGAGAGAGTAGACGGCCCGAGCGTCAACTCAACGGATGGTTGC
TCTTCGGCCCGTATTGTCGACACCCGCCAATCCCGCAGCCTCGAGCTCGG
CGCACGATACCACAACGCCGCCACTGCTTGCTCGCTTGTTCTCGCGGCCC
CTCACCCGTTCACTGCGCACGTCCTTCCTCCTTCTGCCTTCTCTTTGGTA
CGCAAAATATATTACTGATGCTACGTACGGCAGTCGCTTTTAGGTCCCTA
CTTTTTTTTAGCCGCTCAGAGCCACCATATACCTTGTTTAATTGAAGTCT
GGAAGCTTTTAAAGCTTTTTTTTGTTTTCTCGGTATGCACCGCCATACAT
GGGATTTGTTTTGTTACTCTTGCACCAAAAAAAAAACATTTTTCACATCC
AATTTGTTTTTGAGTGAGGTACAGAGCCACTTACTTTACTTGCCCGAGAT
GCGTACACGTGGTAGACACATGCTAAGGCACAGAGTTGCGCCTTTTTTTT
TCTGTGAGGTGTCCTCACATACGGAGCCCTACATCCCAGTGACACGCAAA
AGCTGATTTTCGGATAATTTGAAGGTGCAACCCGATGAACAATCCCATGA
CCTATTAACAGGTGTACAAATACTAATATCGCAACGAAAACAAATATATA
AAAAAAAAAACGCTCCGACGATTTTGGGTCAAGGAGCCCAGTCATTCAGA
AAAACTTTAGCGAAAAAGGGCTACTGCACCCCTATCGTAGTGCACGTCGG
TACTGAAAACGGGGGTAGCTCTCCTGCCGCAGGAAAGAGTGTTGCCTCGA
ATTTATTCACTCTCCCACCGCGCTGTTTCGCGTATTTCCCCCGTTCTTCT
CCTTCCTCTGCCTTTTTTTTTTTTTTTTGTGCCTGTTTTTGTTTTTGTTT
TTTGTTTTTGTTTTTTCTCGGCGGCACCAACCGCCCGAAACGTCAACGCC
AATGCCGACACCGACTCCCTTGGCAAACGCCATCGTTGACGCCACACCGG
CCAACAAACAGGAGGATGGCCGACGAAATCCCGAGCCTGTTTTCGACCGA
AAATCGGACCATTCCGGTGCTCGTCTTGCACGGTGCCAAGTCCCTGAACC
GGCGGCCGCTAGTGGCGGCGGGGGCGGCGACGGCAGGGAACCACTCTCGA
AGAAAGGATGACCGTGCCGAGGCTGGACACCTCTCCGAGGCTCGTCCGAA
TAAGGCTCGCCCTGCCGAGGCCCACACTTTGTTCGAAGTCGTCGGCGAGG
GCCTCGAGGCAAGCGGACCAAAAGGAGCGCGCGTCCACGGAGCCTTCGGG
CATGTTGCTGGAGGCGAGGAGGGGGAGGAGGCGTGTCCGCTGTCTCCCTC
AACCTTGTCTCACGACCACGGCGGCGGCGGCGGCGGCGGCGGCGGTGGTG
GTGGTGGTGGTGGTGGCGGCGGCGGCGGCCACGGCGGCGGTGGAAGAGGG
GCGGCCCCTGATGCGTTCTACAAAAGAGACGACGCGTGCGAGGCGAGGAG
AGGGCGGTGGGGGTCGACATTTACAGGAGATGGGATATTTGCAGAGGATG
GTGTTGGTGATGGTGGTGACTACAAGATGAGCTCATCGGACATTGCCGGC
AATGACGCCAATGTGGACTTGGCCGGTGTCGGCAGTGGCGGTGCCATCGA
CAGTACGGGGGGCGGGGGCAGCGGGGGCGGTGGGGGCGGTGGGGGCGGTG
GTGGTGGTGGTGGCCGCAGAAGAGAAACGAAGGGCGACAGGCTACAGGAT
GATGCTCCTTACGGAGAGGACTATGTTTTGGTGCGGAACAAGCTGGAAGG
GTTTTTTTCGGCAGAGAGGCGGGCCCGATTGGAGCGAGCAGGGAAGTTGG
ACCGGCTGGAGGACTACGAGTTTGTGATGCCTGCTACAGTGCAACTGGAG
AAGGCAAGTTGCTCACATCACACAGGATGGAGTACAGGTGGCGAGACTAC
GTGGTGGTGATGGTGACGGTGGCGGTGGTGGTTGTTGTGGATGGAGGTTG
AGGTGCTTCTGGTGGCGGCGGTGGTGGTGGTTGCTATTGTGGTGGTACTG
GTAGCGCTCCTAGTTGTGCTGGTGATGGGTGGTTGTGGCGGCCATTCGTG
AGGGTTGATTGTTGCAGTGGTGGGGGTTGGGGTAGTGGTTTTTGTGCTTG
TAACGTTTCGGTCTTGGCTGTGGTGGTGTGGCTGTGTTTATGATGATTGC
GATAAATGCTGTGGTGGTTGTGTTATGGAGGTGAGATCGAAGCTAGCTGT
GAAGCACGCGCGAAGTCATGATGCTAGTTTCAAACTTCCGCTCAAAGGGA
CTCCCCTGCCCCCATTAATTTCTGACAAGGCAACGATATCGGTAGCAGTA
CTTAGTGGCAACCATTTTTGCCCCGAGTGGTGGCCAGAGAGACAACAACC
ATCGCAGTACTAAGGGCGGCGCCGGTCGGTCGGTCGGTCGGTCGGCCGCC
GTAGGGAAAATAGCAGCACGACCCAAACAATCGCGATGGAGGTTTCTTGA
CCTTGTATATGTACCGTAGTGGTGCGAGATGTGAGCGATACGATTGAAAG
GAATCGCTGTCACTATTACGGGACCACAGTAAATATGACCCACGGTACAC
ACAAAAACCTACCTGGTATACTTTTACCTATTTTTACTAACAACATTTGG
TCCTATTTACTATGGCCCCCCCGTAATAATACGGGGGATCATAGTAAATA
GGACCTACGGTACACACAAAAGCCTATATATTTACCTATTCTTACTCACA
ATATTCGGTCCTGTTTACTATGGTCCCCCGTAATATTAATCCTCGGGCGC
AACATCCCGCTTGGGGAAACACCTTGAAAGTGGTGTGCTCATGTCATGCA
TGGTATTAATAGTCGTATGACCATATGCAGACCCTCGCGTCCAACACGTC
GGGTTTTCACCGACCAGGCAGACAGTGCTTGCGCCGAACGCGAAGCGCCG
TGAGGTGTTGGGCGAGTCGCATGAAGGGTGAGCTGCTTCCTACTAAGGGC
CGCTTATAAGTCGGGTTTTTTTGTTCCATATGGATGATAAGATTTAAATG
AATTGATGTGTTTTCTGGTGTCGCCACTTCCAGAGACAGCAAAGGGTATA
CTATGTAAGGAGGGAGGACGTGGAGATGGGGGGGGGGGGGTCACGAAATA
TCGTTTCACACGCGATCAGAGGACGGTGTCCTCATGTGTTTCCCCCCCCC
GCCTTTTCTTTCATCCCAGGTTGTGGCAGGCAAGCGTGGAGGCGTGCATC
ACCCAAAATTTGGGCTCATTTTCCTGAACGACGGATCCCTGGTGTTCTTC
GTCAGCACCGCCAACCTGGGAACGGACACGGCGGTGGATGCCACGTGGTG
A
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig11751:356..4306+

>mRNA_M-pyrifera_M_contig11751.3624.1 ID=mRNA_M-pyrifera_M_contig11751.3624.1|Name=mRNA_M-pyrifera_M_contig11751.3624.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=1530bp|location=Sequence derived from alignment at M-pyrifera_M_contig11751:356..4306+ (Macrocystis pyrifera P11B4 male)
CTGTCCCTACCGTGGTCACCGGATCGATTCCACTTGAACGTGGTTGCTGG
GATGGAGGCCGGGCATGGCTCAGGGCAAGGCTTTGGGCCAGGGCAAGGCT
GTCCCTACCGTGGTCACCGGATCGATTCCACTTGAACGTGGTTGCTGGGA
TGGAGGCCGGGCATGGCTCAGGGCAAGGCTTTGGGCCAGGGCAAGGCAGC
GGGGACAGTAGCAGCAGCAACAGGAGAAAGAGCAACAAGAGCAATAGCAG
CAGAAGCTGTAGCTCTGGCAGCCGAGAGCCCTTTTTCTCGCTAGATAGGC
TTCTGGGAGTGGTGAGCGGCGAGGGGTGGCCGGGCGTGAAGGCCGCCATT
TTCGGGACGTTTTCGGTCGACATAAGCAGCGGGGACAGTAGCAGCAGCAA
CAGGAGAAAGAGCAACAAGAGCAATAGCAGCAGAAGCTGTAGCTCTGGCA
GCCGAGAGCCCTTTTTCTCGCTAGATAGGCTTCTGGGAGTGGTGAGCGGC
GAGGGGTGGCCGGGCGTGAAGGCCGCCATTTTCGGGACGTTTTCGGTCGA
CATAAGGAGGATGGCCGACGAAATCCCGAGCCTGTTTTCGACCGAAAATC
GGACCATTCCGGTGCTCGTCTTGCACGGTGCCAAGTCCCTGAACCGGCGG
CCGCTAGAGGATGGCCGACGAAATCCCGAGCCTGTTTTCGACCGAAAATC
GGACCATTCCGGTGCTCGTCTTGCACGGTGCCAAGTCCCTGAACCGGCGG
CCGCTAGAGGCGTGTCCGCTGTCTCCCTCAACCTTGAGGCGTGTCCGCTG
TCTCCCTCAACCTTCGGGGGCGGTGGGGGCGGTGGGGGCGGTGGTGGTGG
TGGTGGCCGCAGAAGAGAAACGAAGGGCGACAGGCTACAGGATGATGCTC
CTTACGGAGAGGACTATGTTTTGGTGCGGAACAAGCTGGAAGGGTTTTTT
TCGGCAGAGAGGCGGGCCCGATTGGAGCGAGCAGGGAAGTTGGACCGGCT
GGAGGACTACGAGTTTGTGATGCCTGCTACAGTGCAACTGGAGAAGGCAA
CGGGGGCGGTGGGGGCGGTGGGGGCGGTGGTGGTGGTGGTGGCCGCAGAA
GAGAAACGAAGGGCGACAGGCTACAGGATGATGCTCCTTACGGAGAGGAC
TATGTTTTGGTGCGGAACAAGCTGGAAGGGTTTTTTTCGGCAGAGAGGCG
GGCCCGATTGGAGCGAGCAGGGAAGTTGGACCGGCTGGAGGACTACGAGT
TTGTGATGCCTGCTACAGTGCAACTGGAGAAGGCAAGCAAGCGTGGAGGC
GTGCATCACCCAAAATTTGGGCTCATTTTCCTGAACGACGGATCCCTGGT
GTTCTTCGTCAGCACCGCCAACCTGGGAACGGACACGGCGGTGGATGCCA
CGTGGTGAGCAAGCGTGGAGGCGTGCATCACCCAAAATTTGGGCTCATTT
TCCTGAACGACGGATCCCTGGTGTTCTTCGTCAGCACCGCCAACCTGGGA
ACGGACACGGCGGTGGATGCCACGTGGTGA
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