mRNA_M-pyrifera_M_contig117503.3620.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig117503.3620.1
Unique NamemRNA_M-pyrifera_M_contig117503.3620.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig117503.3620.1 vs. uniprot
Match: A7SRW3_NEMVE (Predicted protein n=2 Tax=Nematostella vectensis TaxID=45351 RepID=A7SRW3_NEMVE)

HSP 1 Score: 73.2 bits (178), Expect = 1.660e-12
Identity = 56/151 (37.09%), Postives = 78/151 (51.66%), Query Frame = 1
Query:    1 STVLREHGWESFADHELGTHAIRSLNDSGQPWSGEDRRAWGLSYSSRRNRRALATEEGLASLNTAAATKLPILFFPALLYLASALKHPAANRPV-----GAVAQMLQRW---------LPD---HATALRFASRASPKTQSYLEGALRIAR 402
            +T LR HG +S ADHE+GTH +RS ND  QPW   +R+ +GL  S  R+   L  EEGLA++NT   +++ +LF PALLY  + +      + +       +  M QRW         LPD   H          S + Q Y EGA++I R
Sbjct:  172 NTFLRTHGIQSLADHEIGTHFMRSANDGLQPWF-SNRQKFGLRSS--RSLCGLVCEEGLAAINTLLQSQVKLLFMPALLYYTACMSEQMTFKELFDHLGTYIFDMDQRWKQVTRVKRILPDCNHHG--------GSGQDQCYFEGAIQILR 311          
BLAST of mRNA_M-pyrifera_M_contig117503.3620.1 vs. uniprot
Match: UPI0010696511 (uncharacterized protein KIAA0895-like n=1 Tax=Dendronephthya gigantea TaxID=151771 RepID=UPI0010696511)

HSP 1 Score: 65.1 bits (157), Expect = 1.130e-9
Identity = 36/80 (45.00%), Postives = 52/80 (65.00%), Query Frame = 1
Query:    1 STVLREHGWESFADHELGTHAIRSLNDSGQPWSGEDRRAWGLSYSSRRNRRALATEEGLASLNTAAATKLPILFFPALLY 240
            +  LR+ G +  ADHE+GTH +R+LND  QPW   +RR +GL   + ++ R   TEEGLA++NT    K  +L++PA LY
Sbjct:  160 NVYLRQQGIKGLADHEIGTHYLRTLNDGFQPWF-SNRRLFGLRSLNSKHLRT--TEEGLAAINTLLQLKCRLLWWPAFLY 236          
BLAST of mRNA_M-pyrifera_M_contig117503.3620.1 vs. uniprot
Match: A0A8C5B7I4_GADMO (Uncharacterized protein n=1 Tax=Gadus morhua TaxID=8049 RepID=A0A8C5B7I4_GADMO)

HSP 1 Score: 63.9 bits (154), Expect = 3.060e-9
Identity = 56/145 (38.62%), Postives = 67/145 (46.21%), Query Frame = 1
Query:    7 VLREHGWESFADHELGTHAIRSLNDSGQPWSGE-DRRAWGLSYSSRRNRRALATEEGLASLNTAAATKLPILFFPALLYLASALKHPAANRPVGAVAQMLQRWLPDHATALRFASRAS------------PKTQSYLEGALRIAR 402
              REH  E    HE+GTH +RSLN+S QPWSG   RR  GL       R    TEEGLASL++    + P L+  ALLY+       AA      +   L R+L D  T   +  RA              K Q YLEG L I R
Sbjct:  383 TAREHWLEGMLRHEIGTHYLRSLNNSQQPWSGSAGRRRHGL-------RPPNPTEEGLASLHSVLLRRDPTLWRAALLYVTV---QRAARASFAQLFSDLARFLRDPHTRWDYCVRAKRGQTDTAQPGCFSKDQVYLEGILNILR 517          
BLAST of mRNA_M-pyrifera_M_contig117503.3620.1 vs. uniprot
Match: A0A061I724_CRIGR (Exocyst complex component 3-like protein n=2 Tax=Cricetulus griseus TaxID=10029 RepID=A0A061I724_CRIGR)

HSP 1 Score: 63.9 bits (154), Expect = 3.300e-9
Identity = 53/146 (36.30%), Postives = 71/146 (48.63%), Query Frame = 1
Query:    4 TVLREHGWESFADHELGTHAIRSLNDSGQPW-SGEDRRAWGLSYSSRRNRRALATEEGLASLNTAAATKLPILFFPALLYLASALKHPAANRPVGAVAQMLQRWLPDHATALRFASRAS------------PKTQSYLEGALRIAR 402
            T  R++  E    HE+GTH +R +N+S QPW S E R  +GL       R A  TEEGLASL++    K P L+  ALLY      H AA+     + Q L +++ D A    +  RA              K Q YL+G +RI R
Sbjct: 1054 TGARQYWLEGMLRHEIGTHYLRGVNNSRQPWHSTEGRLQYGL-------RPANPTEEGLASLHSVLFRKQPFLWRAALLYYTI---HQAAHMSFRQLFQDLAQYVQDEAVRWEYCVRAKRGQTDTSRPGCFSKDQVYLDGIVRILR 1189          
BLAST of mRNA_M-pyrifera_M_contig117503.3620.1 vs. uniprot
Match: A0A7J7JTR9_BUGNE (Uncharacterized protein n=1 Tax=Bugula neritina TaxID=10212 RepID=A0A7J7JTR9_BUGNE)

HSP 1 Score: 63.5 bits (153), Expect = 4.180e-9
Identity = 40/77 (51.95%), Postives = 47/77 (61.04%), Query Frame = 1
Query:   10 LREHGWESFADHELGTHAIRSLNDSGQPWSGEDRRAWGLSYSSRRNRRALATEEGLASLNTAAATKLPILFFPALLY 240
            LRE G    A+HE+GTH +RSLND  QPW   DR+ +GL   S R      TEEGLA+LNT    K   L+ PALLY
Sbjct:  178 LREQGIICLANHEIGTHYLRSLNDGLQPWYA-DRKKFGLR--STRGYHFRKTEEGLAALNTVLQAKSRYLYGPALLY 251          
BLAST of mRNA_M-pyrifera_M_contig117503.3620.1 vs. uniprot
Match: A0A3B3ZZV2_9GOBI (KIAA0895 like n=2 Tax=Periophthalmus magnuspinnatus TaxID=409849 RepID=A0A3B3ZZV2_9GOBI)

HSP 1 Score: 63.2 bits (152), Expect = 5.430e-9
Identity = 51/143 (35.66%), Postives = 69/143 (48.25%), Query Frame = 1
Query:   13 REHGWESFADHELGTHAIRSLNDSGQPWSG-EDRRAWGLSYSSRRNRRALATEEGLASLNTAAATKLPILFFPALLYLASALKHPAANRPVGAVAQMLQRWLPDHATALRFASRAS------------PKTQSYLEGALRIAR 402
            R+H  E    HE+GTH +R +N+S QPWS  E R+A GL       + A  TEEGLASL++    K P L+  ALLY      H A++     +   +QR++        +  RA              K Q YL+G LRI R
Sbjct:  252 RQHWLEGMLRHEIGTHYLRGVNNSLQPWSSSEQRKALGL-------KGANPTEEGLASLHSVLLRKQPFLWRAALLYYTV---HHASHMSFSQLFHHIQRFVSSPEVRWEYCLRAKRGQTDTSKPGCFSKDQVYLDGILRILR 384          
BLAST of mRNA_M-pyrifera_M_contig117503.3620.1 vs. uniprot
Match: A0A2G8L8T5_STIJA (Uncharacterized protein n=1 Tax=Stichopus japonicus TaxID=307972 RepID=A0A2G8L8T5_STIJA)

HSP 1 Score: 62.8 bits (151), Expect = 6.680e-9
Identity = 41/81 (50.62%), Postives = 49/81 (60.49%), Query Frame = 1
Query:   10 LREHGWESFADHELGTHAIRSLNDSGQPWSGEDRRAWGL----SYSSRRNRRALATEEGLASLNTAAATKLPILFFPALLY 240
            LRE G    ADHE+GTH IRS ND  QPW   +R  +GL    SYS ++      TEEGLA+LNT    +   LF+PALLY
Sbjct:  178 LREKGILCIADHEIGTHFIRSYNDGLQPWF-SNRLKFGLQKLKSYSLQQ------TEEGLAALNTVLKARSKYLFYPALLY 251          
BLAST of mRNA_M-pyrifera_M_contig117503.3620.1 vs. uniprot
Match: H0WFJ1_OTOGA (Uncharacterized protein n=1 Tax=Otolemur garnettii TaxID=30611 RepID=H0WFJ1_OTOGA)

HSP 1 Score: 62.4 bits (150), Expect = 1.020e-8
Identity = 53/146 (36.30%), Postives = 69/146 (47.26%), Query Frame = 1
Query:    4 TVLREHGWESFADHELGTHAIRSLNDSGQPW-SGEDRRAWGLSYSSRRNRRALATEEGLASLNTAAATKLPILFFPALLYLASALKHPAANRPVGAVAQMLQRWLPDHATALRFASRAS------------PKTQSYLEGALRIAR 402
            T  R++  E    HE+GTH +R +N+S QPW S E R  +GL       R A  TEEGLASL++    K P L+  ALLY      H AA      + Q L R++ D      +  RA              K Q YL+G +RI R
Sbjct:  267 TGARQYWLEGMLRHEIGTHYLRGVNNSRQPWHSAEGRLRYGL-------RPANPTEEGLASLHSVLFRKQPFLWRAALLYYTI---HRAARMSFRQLFQDLARYVQDADVRWEYCVRAKRGQTDTSKPGCFSKDQVYLDGIVRILR 402          
BLAST of mRNA_M-pyrifera_M_contig117503.3620.1 vs. uniprot
Match: A0A556V934_BAGYA (Uncharacterized protein n=2 Tax=Siluroidei TaxID=1489793 RepID=A0A556V934_BAGYA)

HSP 1 Score: 61.6 bits (148), Expect = 1.240e-8
Identity = 49/143 (34.27%), Postives = 69/143 (48.25%), Query Frame = 1
Query:   13 REHGWESFADHELGTHAIRSLNDSGQPWS-GEDRRAWGLSYSSRRNRRALATEEGLASLNTAAATKLPILFFPALLYLASALKHPAANRPVGAVAQMLQRWLPDHATALRFASRAS------------PKTQSYLEGALRIAR 402
            R+H  E    HE+GTH +R +N+S QPW+    R+ +GL       + A  TEEGLAS+++    K P L+  ALLY      + AAN     +   + R++ D A    +  RA              K Q YL+G LRI R
Sbjct:   76 RQHWLEGMLRHEIGTHYLRGVNNSMQPWATASGRKQFGL-------KPANPTEEGLASIHSVLLRKQPFLWRAALLYYTV---YHAANMSFSQLFSYIARFVQDPAVRWEYCLRAKRGQTDTSKPGCFSKDQVYLDGILRILR 208          
BLAST of mRNA_M-pyrifera_M_contig117503.3620.1 vs. uniprot
Match: A0A091QMH5_9GRUI (Uncharacterized protein KIAA0895-like (Fragment) n=2 Tax=Mesitornis unicolor TaxID=54374 RepID=A0A091QMH5_9GRUI)

HSP 1 Score: 61.6 bits (148), Expect = 1.260e-8
Identity = 50/140 (35.71%), Postives = 69/140 (49.29%), Query Frame = 1
Query:   13 REHGWESFADHELGTHAIRSLNDSGQPW-SGEDRRAWGLSYSSRRNRRALATEEGLASLNTAAATKLPILFFPALLYLASALKHPAANRPVGAVAQMLQRWLPDHATALRFASRASP---------KTQSYLEGALRIAR 402
            R+H  E    HE+GTH IR +N++ QPW S E R+ + L       + A  TEEGLASL++    K P L+  ALLY        A+     A+ Q L++++ D      +  RA           K Q YL+G LRI R
Sbjct:   81 RQHWLEGMLRHEIGTHYIRGVNNTRQPWRSSEGRKQYSL-------KPANPTEEGLASLHSVLFRKQPFLWRAALLYYTI---ERASRLSFSALFQDLEQYVQDAGVRWEYCVRAKRGQTDTSQPGKDQVYLDGILRILR 210          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig117503.3620.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A7SRW3_NEMVE1.660e-1237.09Predicted protein n=2 Tax=Nematostella vectensis T... [more]
UPI00106965111.130e-945.00uncharacterized protein KIAA0895-like n=1 Tax=Dend... [more]
A0A8C5B7I4_GADMO3.060e-938.62Uncharacterized protein n=1 Tax=Gadus morhua TaxID... [more]
A0A061I724_CRIGR3.300e-936.30Exocyst complex component 3-like protein n=2 Tax=C... [more]
A0A7J7JTR9_BUGNE4.180e-951.95Uncharacterized protein n=1 Tax=Bugula neritina Ta... [more]
A0A3B3ZZV2_9GOBI5.430e-935.66KIAA0895 like n=2 Tax=Periophthalmus magnuspinnatu... [more]
A0A2G8L8T5_STIJA6.680e-950.62Uncharacterized protein n=1 Tax=Stichopus japonicu... [more]
H0WFJ1_OTOGA1.020e-836.30Uncharacterized protein n=1 Tax=Otolemur garnettii... [more]
A0A556V934_BAGYA1.240e-834.27Uncharacterized protein n=2 Tax=Siluroidei TaxID=1... [more]
A0A091QMH5_9GRUI1.260e-835.71Uncharacterized protein KIAA0895-like (Fragment) n... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig117503contigM-pyrifera_M_contig117503:58..459 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeMetazoa
Seed ortholog score74.3
Seed ortholog evalue4.8e-11
Seed eggNOG ortholog45351.EDO33535
Hectar predicted targeting categoryother localisation
EggNOG free text desc.protein KIAA0895 homolog
EggNOG OGs28I6C@1,2QQGI@2759,38MI9@33154,3BEES@33208
COG Functional cat.S
Best tax levelMetazoa
Best eggNOG OGNA|NA|NA
Exons1
Model size402
Cds size402
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815692.9272332-CDS-M-pyrifera_M_contig117503:57..4591622815692.9272332-CDS-M-pyrifera_M_contig117503:57..459Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig117503 58..459 -
1692277524.5542135-CDS-M-pyrifera_M_contig117503:57..4591692277524.5542135-CDS-M-pyrifera_M_contig117503:57..459Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig117503 58..459 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig117503.3620.1prot_M-pyrifera_M_contig117503.3620.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig117503 58..459 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig117503.3620.1

>prot_M-pyrifera_M_contig117503.3620.1 ID=prot_M-pyrifera_M_contig117503.3620.1|Name=mRNA_M-pyrifera_M_contig117503.3620.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=134bp
STVLREHGWESFADHELGTHAIRSLNDSGQPWSGEDRRAWGLSYSSRRNR
RALATEEGLASLNTAAATKLPILFFPALLYLASALKHPAANRPVGAVAQM
LQRWLPDHATALRFASRASPKTQSYLEGALRIAR
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mRNA from alignment at M-pyrifera_M_contig117503:58..459-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig117503.3620.1 ID=mRNA_M-pyrifera_M_contig117503.3620.1|Name=mRNA_M-pyrifera_M_contig117503.3620.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=402bp|location=Sequence derived from alignment at M-pyrifera_M_contig117503:58..459- (Macrocystis pyrifera P11B4 male)
TCTACTGTGTTGCGTGAGCACGGGTGGGAGTCGTTTGCGGACCATGAACT TGGAACGCATGCGATTCGGTCTTTGAACGATAGTGGGCAACCATGGAGTG GAGAAGATCGTCGTGCTTGGGGATTGAGTTATAGTTCACGGCGAAACCGT CGCGCGTTAGCCACAGAAGAAGGCTTGGCGAGCTTGAATACAGCCGCTGC CACAAAACTCCCCATCCTCTTCTTTCCTGCGCTTCTCTACCTTGCATCTG CCCTCAAGCACCCTGCAGCAAATAGACCTGTAGGGGCAGTGGCTCAAATG CTTCAACGGTGGCTTCCAGATCATGCGACAGCATTGCGATTTGCATCACG TGCTTCTCCCAAAACCCAGTCCTACTTAGAAGGAGCATTACGTATCGCCA GG
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig117503:58..459-

>mRNA_M-pyrifera_M_contig117503.3620.1 ID=mRNA_M-pyrifera_M_contig117503.3620.1|Name=mRNA_M-pyrifera_M_contig117503.3620.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=804bp|location=Sequence derived from alignment at M-pyrifera_M_contig117503:58..459- (Macrocystis pyrifera P11B4 male)
TCTACTGTGTTGCGTGAGCACGGGTGGGAGTCGTTTGCGGACCATGAACT
TGGAACGCATGCGATTCGGTCTTTGAACGATAGTGGGCAACCATGGAGTG
GAGAAGATCGTCGTGCTTGGGGATTGAGTTATAGTTCACGGCGAAACCGT
CGCGCGTTAGCCACAGAAGAAGGCTTGGCGAGCTTGAATACAGCCGCTGC
CACAAAACTCCCCATCCTCTTCTTTCCTGCGCTTCTCTACCTTGCATCTG
CCCTCAAGCACCCTGCAGCAAATAGACCTGTAGGGGCAGTGGCTCAAATG
CTTCAACGGTGGCTTCCAGATCATGCGACAGCATTGCGATTTGCATCACG
TGCTTCTCCCAAAACCCAGTCCTACTTAGAAGGAGCATTACGTATCGCCA
GGTCTACTGTGTTGCGTGAGCACGGGTGGGAGTCGTTTGCGGACCATGAA
CTTGGAACGCATGCGATTCGGTCTTTGAACGATAGTGGGCAACCATGGAG
TGGAGAAGATCGTCGTGCTTGGGGATTGAGTTATAGTTCACGGCGAAACC
GTCGCGCGTTAGCCACAGAAGAAGGCTTGGCGAGCTTGAATACAGCCGCT
GCCACAAAACTCCCCATCCTCTTCTTTCCTGCGCTTCTCTACCTTGCATC
TGCCCTCAAGCACCCTGCAGCAAATAGACCTGTAGGGGCAGTGGCTCAAA
TGCTTCAACGGTGGCTTCCAGATCATGCGACAGCATTGCGATTTGCATCA
CGTGCTTCTCCCAAAACCCAGTCCTACTTAGAAGGAGCATTACGTATCGC
CAGG
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