mRNA_M-pyrifera_M_contig117502.3619.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig117502.3619.1
Unique NamemRNA_M-pyrifera_M_contig117502.3619.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig117502.3619.1 vs. uniprot
Match: A0A517MGX0_9BACT (Uncharacterized protein n=1 Tax=Roseimaritima multifibrata TaxID=1930274 RepID=A0A517MGX0_9BACT)

HSP 1 Score: 60.1 bits (144), Expect = 6.230e-9
Identity = 80/125 (64.00%), Postives = 80/125 (64.00%), Query Frame = -1 
Query:    1 MAVKTKSVAESHADHRHWHSDVTCXXXXXQNWKAEHVIAIEELQAALKRITEHGESXXXXXXXXXXXXXXXXXXXXXXXXSLKGGTESAVDETLDKQHLKQAELHQRXXXXXXXIKKHHHTAMAQ 375
            MAVKTKSVAESHADHRHWH     XXXXX                           XXXXXXXXXXXXXXXXXXXXXXXX        AVDETLDKQHLKQAE    XXXXXXXIKKHHHT MAQ
Sbjct:    1 MAVKTKSVAESHADHRHWHXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAVDETLDKQHLKQAEXXXXXXXXXXXIKKHHHTVMAQ 125
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig117502.3619.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A517MGX0_9BACT6.230e-964.00Uncharacterized protein n=1 Tax=Roseimaritima mult... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig117502contigM-pyrifera_M_contig117502:41..424 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal peptide
Exons1
Model size384
Cds size363
Stop1
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815692.873929-UTR-M-pyrifera_M_contig117502:40..611622815692.873929-UTR-M-pyrifera_M_contig117502:40..61Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig117502 41..61 +
1692277524.5380166-UTR-M-pyrifera_M_contig117502:40..611692277524.5380166-UTR-M-pyrifera_M_contig117502:40..61Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig117502 41..61 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815692.8878117-CDS-M-pyrifera_M_contig117502:61..4241622815692.8878117-CDS-M-pyrifera_M_contig117502:61..424Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig117502 62..424 +
1692277524.5461318-CDS-M-pyrifera_M_contig117502:61..4241692277524.5461318-CDS-M-pyrifera_M_contig117502:61..424Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig117502 62..424 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig117502.3619.1prot_M-pyrifera_M_contig117502.3619.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig117502 62..424 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig117502.3619.1

>prot_M-pyrifera_M_contig117502.3619.1 ID=prot_M-pyrifera_M_contig117502.3619.1|Name=mRNA_M-pyrifera_M_contig117502.3619.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=121bp
MLLDAFMSLLLTLMQLSLFQVLFVQRFVNGALGATFQAFSQTFLVLRQSC
FKFRNGFSMSFQGFSMLGDPLERRLQFLNRDHMLGFPVLNIVLPASHVAM
PVTMISVGFSYGFCLHGHLL*
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mRNA from alignment at M-pyrifera_M_contig117502:41..424+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig117502.3619.1 ID=mRNA_M-pyrifera_M_contig117502.3619.1|Name=mRNA_M-pyrifera_M_contig117502.3619.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=384bp|location=Sequence derived from alignment at M-pyrifera_M_contig117502:41..424+ (Macrocystis pyrifera P11B4 male)
TTGTGCCATCGCCGTGTGGTGATGCTTCTTGATGCGTTCATGAGCCTCTT
GTTGACGTTGATGCAACTCAGCCTGTTTCAGGTGCTGTTTGTCCAGCGTT
TCGTCAACGGCGCTCTCGGTGCCACCTTTCAGGCTTTCAGCCAAACTTTT
CTCGTGTTGCGACAGTCCTGCTTCAAGTTCCGCAACGGATTTAGCATGAG
CTTCCAAGGATTCTCCATGCTCGGTGATCCGCTTGAGCGCCGCCTGCAGT
TCCTCAATCGCGATCACATGCTCGGCTTTCCAGTTCTGAATATCGTCTTG
CCAGCAAGTCACGTCGCTATGCCAGTGACGATGATCAGCGTGGGATTCAG
CTACGGATTTTGTCTTCACGGCCATCTTCTTTAA
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig117502:41..424+

>mRNA_M-pyrifera_M_contig117502.3619.1 ID=mRNA_M-pyrifera_M_contig117502.3619.1|Name=mRNA_M-pyrifera_M_contig117502.3619.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=726bp|location=Sequence derived from alignment at M-pyrifera_M_contig117502:41..424+ (Macrocystis pyrifera P11B4 male)
ATGCTTCTTGATGCGTTCATGAGCCTCTTGTTGACGTTGATGCAACTCAG
CCTGTTTCAGGTGCTGTTTGTCCAGCGTTTCGTCAACGGCGCTCTCGGTG
CCACCTTTCAGGCTTTCAGCCAAACTTTTCTCGTGTTGCGACAGTCCTGC
TTCAAGTTCCGCAACGGATTTAGCATGAGCTTCCAAGGATTCTCCATGCT
CGGTGATCCGCTTGAGCGCCGCCTGCAGTTCCTCAATCGCGATCACATGC
TCGGCTTTCCAGTTCTGAATATCGTCTTGCCAGCAAGTCACGTCGCTATG
CCAGTGACGATGATCAGCGTGGGATTCAGCTACGGATTTTGTCTTCACGG
CCATCTTCTTTAAATGCTTCTTGATGCGTTCATGAGCCTCTTGTTGACGT
TGATGCAACTCAGCCTGTTTCAGGTGCTGTTTGTCCAGCGTTTCGTCAAC
GGCGCTCTCGGTGCCACCTTTCAGGCTTTCAGCCAAACTTTTCTCGTGTT
GCGACAGTCCTGCTTCAAGTTCCGCAACGGATTTAGCATGAGCTTCCAAG
GATTCTCCATGCTCGGTGATCCGCTTGAGCGCCGCCTGCAGTTCCTCAAT
CGCGATCACATGCTCGGCTTTCCAGTTCTGAATATCGTCTTGCCAGCAAG
TCACGTCGCTATGCCAGTGACGATGATCAGCGTGGGATTCAGCTACGGAT
TTTGTCTTCACGGCCATCTTCTTTAA
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