mRNA_M-pyrifera_M_contig117477.3613.1 (mRNA) Macrocystis pyrifera P11B4 male
|
Overview
Homology
BLAST of mRNA_M-pyrifera_M_contig117477.3613.1 vs. uniprot
Match: A0A1W2GBZ2_9BACT (MutS domain V n=2 Tax=Reichenbachiella faecimaris TaxID=692418 RepID=A0A1W2GBZ2_9BACT) HSP 1 Score: 262 bits (670), Expect = 9.170e-82 Identity = 125/184 (67.93%), Postives = 155/184 (84.24%), Query Frame = 1
Query: 1 NVREIQNMFVAFIAFVPMFGWIVRKHNQAKFTLSQHQYLIAINQNEVKRSLGTFSDLDDGLEYSDAHHEYAPDLDLFGSNSLFQLLTRSKLSGTREIIKNWLLQKSSKSDIEERQEAIQELHNETEWRQNLTAYGYHGDQQDKKYSNVVLSLIQWIEDNLGLIDKPFWIVMRYMMPILSFSILI 552
NVRE+QNM + F+A VP+FG IVRKHN+AKF+L+QHQ+LI IN+NE+KR +G FS LD G+E+ DAHH YAPDLDLFGSNSLFQLL RS+LSGT I+KNWLL KSSK++IEERQ AI+EL +WRQNLTAYGYHGDQQ +KY NVV+SLI W++ NLG +DKP W ++R++MPILS I++
Sbjct: 50 NVREVQNMLLCFVALVPIFGLIVRKHNKAKFSLAQHQHLITINENELKRVVGDFSGLDSGVEHLDAHHNYAPDLDLFGSNSLFQLLVRSRLSGTTAILKNWLLNKSSKTEIEERQSAIKELSQSVDWRQNLTAYGYHGDQQTQKYENVVVSLIHWLDKNLGSMDKPIWKILRFLMPILSGGIIL 233
BLAST of mRNA_M-pyrifera_M_contig117477.3613.1 vs. uniprot
Match: UPI000D6E8DDF (hypothetical protein n=1 Tax=Reichenbachiella versicolor TaxID=1821036 RepID=UPI000D6E8DDF) HSP 1 Score: 147 bits (371), Expect = 3.700e-38 Identity = 76/172 (44.19%), Postives = 110/172 (63.95%), Query Frame = 1
Query: 37 IAFVPMFGWIVRKHNQAKFTLSQHQYLIAINQNEVKRSLGTFSDLDDGLEYSDAHHEYAPDLDLFGSNSLFQLLTRSKLSGTREIIKNWLLQKSSKSDIEERQEAIQELHNETEWRQNLTAYGYHGDQQDKKYSNVVLSLIQWIEDNLGLIDKPFWIVMRYMMPILSFSILI 552
+ F P+FGW+VR HN+A+F Q ++LI IN++E+KR G + DG +D+ H YA D+D+FG NSLFQLL RS+L G+ + +WLL S ++ RQ A++EL ++RQ LTAY YH D K + LI W+ +NL IDKP + V ++ +PILS S++I
Sbjct: 63 VVFAPLFGWLVRLHNKARFEREQCKHLIEINEDEIKRISGDLKSIYDGGYEADSSHPYAVDMDVFGRNSLFQLLNRSRLKGSMNKMASWLLNHESSKEVLSRQSAVKELSESIDFRQELTAYSYHQKDDDSKE---LTDLIYWLRNNLNGIDKPIFKVAKFFLPILSVSMII 231
BLAST of mRNA_M-pyrifera_M_contig117477.3613.1 vs. uniprot
Match: A0A1M6NEK3_9BACT (MutS domain V n=3 Tax=Reichenbachiella TaxID=156993 RepID=A0A1M6NEK3_9BACT) HSP 1 Score: 120 bits (302), Expect = 1.580e-28 Identity = 65/172 (37.79%), Postives = 101/172 (58.72%), Query Frame = 1
Query: 37 IAFVPMFGWIVRKHNQAKFTLSQHQYLIAINQNEVKRSLGTFSDLDDGLEYSDAHHEYAPDLDLFGSNSLFQLLTRSKLSGTREIIKNWLLQKSSKSDIEERQEAIQELHNETEWRQNLTAYGYHGDQQDKKYSNVVLSLIQWIEDNLGLIDKPFWIVMRYMMPILSFSILI 552
I +VP+FG +V H++ K + Q +L+ INQNE+ R L +G EY D HH YAPDLD+FGS+SL+QL++R++ G++ I+ W+ + I +RQ AI+EL T+W Q TA+ H K + V S +Q I + +++ W + +Y +P LS + LI
Sbjct: 63 ITYVPIFGILVNVHSRIKAEIQQLSFLVEINQNEILRLHRNIKSLHNGAEYLDTHHPYAPDLDIFGSHSLYQLISRNRFLGSQRILAQWMAAPADIDMITQRQAAIKELREATDWTQTHTAHS-HAQINQKNKARPVSSYLQDIATDTQVLNGSIWKIAQYALPTLSIAFLI 233
BLAST of mRNA_M-pyrifera_M_contig117477.3613.1 vs. uniprot
Match: UPI00197A9D18 (DNA mismatch repair protein MutS n=1 Tax=Fulvivirga lutea TaxID=2810512 RepID=UPI00197A9D18) HSP 1 Score: 114 bits (285), Expect = 3.350e-26 Identity = 65/159 (40.88%), Postives = 90/159 (56.60%), Query Frame = 1
Query: 1 NVREIQNMFVAFIAFVPMFGWIVRKHNQAKFTLSQHQYLIAINQNEVKRSLGTFSDLDDGLEYSDAHHEYAPDLDLFGSNSLFQLLTRSKLSGTREIIKNWLLQKSSKSDIEERQEAIQELHNETEWRQNLTAYGYHGDQQDKKYSNVVLSLIQWIEDN 477
N R M + + F FG+IVR H + KF + L +INQ+E+ G S G EY + H YA DLD+FGSNSLFQLL R+ G ++++ +WLL KS+K + ERQEAI+EL + +WRQN A G H + Q L+ WI+ +
Sbjct: 49 NYRMAVEMGITALVFPFAFGFIVRAHQKIKFKREHAKILQSINQSELNILNGNLSSQATGQEYLNKKHSYANDLDIFGSNSLFQLLNRTSTKGGKDLLADWLLNKSNKDTVLERQEAIEELSAKIDWRQNFQANGLHYEMQQDNSDE----LLSWIKSS 203
BLAST of mRNA_M-pyrifera_M_contig117477.3613.1 vs. uniprot
Match: UPI0012BC8381 (DNA mismatch repair protein MutS n=1 Tax=Xanthovirga aplysinae TaxID=2529853 RepID=UPI0012BC8381) HSP 1 Score: 111 bits (278), Expect = 3.050e-25 Identity = 59/159 (37.11%), Postives = 95/159 (59.75%), Query Frame = 1
Query: 55 FGWIVRKHNQAKFTLSQHQYLIAINQNEVKRSLGTFSDLDDGLEYSDAHHEYAPDLDLFGSNSLFQLLTRSKLSGTREIIKNWLLQKSSKSDIEERQEAIQELHNETEWRQNLTAYGYHGDQQDKKYSNVVLSLIQWIEDNLGLIDKPFWIVMRYMMPI 531
F ++VR HN+ + + L IN+ E+ R G L G Y +A H YA DLD+FG NSLFQLL R+ S +E++ WLL+ + +++E RQEA++EL + EWRQN A G H + Q+++ N L+ W+++ L PF+++ +++P+
Sbjct: 68 FAFLVRYHNRISYEKKHNGILKEINEEEIARLKGKLRGLPSGDTYLEADHPYALDLDIFGQNSLFQLLCRATTSAGKEMLAKWLLKGAQLNEVESRQEAVKELSQKLEWRQNFQASGRHYEVQEEE--NHTQILLNWLKEPNKLSRNPFYVIGAWLLPL 224
BLAST of mRNA_M-pyrifera_M_contig117477.3613.1 vs. uniprot
Match: UPI00036F7065 (hypothetical protein n=1 Tax=Flexithrix dorotheae TaxID=70993 RepID=UPI00036F7065) HSP 1 Score: 107 bits (267), Expect = 9.440e-24 Identity = 65/185 (35.14%), Postives = 103/185 (55.68%), Query Frame = 1
Query: 1 NVREIQNMFVAFIAFVPMFGWIVRKHNQAKFTLSQHQYLIAINQNEVKRSLGTFSDLD-DGLEYSDAHHEYAPDLDLFGSNSLFQLLTRSKLS-GTREIIKNWLLQKSSKSDIEERQEAIQELHNETEWRQNLTAYGYHGDQQDKKYSNVVLSLIQWIEDNLGLIDKPFWIVMRYMMPILSFSIL 549
N RE +F + F +++KHNQ +F Q L+ IN+ E+ R G FS ++ DG E+ + H Y+ DLD+FG NSLFQL+ R+ S GT E+ K WL KS +DI RQE+++EL ++ E RQ+ A G G + K+ LI W+ + + +V Y +P+++ +++
Sbjct: 50 NEREAFLVFTTLVVSGFSFALLIKKHNQIRFERDYFQNLVQINKEEIHRLEGNFSKIENDGAEFQNQQHNYSGDLDIFGHNSLFQLINRTSTSPGTEELAK-WLKSKSEINDIYARQESVKELADQPELRQDFQAKGVFGIRDGKELEK----LIAWVNEKPHFSNNQLLVVASYFLPVITVALI 229
BLAST of mRNA_M-pyrifera_M_contig117477.3613.1 vs. uniprot
Match: UPI001F3F615B (DNA mismatch repair protein MutS n=1 Tax=Fulvivirga sp. SS9-22 TaxID=2904245 RepID=UPI001F3F615B) HSP 1 Score: 106 bits (265), Expect = 1.750e-23 Identity = 59/184 (32.07%), Postives = 102/184 (55.43%), Query Frame = 1
Query: 1 NVREIQNMFVAFIAFVPMFGWIVRKHNQAKFTLSQHQYLIAINQNEVKRSLGTFSDLDDGLEYSDAHHEYAPDLDLFGSNSLFQLLTRSKLSGTREIIKNWLLQKSSKSDIEERQEAIQELHNETEWRQNLTAYGYHGDQQDKKYSNVVLSLIQWIEDNLGLIDKPFWIVMRYMMPILSFSILI 552
N RE + V + F +FG IVR+HN+ + ++ +NQ E R +DL+ G + + H Y DLD+FG NS++QL++R+ + ++ WL + + K DI RQEA+QE+ + +WRQ A G Q K+ N SL++WI + ++DK + V+ Y++P ++ +++
Sbjct: 48 NTREGIGIGVTLVTFPVIFGLIVRRHNKIAESRDLARFSALVNQQETDRLENRMNDLEQGGRFKNKKHPYLHDLDIFGHNSIYQLISRAVTPSGQTLVAKWLSESARKQDIILRQEAVQEMASMLDWRQGFQASGM----QHKEEENNFHSLLEWINEPNRVLDKVLYRVLSYLLPTITIVLIL 227
BLAST of mRNA_M-pyrifera_M_contig117477.3613.1 vs. uniprot
Match: UPI00192D1F0B (DNA mismatch repair protein MutS n=1 Tax=Fulvivirga marina TaxID=2494733 RepID=UPI00192D1F0B) HSP 1 Score: 104 bits (260), Expect = 8.300e-23 Identity = 57/184 (30.98%), Postives = 103/184 (55.98%), Query Frame = 1
Query: 1 NVREIQNMFVAFIAFVPMFGWIVRKHNQAKFTLSQHQYLIAINQNEVKRSLGTFSDLDDGLEYSDAHHEYAPDLDLFGSNSLFQLLTRSKLSGTREIIKNWLLQKSSKSDIEERQEAIQELHNETEWRQNLTAYGYHGDQQDKKYSNVVLSLIQWIEDNLGLIDKPFWIVMRYMMPILSFSILI 552
N+R+ + V I F +FG IV+KHN+ ++ INQ E R ++LD G ++ + H Y DLD+FG NS++QL++R+ + ++ WL + + K +I RQEA++E+ +WRQ A G Q++ K+ SL+QWI + ++D + + Y++P+++ +++I
Sbjct: 48 NIRDGLGIGVTVIVFPIIFGLIVKKHNKIAEHRDLARFSALINQQETDRLANRMTELDQGNQFKNKKHPYLHDLDIFGHNSIYQLISRAVTPSGQSLVAEWLSKPAHKQEIVLRQEAVKEMIPMLDWRQAFQASGMQHGQEENKFH----SLLQWINEPNRVLDMVLYKALAYILPVITITLII 227
BLAST of mRNA_M-pyrifera_M_contig117477.3613.1 vs. uniprot
Match: A0A2G5L4T5_9BACT (DNA_MISMATCH_REPAIR_2 domain-containing protein n=1 Tax=Reichenbachiella sp. 5M10 TaxID=1889772 RepID=A0A2G5L4T5_9BACT) HSP 1 Score: 102 bits (254), Expect = 5.400e-22 Identity = 59/184 (32.07%), Postives = 98/184 (53.26%), Query Frame = 1
Query: 7 REIQNMFVAFIAFVPMFGWIVRKHNQAKFTLSQHQYLIAINQNEVKRSLGTFSDLDDGLEYSDAHHEYAPDLDLFGSNSLFQLLTRSKLSGTREIIKNWLLQKSSKSDIEERQEAIQELHNETEWRQNLTAYG--YHGDQQDKKYSNVVLSLIQWIEDNLGLIDKPFWIVMRYMMPILSFSILI 552
RE FI +VP FG ++ +HN+ F L + L +N E+ R DG Y + H YAPDLD+FG +SLFQLL RS+ G+++ + WL ++ +I RQ AI+EL + +W Q TAY + +++++K + +Q +E + + W V + +P+ + S++I
Sbjct: 53 RETAFALFTFILYVPCFGLLINRHNRKNFELQLAKSLTQVNDEEILRIDRQLKTFPDGNSYLHSGHPYAPDLDIFGKHSLFQLLNRSRFVGSQDTLAAWLSSPATTEEINARQAAIRELSEDLDWNQKHTAYSLVHVANKEEEKLD--LTEFVQGLESDTQVPLPALWSVAQIALPLATLSLII 234
BLAST of mRNA_M-pyrifera_M_contig117477.3613.1 vs. uniprot
Match: L8JR44_9BACT (MutS-related protein, family 1 n=1 Tax=Fulvivirga imtechensis AK7 TaxID=1237149 RepID=L8JR44_9BACT) HSP 1 Score: 100 bits (250), Expect = 1.870e-21 Identity = 58/172 (33.72%), Postives = 91/172 (52.91%), Query Frame = 1
Query: 37 IAFVPMFGWIVRKHNQAKFTLSQHQYLIAINQNEVKRSLGTFSDLDDGLEYSDAHHEYAPDLDLFGSNSLFQLLTRSKLSGTREIIKNWLLQKSSKSDIEERQEAIQELHNETEWRQNLTAYGYHGDQQDKKYSNVVLSLIQWIEDNLGLIDKPFWIVMRYMMPILSFSILI 552
+AF +FG +VR HN+ IN E++R G F+ L +G E+ D H Y DLD+FG NSL+QL+ RS R + +WL Q ++ + RQEA+ EL + +WRQ A G K + V L+ WI + ++DK + V ++P++S ++L+
Sbjct: 62 VAFPVIFGLVVRHHNRITAKRDVALASALINDQEIQRLTGNFNGLSEGEEFRDKKHPYLSDLDVFGKNSLYQLVNRSVTPSGRATVAHWLQQPATTQETRARQEAVNELRPQVDWRQEFQASG-----MQKSDDHHVELLLSWINEPNRVLDKKIYQVAAVVLPVVSIALLL 228 The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig117477.3613.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_M-pyrifera_M_contig117477.3613.1 >prot_M-pyrifera_M_contig117477.3613.1 ID=prot_M-pyrifera_M_contig117477.3613.1|Name=mRNA_M-pyrifera_M_contig117477.3613.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=177bp MFVAFIAFVPMFGWIVRKHNQAKFTLSQHQYLIAINQNEVKRSLGTFSDLback to top mRNA from alignment at M-pyrifera_M_contig117477:3..554+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_M-pyrifera_M_contig117477.3613.1 ID=mRNA_M-pyrifera_M_contig117477.3613.1|Name=mRNA_M-pyrifera_M_contig117477.3613.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=552bp|location=Sequence derived from alignment at M-pyrifera_M_contig117477:3..554+ (Macrocystis pyrifera P11B4 male)back to top Coding sequence (CDS) from alignment at M-pyrifera_M_contig117477:3..554+ >mRNA_M-pyrifera_M_contig117477.3613.1 ID=mRNA_M-pyrifera_M_contig117477.3613.1|Name=mRNA_M-pyrifera_M_contig117477.3613.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=1062bp|location=Sequence derived from alignment at M-pyrifera_M_contig117477:3..554+ (Macrocystis pyrifera P11B4 male)back to top |